Miyakogusa Predicted Gene
- Lj0g3v0353419.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0353419.1 Non Characterized Hit- tr|I1KAJ3|I1KAJ3_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,88.22,0,seg,NULL;
Translation proteins SH3-like domain,Translation protein SH3-like; KOW
(Kyprides, Ouzounis,CUFF.24327.1
(764 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g089910.1 | transcription elongation factor SPT5-like prot... 1253 0.0
Medtr1g023870.1 | transcription elongation factor SPT5-like prot... 340 3e-93
Medtr1g023975.1 | global transcription factor group protein | HC... 135 1e-31
Medtr1g111560.1 | transcription elongation factor Spt5-like prot... 115 2e-25
Medtr7g050470.1 | transcription elongation factor SPT5-like prot... 72 3e-12
Medtr7g450740.1 | transcription elongation factor SPT5, putative... 51 5e-06
>Medtr3g089910.1 | transcription elongation factor SPT5-like protein,
putative | HC | chr3:40863011-40870564 | 20130731
Length = 1040
Score = 1253 bits (3242), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/767 (81%), Positives = 669/767 (87%), Gaps = 7/767 (0%)
Query: 1 MTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRVDLQALADK 60
MTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRV VKLIPR+DLQALA+K
Sbjct: 262 MTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVRVKLIPRIDLQALANK 321
Query: 61 LEGKEVVKKKAFIPPPRFMNVDEARELHIRVENKKDSYG-ERYDAIGGMMFKDGFLYKIV 119
LEG+EVVKKKAF+PPPRFMNV+EARELHIRVE+++D+ G ER+D IGGMMFKDGFLYK V
Sbjct: 322 LEGREVVKKKAFVPPPRFMNVEEARELHIRVEHRRDATGGERFDTIGGMMFKDGFLYKSV 381
Query: 120 SIKSISAQNINPTFDELDKFRKPGDGGDGDVASLSTLFANRKKGHFMKGDAVIVVKGDLK 179
SIKS+ +QNI PTFDEL+KFRKPG+ GDVASLSTLFANRKKGHFMKGDAVIV+KGDLK
Sbjct: 382 SIKSLYSQNIKPTFDELEKFRKPGE--TGDVASLSTLFANRKKGHFMKGDAVIVIKGDLK 439
Query: 180 NLKGWVEKVDEDNVHIKPELKDLPKTLAFNEKELCKYFEPGNHVKVVSGAQEGATGMVVK 239
NLKGWVEKVDEDNVHI+PE+KDLPKTLA NEKELCKYFEPGNHVKVVSGAQEGATGMVVK
Sbjct: 440 NLKGWVEKVDEDNVHIRPEMKDLPKTLAVNEKELCKYFEPGNHVKVVSGAQEGATGMVVK 499
Query: 240 VDQHVLILISDTTKEHIRVFADDVVESSEVTTGITKIGDYELRDLVELDNSNFGVIIRVE 299
V+QHVLILISDTTKEHIR FADDVVESSEVTTG+TKIGDYELRDLV LDNS+FGVIIRVE
Sbjct: 500 VEQHVLILISDTTKEHIRAFADDVVESSEVTTGVTKIGDYELRDLVLLDNSSFGVIIRVE 559
Query: 300 SEAVQVLKGVPDRPEVVLVKLREIKRKIDRKMSVQDKLKNTVSSKDVVRIVEGPCRGKQG 359
SEA QVLKGV DRPEVVLVKLREIK K+++K++VQDK +NTVSSKDVVRI+EGPC+G QG
Sbjct: 560 SEAFQVLKGVTDRPEVVLVKLREIKCKLEKKINVQDKFRNTVSSKDVVRILEGPCKGNQG 619
Query: 360 PVEHIYRRILFIFDRHHLEHAGFICAKAQSCXXXXXXXXXXDRNGDAYSKLSAFRTPPPI 419
VEHIYR +LF+FDRHHLEHAGF+C KAQSC DRNGD +S+ RTPP I
