Miyakogusa Predicted Gene

Lj0g3v0353889.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0353889.2 tr|D7KU36|D7KU36_ARALL DNA-directed RNA
polymerase OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT,27.49,4e-18,seg,NULL; beta and beta-prime subunits of
DNA dependent RNA-polymerase,NULL,CUFF.24477.2
         (788 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g038990.1 | DNA-directed RNA polymerase | HC | chr8:144590...   763   0.0  
Medtr5g011000.1 | DNA-directed RNA polymerase | HC | chr5:306076...    92   2e-18

>Medtr8g038990.1 | DNA-directed RNA polymerase | HC |
            chr8:14459096-14475944 | 20130731
          Length = 2010

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/934 (49%), Positives = 556/934 (59%), Gaps = 214/934 (22%)

Query: 2    LEELKINMAEVFQRCQEKLRSLNRKRKYYQTLKSTELFFSESCASPNFSSPCVTFISLDG 61
            LEELKINM EV+Q+CQEKL S +RK+K     K TEL FSE C     S+PCVTF+  DG
Sbjct: 975  LEELKINMTEVYQKCQEKLNSFSRKKKLSPFFKRTELIFSEFC-----SAPCVTFLWPDG 1029

Query: 62   DGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNGELALDI 121
              LD+TT++LAD+ICPVLL TIIQGDPRISSA+I W+NP +N WVRNPSKSSNGELALD+
Sbjct: 1030 VDLDQTTKVLADMICPVLLETIIQGDPRISSASIIWVNPGTNTWVRNPSKSSNGELALDV 1089

Query: 122  ILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAA 181
            ILE+ AVKQSGDAWRIVLDSCLPVL+LIDTRRSIPYAIKQ+QELLGI+CTFDQAIQRLAA
Sbjct: 1090 ILEKEAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGIACTFDQAIQRLAA 1149

Query: 182  SVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCF 241
            SV+MVAKGVLREHLILLASSMTCGGNLVGFNTGGYK LARQL+IQVPFTDATLFTP+KCF
Sbjct: 1150 SVRMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKTLARQLDIQVPFTDATLFTPRKCF 1209

Query: 242  ERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFLHMVK 301
            ERAAEK H+DSLSSIVASCSWGK VAVGTGS+FD++WD KE K+NE+EGM+VY FL+MVK
Sbjct: 1210 ERAAEKHHSDSLSSIVASCSWGKHVAVGTGSKFDIVWDPKEIKTNEIEGMNVYKFLNMVK 1269

Query: 302  SLINGEEENDACXXXXXXXXXXXXNADYSLSPQHTSGVDAVFEETFEAMNGPESNGWGAT 361
             L NGEEE +AC            N D+ +SPQH SG DAVF+ETFE  NG  SNGW + 
Sbjct: 1270 GLANGEEETNACLGEDIDDLFDDENGDFDMSPQHASGFDAVFDETFELPNGSTSNGWDSN 1329

Query: 362  TDRTE---TKSTQWSAWESNKAETKDGGSQRVHEDSWTSRDVMKDDSQMTNAWDGNVEQT 418
             D+ +   T S  WS W  NK++ +               DV+++DS  ++AW     Q 
Sbjct: 1330 KDQIDQPNTNSNDWSGWGPNKSDLQ--------------VDVIQEDSSKSSAWGAATNQK 1375

Query: 419  KTISNDWTAWGKNKSEIQDNVAEKAEGECG-------------------SSEMWKTAVIQ 459
               S   +AWGK   + +D+    A G                      S+  W  AV+Q
Sbjct: 1376 SDQSA--SAWGKAVVQ-EDSSKSGAWGTATNQNSQQPSWGAATNQKSDQSASAWGKAVVQ 1432

Query: 460  EGSSKSNAW----------------KSNIEQRSDEDSW---------------TSQKLKA 488
            E SSKS AW                 +N    SD+  W                ++K KA
Sbjct: 1433 EDSSKSGAWGNAKSVVQEDSSKSGAPANTNHSSDQSCWGQITGGEERAQGESGGTKKWKA 1492

