Miyakogusa Predicted Gene
- Lj0g3v0354159.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0354159.1 tr|G7IAW3|G7IAW3_MEDTR 60S ribosomal protein L7
OS=Medicago truncatula GN=MTR_1g108780 PE=4 SV=1,54.32,2e-17,no
description,DNA-binding pseudobarrel domain; B3,B3 DNA binding domain;
DNA-binding pseudobarrel d,CUFF.24381.1
(83 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g108780.1 | transcriptional factor B3 family protein | HC ... 94 4e-20
Medtr8g103940.1 | transcriptional factor B3 family protein | LC ... 82 1e-16
Medtr3g061300.1 | B3 DNA-binding domain protein | LC | chr3:2434... 63 5e-11
Medtr3g061320.1 | plant-specific B3-DNA-binding domain protein |... 63 7e-11
Medtr3g061310.1 | transcriptional factor B3 family protein | LC ... 62 2e-10
Medtr3g061350.1 | plant-specific B3-DNA-binding domain protein |... 60 3e-10
Medtr3g061370.1 | plant-specific B3-DNA-binding domain protein |... 60 6e-10
Medtr3g061340.1 | transcriptional factor B3 family protein | LC ... 60 7e-10
Medtr1g034240.1 | B3 domain transcription factor VRN1-like prote... 59 1e-09
Medtr4g068320.1 | B3 domain transcription factor VRN1-like prote... 59 1e-09
Medtr1g034210.1 | B3 domain transcription factor VRN1-like prote... 50 4e-07
Medtr1g035460.1 | plant-specific B3-DNA-binding domain protein |... 48 2e-06
Medtr1g035490.1 | B3 DNA-binding domain protein | LC | chr1:1288... 46 8e-06
>Medtr1g108780.1 | transcriptional factor B3 family protein | HC |
chr1:49164002-49166141 | 20130731
Length = 461
Score = 93.6 bits (231), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 56/80 (70%)
Query: 3 RVPNPFIREYFNDMQQTIMLQYEKKLWPVKLICYPKKGSGKLSKGWVEFAGKSKLVVGDA 62
RV N F +Y ++T MLQ+E+KLWPV+L+ YP + + KL +GW F ++KL GD
Sbjct: 380 RVRNSFSSKYLGPKKKTAMLQFEEKLWPVQLMYYPSEPATKLGEGWSLFVEENKLQAGDV 439
Query: 63 CVFELINKEDPVLDVHIFRG 82
CVF L NKED VLDVHIFRG
Sbjct: 440 CVFVLANKEDVVLDVHIFRG 459
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 4 VPNPFIREYFNDMQQTIMLQY--EKKLWPVKLICYPKKGSGKLSKGWVEFAGKSKLVVGD 61
VP F ++Y + Q I LQ +++ W VK K+S GW F + L +GD
Sbjct: 217 VPLNFEQKYLKEQQSEIALQVLDDERTWIVKYCL------RKMSNGWKTFVSDNNLKLGD 270
Query: 62 ACVFELINKEDPVLDVHIFR 81
C+FE+IN + V IFR
Sbjct: 271 VCLFEMINSKSYAFKVLIFR 290
>Medtr8g103940.1 | transcriptional factor B3 family protein | LC |
chr8:43749832-43752569 | 20130731
Length = 498
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 3 RVPNPFIREYFNDMQQTIMLQYEKKLWPVKLICYPKKGSGKLSKGWVEFAGKSKLVVGDA 62
R+ N F +Y ++ + LQ+ K LW V+L P + S KLS GW +F ++KL GD
