Miyakogusa Predicted Gene

Lj0g3v0353979.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0353979.1 CUFF.24365.1
         (126 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g464720.1 | clathrin heavy chain | HC | chr3:26022646-2603...   131   2e-31
Medtr3g070940.1 | clathrin heavy chain | HC | chr3:31838485-3185...   124   2e-29
Medtr5g082900.2 | clathrin heavy chain | HC | chr5:35734650-3574...   120   4e-28
Medtr5g082900.1 | clathrin heavy chain | HC | chr5:35730564-3574...   119   5e-28
Medtr5g071810.1 | clathrin heavy chain | HC | chr5:30503163-3049...   102   7e-23
Medtr5g071833.1 | clathrin heavy chain | HC | chr5:30543506-3053...   102   7e-23

>Medtr3g464720.1 | clathrin heavy chain | HC | chr3:26022646-26033994
            | 20130731
          Length = 1704

 Score =  131 bits (329), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/76 (82%), Positives = 67/76 (88%)

Query: 47   VERVDADLWEKVLTPENEFRRQLIDQVVSTALPESKSPDQISAAVKAFRTADLPHELIEL 106
            VER+DADLW+KVL PENEFRRQLIDQVVSTALPESKSPDQ+SAAVKAF TADLPHELIEL
Sbjct: 961  VERMDADLWDKVLNPENEFRRQLIDQVVSTALPESKSPDQVSAAVKAFMTADLPHELIEL 1020

Query: 107  LEKFVLQNYVIAETLN 122
            LEK VLQN   +   N
Sbjct: 1021 LEKIVLQNSAFSGNFN 1036


>Medtr3g070940.1 | clathrin heavy chain | HC | chr3:31838485-31851792
            | 20130731
          Length = 1705

 Score =  124 bits (312), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/76 (77%), Positives = 66/76 (86%)

Query: 47   VERVDADLWEKVLTPENEFRRQLIDQVVSTALPESKSPDQISAAVKAFRTADLPHELIEL 106
            VER+DADLWEKVL P+N +RRQLIDQVVSTALPESKSP+Q+SA+VKAF TADLPHELIEL
Sbjct: 963  VERMDADLWEKVLNPDNTYRRQLIDQVVSTALPESKSPEQVSASVKAFMTADLPHELIEL 1022

Query: 107  LEKFVLQNYVIAETLN 122
            LEK VLQN   +   N
Sbjct: 1023 LEKIVLQNSAFSGNFN 1038


>Medtr5g082900.2 | clathrin heavy chain | HC |
           chr5:35734650-35744089 | 20130731
          Length = 1430

 Score =  120 bits (300), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 56/81 (69%), Positives = 66/81 (81%)

Query: 44  QICVERVDADLWEKVLTPENEFRRQLIDQVVSTALPESKSPDQISAAVKAFRTADLPHEL 103
           +  VER+D DLW+KVL P+NE+RRQLIDQVVSTALPES SP+Q+SA V+AF TADLPHEL
Sbjct: 683 RYVVERMDGDLWDKVLNPDNEYRRQLIDQVVSTALPESSSPEQVSATVRAFMTADLPHEL 742

Query: 104 IELLEKFVLQNYVIAETLNCK 124
           IELLEK VLQN   +   N +
Sbjct: 743 IELLEKIVLQNSAFSGNHNLQ 763


>Medtr5g082900.1 | clathrin heavy chain | HC | chr5:35730564-35744138
            | 20130731
          Length = 1706

 Score =  119 bits (299), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 56/81 (69%), Positives = 66/81 (81%)

Query: 44   QICVERVDADLWEKVLTPENEFRRQLIDQVVSTALPESKSPDQISAAVKAFRTADLPHEL 103
            +  VER+D DLW+KVL P+NE+RRQLIDQVVSTALPES SP+Q+SA V+AF TADLPHEL
Sbjct: 959  RYVVERMDGDLWDKVLNPDNEYRRQLIDQVVSTALPESSSPEQVSATVRAFMTADLPHEL 1018

Query: 104  IELLEKFVLQNYVIAETLNCK 124
            IELLEK VLQN   +   N +
Sbjct: 1019 IELLEKIVLQNSAFSGNHNLQ 1039


>Medtr5g071810.1 | clathrin heavy chain | HC |
           chr5:30503163-30494257 | 20130731
          Length = 1397

 Score =  102 bits (255), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 49/78 (62%), Positives = 60/78 (76%)

Query: 47  VERVDADLWEKVLTPENEFRRQLIDQVVSTALPESKSPDQISAAVKAFRTADLPHELIEL 106
           +ER+D  LW++VL P N FRRQLIDQVVSTALP+ KSPDQ+SAAVKAF TA+L HE+I+L
Sbjct: 560 MERMDGGLWKEVLNPGNVFRRQLIDQVVSTALPKCKSPDQVSAAVKAFMTANLTHEVIDL 619

Query: 107 LEKFVLQNYVIAETLNCK 124
           L+K VL N   +     K
Sbjct: 620 LDKIVLHNSAFSANFTLK 637


>Medtr5g071833.1 | clathrin heavy chain | HC |
           chr5:30543506-30534600 | 20130731
          Length = 1365

 Score =  102 bits (255), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 49/78 (62%), Positives = 60/78 (76%)

Query: 47  VERVDADLWEKVLTPENEFRRQLIDQVVSTALPESKSPDQISAAVKAFRTADLPHELIEL 106
           +ER+D  LW++VL P N FRRQLIDQVVSTALP+ KSPDQ+SAAVKAF TA+L HE+I+L
Sbjct: 560 MERMDGGLWKEVLNPGNVFRRQLIDQVVSTALPKCKSPDQVSAAVKAFMTANLTHEVIDL 619

Query: 107 LEKFVLQNYVIAETLNCK 124
           L+K VL N   +     K
Sbjct: 620 LDKIVLHNSAFSANFTLK 637