Query: 489  DVIQ-DSSKPSSWGAKPKSNDSSNWGRNKDEIQDVVSRRAEDDSWSSKK-QLSSDATQED 546
            DV Q DS+    W A         WG +K E+ +  S + + DSW+S+K +   D TQ+D
Sbjct: 1493 DVSQEDSTNSGGWKA---------WGSSKPEVHEGESTKVQ-DSWNSQKWKAGEDVTQKD 1542

Query: 547  SSKFSFWGGNKDTTKPKSND----------WSSWGGNRDGIQDGGSKRAQDDSWSSQK-- 594
            S K S WG     TK KSND          W +WG ++  + +G S + Q DSW+SQK  
Sbjct: 1543 SQKSSAWGA----TKLKSNDIQEDSTNSGGWKAWGSSKPEVHEGESTKVQ-DSWNSQKWK 1597

Query: 595  ---DVTRESSSKVDAWGANNEASNPKSND-WSAWGKNKDGTQDGGSERAQDDSSSLGKWK 650
               DV+++ S K  AWG    A+ PKSND  S+WG+ KD                     
Sbjct: 1598 AAEDVSQKDSQKSSAWG----ATKPKSNDNRSSWGQKKD--------------------- 1632

Query: 651  AESQVEADTVQEDSSKSKAWERNSDNVK--------VGNSSWGKPKFPETQAWDPQKETN 702
                 E   + EDSS+S AWE+  +NVK        V NSSWGK K PE + WD + E N
Sbjct: 1633 -----EIHVMPEDSSRSNAWEQKPENVKDSWVAKVPVANSSWGKAKSPENRPWDSKNEPN 1687

Query: 703  QGAG---------------------------SRGWDS----------------------- 712
               G                           S+ WDS                       
Sbjct: 1688 NSFGKPNSQENEPWDSKNESDSSWGKPKSQESQPWDSKNESNSSWGKPKSQENHPWDSKN 1747

Query: 713  -------------QIASANSDSDRNFQWGKQGRESFKK-----SQGWGSNAGDMKNKNRP 754
                         Q+ASANS+SD++FQWGKQGR+SFKK     SQ  G NAGD KN++RP
Sbjct: 1748 ESNQTAGSRGWDSQVASANSESDKSFQWGKQGRDSFKKNRFEGSQSGGPNAGDWKNRSRP 1807

Query: 755  GRAPGPRLDMYSSEEQDILKDIEPIVQSIRRIMQ 788
             R PG R ++Y+ EEQDI+KDIEPIVQSIRRIMQ
Sbjct: 1808 VRPPGQRFELYTPEEQDIMKDIEPIVQSIRRIMQ 1841


>Medtr5g011000.1 | DNA-directed RNA polymerase | HC |
            chr5:3060764-3075383 | 20130731
          Length = 1519

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 7/223 (3%)

Query: 75   ICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNGELALDIILEEAAVKQSGDA 134
            + P LL T I+G   I   +I W +      V      S GEL L + +       +G  
Sbjct: 1093 LIPFLLQTAIKGFLEIKKVDILWKDLPK---VTKSYNGSAGELYLRVTMSSG--NDNGTF 1147

Query: 135  WRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMVAKGVLREH 194
            W  +++ C  ++ LID  RS P  I       GI   +      L+++     K +L +H
Sbjct: 1148 WGRLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYFHNLSSATSDTGKSILPKH 1207

Query: 195  LILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLS 254
            L L+A+S++  G  VG N  G     +  ++  PF  A    P   F +AA+    D+L 
Sbjct: 1208 LRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPGSSFLKAAKSGIVDNLQ 1267

Query: 255  SIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFL 297
              + + +WG  + +GTG +FD+++  K  + N  + +DVY  L
Sbjct: 1268 GNLDALAWGNCLPMGTGGQFDIIYSEKVEEIN--KSVDVYGLL 1308