Sbjct: 620 SVEHIYRGVLFVFDRHHLEHAGFMCVKAQSCVVVGGSRSNSDRNGDVHSRFPGLRTPPRI 679
Query: 420 PDSPKXXXXXXXXXXXXXXXXXXXXXXXXXXXTTVKVRQGPYKGYRGRVIEVKGAMVRVE 479
P SP TVKVRQG YKGYRGRVIEVKG+ VRVE
Sbjct: 680 PQSPH-RFSRGGPPSAGGRHNRGGRGHDGLTGATVKVRQGSYKGYRGRVIEVKGSFVRVE 738
Query: 480 LESQMKVVTVDRNHISDNVAVTPYRDT-TRYGMGSETPMHPSRTPLHPYMTPMRDPGATP 538
LESQMKVVTVDRNHISDNVAVTP R+T +RYGMGSETPMHPSRTPLHPYMTPMRD GATP
Sbjct: 739 LESQMKVVTVDRNHISDNVAVTPQRETSSRYGMGSETPMHPSRTPLHPYMTPMRDAGATP 798
Query: 539 IHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGASPQYQPGSPPSRPYEAPTPGAGW 598
IHDGMRTPMRDRAWNPY PMSPPRDNWEDGNPGSWGASPQYQPGSPPSRPYEAPTPGAGW
Sbjct: 799 IHDGMRTPMRDRAWNPYAPMSPPRDNWEDGNPGSWGASPQYQPGSPPSRPYEAPTPGAGW 858
Query: 599 ASTPGGNYSEAGTPRDNSAYANAPSPYLPSTPGGQPMTPNSASYLXXXXXXXXXXXXXXX 658
ASTPGGNYSEAGTPRD+SAYANAPSPYLPSTP GQPMTPNSASYL
Sbjct: 859 ASTPGGNYSEAGTPRDSSAYANAPSPYLPSTP-GQPMTPNSASYLPGTPGGQPMTPGTGG 917
Query: 659 LDMMSPVLGGDNEGPWFIPDILVNVHRGGEESIGVIKEILQDGSCRVALGPSGNGETLTV 718
LD+MSPVLGGDNEGPWF+PDILVNVHR GEES+GVIKE+L DGS RVALG +GNGET++
Sbjct: 918 LDIMSPVLGGDNEGPWFMPDILVNVHRAGEESVGVIKEVLPDGSYRVALGSNGNGETISA 977
Query: 719 LPTEMEAVVPRKSDKIKIMGGA-LRGATGKLIGVDGTDGIVKVDDTL 764
L E+EAVVPRKSDKIKIMGG LRG+TGKLIGVDGTDGIVKVDDTL
Sbjct: 978 LSNEVEAVVPRKSDKIKIMGGGTLRGSTGKLIGVDGTDGIVKVDDTL 1024
>Medtr1g023870.1 | transcription elongation factor SPT5-like
protein, putative | HC | chr1:7745970-7748704 | 20130731
Length = 247
Score = 340 bits (872), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 175/232 (75%), Positives = 188/232 (81%), Gaps = 15/232 (6%)
Query: 547 MRDRAWNPYTPMSPPRDNWEDGNPGSWGASPQYQPGSPPSRPYEAPTPGAGWASTPGGNY 606
MRDRAWNPYTPMSPPRDNWEDGNPGSWGA+P YQPGSPPS+PYEAPTPGAGWAST GGNY
Sbjct: 1 MRDRAWNPYTPMSPPRDNWEDGNPGSWGANPHYQPGSPPSQPYEAPTPGAGWASTSGGNY 60
Query: 607 SEAGTPRDNSAY--------------ANAPSPYLPSTPGGQPMTPNSASYLXXXXXXXXX 652
SEAGTPRD+SAY NAPSPYLPSTPG QPMTP+SASYL
Sbjct: 61 SEAGTPRDSSAYVFTNSIWTDADCITTNAPSPYLPSTPG-QPMTPSSASYLPGTPGGQPM 119
Query: 653 XXXXXXLDMMSPVLGGDNEGPWFIPDILVNVHRGGEESIGVIKEILQDGSCRVALGPSGN 712
LD+MSPVLGGDNEGP F+PDILVNVHR EES+GVIKE+L DGS RVALG SGN
Sbjct: 120 TPGIGGLDVMSPVLGGDNEGPSFMPDILVNVHRTREESVGVIKEVLPDGSYRVALGSSGN 179
Query: 713 GETLTVLPTEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTL 764
GET++ L E+EAVVPRKSDKIKI+GG L G+TGKLIGVDGTDGIVKVDDTL
Sbjct: 180 GETISALSNEVEAVVPRKSDKIKIIGGELSGSTGKLIGVDGTDGIVKVDDTL 231
>Medtr1g023975.1 | global transcription factor group protein | HC |
chr1:7742965-7743951 | 20130731
Length = 193
Score = 135 bits (340), Expect = 1e-31, Method: Composition-based stats.