Sbjct: 418 RIHNSFSEKYLC-HKKIVTLQFNKNLWHVRLASCPSEPSTKLSTGWSKFVEENKLEAGDV 476
Query: 63 CVFELINKEDPVLDVHIFRG 82
CVFEL+NKED V D HIFRG
Sbjct: 477 CVFELVNKEDLVFDAHIFRG 496
>Medtr3g061300.1 | B3 DNA-binding domain protein | LC |
chr3:24346545-24347031 | 20130731
Length = 127
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 2 QRVPNPFIREYFNDMQQTIMLQYEKKLWPVKLICY-PKKGSGKLSKGWVEFAGKSKLVVG 60
RV P + + ++ +MLQ K+ W +KL+ Y + +LS GW FA +S L G
Sbjct: 44 NRVCVPTLNGVIENKEKYVMLQIGKRSWNLKLLPYCEARNVRRLSAGWSLFARESGLQAG 103
Query: 61 DACVFELINKEDPVLDVHIFRG 82
D CVFELINK+D V ++HI +
Sbjct: 104 DVCVFELINKKDLVFNIHITKS 125
>Medtr3g061320.1 | plant-specific B3-DNA-binding domain protein | LC
| chr3:24354366-24356126 | 20130731
Length = 279
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 2 QRVPNPFIREYFNDMQQTIMLQYEKKLWPVKLICYPKKGSGK-LSKGWVEFAGKSKLVVG 60
R+ P + + ++ +MLQ K+ W VKL+C+ K G+ LS W FA +S L G
Sbjct: 200 NRLNVPNFKGVIENKEKDVMLQIGKRSWNVKLLCWYKHTQGRRLSARWSLFARESGLQQG 259
Query: 61 DACVFELINKEDPVLDVHIF 80
+ CVFELINKE V VH+F
Sbjct: 260 NVCVFELINKEGLVFKVHVF 279
>Medtr3g061310.1 | transcriptional factor B3 family protein | LC |
chr3:24351032-24352721 | 20130731
Length = 285
Score = 61.6 bits (148), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 3 RVPNPFIREYFNDMQQTIMLQYEKKLWPVKLIC-YPKKGSGKLSKGWVEFAGKSKLVVGD 61
RVPN ++ + ++ ++LQ ++ W VKL+ Y ++ +LS GW F +S L +
Sbjct: 207 RVPNIHLKGVIENKEKNLVLQIGERSWKVKLLASYERETGRRLSAGWSLFVNESGLQPEN 266
Query: 62 ACVFELINKEDPVLDVHIF 80
CVFELINKE+ V VH+F
Sbjct: 267 VCVFELINKENLVFKVHVF 285
>Medtr3g061350.1 | plant-specific B3-DNA-binding domain protein | LC
| chr3:24365409-24364010 | 20130731
Length = 284
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 7 PFIREYFNDMQQTIMLQYEKKLWPVKLI-CYPKKGSGKLSKGWVEFAGKSKLVVGDACVF 65
P ++ + +ML K+ W VKL+ CY K + +LS GW F +S L GD CVF
Sbjct: 210 PDLKGVIENKDTNVMLLIGKRSWNVKLLRCYEGKYNRRLSAGWHLFLTESGLKSGDVCVF 269
Query: 66 ELINKEDPVLDVHIF 80
ELINK+D V VH++
Sbjct: 270 ELINKKDLVFKVHVY 284
>Medtr3g061370.1 | plant-specific B3-DNA-binding domain protein | HC
| chr3:24369308-24370598 | 20130731
Length = 281
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 7 PFIREYFNDMQQTIMLQYEKKLWPVKLI-CYPKKGSGKLSKGWVEFAGKSKLVVGDACVF 65
P ++ + +ML K+ W VKL+ Y K +LS GW FA +S L GD CVF
Sbjct: 207 PDLKGVIENKDTNVMLLIGKRSWNVKLLRSYEGKNGRRLSAGWYLFARESGLKSGDVCVF 266
Query: 66 ELINKEDPVLDVHIF 80
ELINK+D V +H++
Sbjct: 267 ELINKKDLVFKIHVY 281
>Medtr3g061340.1 | transcriptional factor B3 family protein | LC |
chr3:24361666-24362971 | 20130731
Length = 274
