Miyakogusa Predicted Gene

Lj0g3v0352669.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0352669.2 Non Characterized Hit- tr|I1JVH7|I1JVH7_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,80,0,GTP-BINDING
PROTEIN ERA HOMOLOG (HERA)(ERA-W)(CONSERVED ERA-LIKE
GTPASE)(CEGA),NULL; MSS1/TRME-RELAT,CUFF.24265.2
         (325 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g073790.1 | tRNA modification GTPase trmE | HC | chr3:3330...   456   e-128

>Medtr3g073790.1 | tRNA modification GTPase trmE | HC |
           chr3:33306093-33311427 | 20130731
          Length = 543

 Score =  456 bits (1173), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/324 (72%), Positives = 261/324 (80%), Gaps = 14/324 (4%)

Query: 1   MASLRVVFRHI-HINMNHCYSTSPRPMGGLLLHRRDTWRRRCNSVKPRACSDNHHRSYRV 59
           M+S R+VFRHI H  +N+ + T P          R TWR    S +  + ++    SY V
Sbjct: 5   MSSFRIVFRHILHTKINNRFFTPPP---------RTTWRHSLLSSRISSSTN---YSYNV 52

Query: 60  VLNKDERLGERV-GHNNTTELGNSTTTIAAIVTSLGGPPAAVGIVRLSGPHAVSIAGRVF 118
           + NKDERL E++   NN T +  ++TTIAAIVTSLGGPPAAVGIVRLSGPHAVSIAGRVF
Sbjct: 53  ITNKDERLLEQIENDNNNTNVVANSTTIAAIVTSLGGPPAAVGIVRLSGPHAVSIAGRVF 112

Query: 119 RPGRSTWRPTSHVVEYGVVFDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRR 178
           RP R+TWRPTSHVVEYGVV DSDGNV+DEV+AVPMLAPRSYTREDVVELQCHG+EVCLRR
Sbjct: 113 RPARNTWRPTSHVVEYGVVLDSDGNVVDEVIAVPMLAPRSYTREDVVELQCHGNEVCLRR 172

Query: 179 VLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENXXXXXXXXXXXXXXXXXXGIQGGFS 238
           VLR CLEAGATLAQPGEFTLRAFLNGRLDLSQAEN                  GIQGGFS
Sbjct: 173 VLRICLEAGATLAQPGEFTLRAFLNGRLDLSQAENVGKLIAAKSVAAADAALEGIQGGFS 232

Query: 239 SLVRSLRIQCIELLTEIEARLDFDDEMPPLNLNQIMEKIHNMSRDVENALETANYDKLLQ 298
           SLVRSLR QCI+LLTEIEARLDF+DEMPPL+LN IM+KIH+MS+DVENALETANYDKLLQ
Sbjct: 233 SLVRSLRNQCIDLLTEIEARLDFEDEMPPLDLNGIMDKIHHMSQDVENALETANYDKLLQ 292

Query: 299 SGLQIAIVGRPNVGKSSLLNAWSK 322
           SGLQIAIVGRPNVGKSSLLNAWSK
Sbjct: 293 SGLQIAIVGRPNVGKSSLLNAWSK 316