Identities = 65/72 (90%), Positives = 71/72 (98%)
Query: 1 MTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRVDLQALADK 60
MTDVLSVESKAIDLARDTW+RMKIGTYKGDLAKVV+VDNVRQ+VTVKLIPR+DLQALA+K
Sbjct: 118 MTDVLSVESKAIDLARDTWIRMKIGTYKGDLAKVVNVDNVRQKVTVKLIPRIDLQALANK 177
Query: 61 LEGKEVVKKKAF 72
LEG+EVVKKK F
Sbjct: 178 LEGREVVKKKTF 189
>Medtr1g111560.1 | transcription elongation factor Spt5-like
protein, putative | HC | chr1:50409508-50417420 |
20130731
Length = 1326
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 101/177 (57%), Gaps = 8/177 (4%)
Query: 4 VLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRVDLQALADKLEG 63
+ SV+ K +++ W R+K G YKGDLA+VV V+N ++VTVKL+PR+DL ALA K G
Sbjct: 228 LFSVKIKKPEISEGMWGRVKGGNYKGDLAQVVAVNNTHKKVTVKLVPRIDLFALAAKFGG 287
Query: 64 KEVVKKKAFIPPPRFMNVDEARELHIRVENKKD-SYGERYDAIGGMMFKDGFLYKIVSIK 122
++KA +P PR ++ E E ++ K D G+ + + GM+ KDGFLYK VS
Sbjct: 288 G--CRQKAAVPAPRLISSTELEEFRPLIQIKHDRETGKVFQVLDGMLLKDGFLYKKVSPD 345
Query: 123 SISAQNINPTFDELDKFRKPGDGGDGDVASLSTLFANRKKGHFMKGDAVIVVKGDLK 179
S+S + PT +EL KF + D+ LS ++ + KK I KGD K
Sbjct: 346 SLSFWGVVPTEEELLKFGSSENNDSNDMEWLSNIYGDTKKKRV-----TIADKGDGK 397
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/352 (26%), Positives = 144/352 (40%), Gaps = 32/352 (9%)
Query: 241 DQHVLILISDTTKEHIRVFADDVVESSEVTTGITKIGDYELRDLVELDNSNFGVIIRVES 300
D L I TK+ AD E ++ D+EL LV +FGVII +
Sbjct: 372 DMEWLSNIYGDTKKKRVTIADKGDGKGEGSSASGAGNDFELYALVRFRKKDFGVIISTDK 431
Query: 301 EAV-QVLKGVPDRPEVVLVKLREIKRKI-DRKMSVQDKLKNTVSSKDVVRIVEGPCRGKQ 358
+ ++LK + P V V+ EIK + D K+S QD + T+ D V++++GP +GKQ
Sbjct: 432 DGTYKILKESSEGPVAVTVQRNEIKSALCDLKLSAQDLHRKTIVVNDNVKVLDGPSQGKQ 491
Query: 359 GPVEHIYRRILFIFDRHHLEHAGFICAKAQSCXXXXXXXXXXDRNGDAYSKLSAFRTPPP 418
G V HIY+ I+F++D + E+ G++ AKA C +S + P P
Sbjct: 492 GIVRHIYQGIVFLYDGNEEENGGYVTAKAIMCEKVKLAVSD-------FSAIGKDSEPGP 544
Query: 419 IPDSPKXXXXXXXXXXXXXXXXXXXXXXXXXXXTTVKVRQ------GPYKGYRGRVIEVK 472
+ + + + Q GP KGY RV ++
Sbjct: 545 LVFDDQPSSPRSPLSPKKPWQAKEKDFNRGDSDSLFAIGQTLRIRIGPLKGYLCRVTGIR 604
Query: 473 GAMVRVELESQMKVVTVDRNHISDNVAVTPYRDTTRYGMGSETPMHPSRTPLHPY-MTPM 531
+ V V+L+SQ K +TV H+S V + T G P + L+P+ +
Sbjct: 605 RSDVTVKLDSQQKFLTVKSEHLS----VVQGKSTAVSASG-----DPDSSSLNPFDLLGA 655
Query: 532 RDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGASPQYQPGS 583
+++ T WN S R W GNP ++P PGS
Sbjct: 656 EGSSGGWLNNSAGTSTGSGGWNA-GETSGERSAW--GNP----SAPSSVPGS 700
>Medtr7g050470.1 | transcription elongation factor SPT5-like
protein, putative | LC | chr7:16835096-16837074 |
20130731
Length = 241
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 63/105 (60%), Gaps = 3/105 (2%)
Query: 161 KKGHFMKGDAVIVVKGDLKNLKGWVEKVDEDNVHIKPELKDLPKTLAFNEKELCKYFEPG 220
KK F KGD V+V G+ + V+KV+E V I+ + L + ++ K+F+ G
Sbjct: 135 KKQQFRKGDIVMVTDGETEGKIKVVDKVEEGYVLIRA-IDHLSGSYEVQTSQIRKHFKEG 193
Query: 221 NHVKVVSGAQEGATGMVVKVDQH-VLILISDTTKEHIRVFADDVV 264
+ VKVVSG EG TG VVKVDQH L+L +DT KE I V ADD V
Sbjct: 194 DRVKVVSGTDEGETGFVVKVDQHDHLVLFTDTRKE-ICVLADDAV 237
>Medtr7g450740.1 | transcription elongation factor SPT5, putative |
LC | chr7:16945831-16945386 | 20130731
Length = 102
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 48/96 (50%), Gaps = 21/96 (21%)
Query: 159 NRKKGHFMKGDAVIVVKGDLKNLKGWVEKVDEDNVHIKPELKDLPKTLAFNEKELCKYFE 218
N KK F GD V+V G+ + IK K ++ K+F+
Sbjct: 27 NGKKQKFRTGDIVMVTDGETEG-------------QIKGSYK-------VTTSQIRKHFK 66
Query: 219 PGNHVKVVSGAQEGATGMVVKVDQH-VLILISDTTK 253
G+ VKVVSG +EG TG VVKVDQH L+L +DT K
Sbjct: 67 EGDRVKVVSGTKEGETGFVVKVDQHDHLVLFTDTLK 102