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 7 PFIREYFNDMQQTIMLQYEKKLWPVKLICYPKKGSGK-LSKGWVEFAGKSKLVVGDACVF 65
P + + ++ ++LQ K+ W VKL+ Y + +G+ LS GW FA +S L GD CVF
Sbjct: 200 PNLEGVIENKEKYVVLQIGKRSWNVKLLRYYEAKNGRHLSAGWSLFASESGLQSGDVCVF 259
Query: 66 ELINKEDPVLDVHIF 80
EL NK+D V +H+
Sbjct: 260 ELTNKQDLVFKIHVL 274
>Medtr1g034240.1 | B3 domain transcription factor VRN1-like protein
| HC | chr1:12442470-12446398 | 20130731
Length = 433
Score = 58.5 bits (140), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 4 VPNPFIREYFNDMQQTIMLQY-EKKLWPVKLICYPKKGSGKLSKGWVEFAGKSKLVVGDA 62
+P+ F + N + I LQ + + WPV+ C K G KLS+GW EF ++ L GD
Sbjct: 316 LPSCFAEKNLNGVSGFIKLQISDGRQWPVR--CLYKGGRAKLSQGWYEFTLENNLGEGDI 373
Query: 63 CVFELINKEDPVLDVHIFR 81
CVFEL+ + VL V +FR
Sbjct: 374 CVFELLRTREVVLQVTLFR 392
>Medtr4g068320.1 | B3 domain transcription factor VRN1-like protein
| HC | chr4:25619387-25622490 | 20130731
Length = 429
Score = 58.5 bits (140), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 4 VPNPFIREYFNDMQQTIMLQY-EKKLWPVKLICYPKKGSGKLSKGWVEFAGKSKLVVGDA 62
+P+ F + N + I LQ + + WPV+ C + G KLS+GW EF+ ++ L GD
Sbjct: 312 LPSCFAEKNLNGVSGIIKLQISDGRQWPVR--CLYRGGRAKLSQGWFEFSLENNLGEGDV 369
Query: 63 CVFELINKEDPVLDVHIFR 81
CVFEL+ ++ VL V +FR
Sbjct: 370 CVFELVATKEVVLQVTVFR 388
>Medtr1g034210.1 | B3 domain transcription factor VRN1-like protein
| LC | chr1:12425305-12428923 | 20130731
Length = 370
Score = 50.4 bits (119), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 26 KKLWPVKLICYPKKGSGKLSKGWVEFAGKSKLVVGDACVFELINKEDPVLDVHIFR 81
+K W V+ C +G KLS+GW EF ++ L GD CVFEL+N VL V +FR
Sbjct: 305 EKQWRVR--CLDNEGRIKLSQGWYEFTQENGLGEGDICVFELLNTRYVVLQVTLFR 358
>Medtr1g035460.1 | plant-specific B3-DNA-binding domain protein | LC
| chr1:12873695-12875594 | 20130731
Length = 396
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 4 VPNPFIREYFNDMQQTIMLQY-EKKLWPVKLICYPKKGSGKLSKGWVEFAGKSKLVVGDA 62
VP+ F + Q I+LQ + ++W K S K++ GW +FA +KL +GD
Sbjct: 215 VPSQFANNHMKKEQSDILLQLLDGRVWDAKYC------SAKINGGWKKFAVHNKLKIGDV 268
Query: 63 CVFELINKEDPVLDVHIFR 81
C+FEL + L V IFR
Sbjct: 269 CIFELTKSQYLTLKVIIFR 287
>Medtr1g035490.1 | B3 DNA-binding domain protein | LC |
chr1:12887655-12885322 | 20130731
Length = 332
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 4 VPNPFIREYFNDMQQTIMLQYEKKLWPVKLICYPKKGSGKLSKGWVEFAGKSKLVVGDAC 63
VP F+++ N + + L+ +K W VK+ Y + +KGW +F + K+ +GD C
Sbjct: 254 VPKEFMKKGSN--ENIVELKMGRKSWFVKVNYYESVHGWRFNKGWRKFMEECKVEIGDTC 311
Query: 64 VFELINKEDPVLDVHIF-RGH 83
+F LI++ V DV I R H
Sbjct: 312 LFNLIDERKFVFDVSIIGRTH 332