Miyakogusa Predicted Gene
- Lj0g3v0352669.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0352669.1 tr|G8A389|G8A389_MEDTR tRNA modification GTPase
mnmE OS=Medicago truncatula GN=MTR_146s0004 PE=3
SV=,81.75,0,GTP-BINDING PROTEIN ERA HOMOLOG (HERA)(ERA-W)(CONSERVED
ERA-LIKE GTPASE)(CEGA),NULL; MSS1/TRME-RELAT,CUFF.24265.1
(546 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g073790.1 | tRNA modification GTPase trmE | HC | chr3:3330... 865 0.0
Medtr4g065030.1 | GTPase Der protein | HC | chr4:24379001-243866... 83 8e-16
Medtr4g065030.3 | GTPase Der protein | HC | chr4:24379001-243866... 83 8e-16
Medtr4g065030.2 | GTPase Der protein | HC | chr4:24379001-243866... 83 8e-16
Medtr4g134500.1 | ribosome-associated GTPase EngA | HC | chr4:56... 61 2e-09
Medtr8g077125.1 | GTP-binding protein Era protein | HC | chr8:32... 52 1e-06
>Medtr3g073790.1 | tRNA modification GTPase trmE | HC |
chr3:33306093-33311427 | 20130731
Length = 543
Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/548 (79%), Positives = 472/548 (86%), Gaps = 14/548 (2%)
Query: 1 MASLRVVFRHI-HINMNHCYSTSPRPMGGLLLHRRDTWRRRCNSVKPRACSDNHHRSYRV 59
M+S R+VFRHI H +N+ + T P R TWR S + + ++ SY V
Sbjct: 5 MSSFRIVFRHILHTKINNRFFTPPP---------RTTWRHSLLSSRISSSTN---YSYNV 52
Query: 60 VLNKDERLGERV-GHNNTTELGNSTTTIAAIVTSLGGPPAAVGIVRLSGPHAVSIAGRVF 118
+ NKDERL E++ NN T + ++TTIAAIVTSLGGPPAAVGIVRLSGPHAVSIAGRVF
Sbjct: 53 ITNKDERLLEQIENDNNNTNVVANSTTIAAIVTSLGGPPAAVGIVRLSGPHAVSIAGRVF 112
Query: 119 RPGRSTWRPTSHVVEYGVVFDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRR 178
RP R+TWRPTSHVVEYGVV DSDGNV+DEV+AVPMLAPRSYTREDVVELQCHG+EVCLRR
Sbjct: 113 RPARNTWRPTSHVVEYGVVLDSDGNVVDEVIAVPMLAPRSYTREDVVELQCHGNEVCLRR 172
Query: 179 VLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENXXXXXXXXXXXXXXXXXXGIQGGFS 238
VLR CLEAGATLAQPGEFTLRAFLNGRLDLSQAEN GIQGGFS
Sbjct: 173 VLRICLEAGATLAQPGEFTLRAFLNGRLDLSQAENVGKLIAAKSVAAADAALEGIQGGFS 232
Query: 239 SLVRSLRIQCIELLTEIEARLDFDDEMPPLNLNQIMEKIHNMSRDVENALETANYDKLLQ 298
SLVRSLR QCI+LLTEIEARLDF+DEMPPL+LN IM+KIH+MS+DVENALETANYDKLLQ
Sbjct: 233 SLVRSLRNQCIDLLTEIEARLDFEDEMPPLDLNGIMDKIHHMSQDVENALETANYDKLLQ 292
Query: 299 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVNGIPITLLDTAGI 358
SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASI++NGIPITLLDTAGI
Sbjct: 293 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASININGIPITLLDTAGI 352
Query: 359 RDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTAEDTKLLERIQSTKESTGSSTPAI 418
RDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWT+EDTKLLERIQS KESTGSSTP I
Sbjct: 353 RDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSAKESTGSSTPVI 412
Query: 419 LVVNKIDCKPCAETEWDKGCHGHNFFSKSVFTCAVTGQGLQDLESTVLEMVGLDVVPAGG 478
LVVNKIDCKPCAETEWDKG H H FSK VFTCAVT QGLQDLE VLE+VG+D + +GG
Sbjct: 413 LVVNKIDCKPCAETEWDKGMHSHKIFSKQVFTCAVTSQGLQDLERAVLEIVGMDGIASGG 472
Query: 479 RRWTVNQRQCEQLVRTKEALSRLQSSIREELPLDFWTIDLKDAAMSLGQINGEDISEEVL 538
RRWTVNQRQCEQLVRTKEAL RLQSSI+EELP+DFWTIDL+DAA+SLGQI+GEDISEEVL
Sbjct: 473 RRWTVNQRQCEQLVRTKEALVRLQSSIKEELPMDFWTIDLRDAALSLGQISGEDISEEVL 532
Query: 539 SNIFGKFC 546
SNIFGKFC
Sbjct: 533 SNIFGKFC 540
>Medtr4g065030.1 | GTPase Der protein | HC | chr4:24379001-24386634
| 20130731
Length = 646
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 77/133 (57%), Gaps = 13/133 (9%)
Query: 303 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASIS-VNGIPITLLDTAGIRDT 361
I+IVGRPNVGKSS+LNA +R IV+ I+GTTRD I+ + +G L+DTAGIR
Sbjct: 349 ISIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPDGQKFHLIDTAGIRKR 408
Query: 362 DDI------VEKIGVERSEAVARGADLIIMTVSAVEGWTAEDTKLLERIQSTKESTGSST 415
+ E + V R+ R +D++ + + A+ T +D K+ ERI+ KE G
Sbjct: 409 TTVASAGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYKIAERIE--KEGKG--- 463
Query: 416 PAILVVNKIDCKP 428
++VVNK D P
Sbjct: 464 -CVIVVNKWDTIP 475
>Medtr4g065030.3 | GTPase Der protein | HC | chr4:24379001-24386603
| 20130731
Length = 646
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 77/133 (57%), Gaps = 13/133 (9%)
Query: 303 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASIS-VNGIPITLLDTAGIRDT 361
I+IVGRPNVGKSS+LNA +R IV+ I+GTTRD I+ + +G L+DTAGIR
Sbjct: 349 ISIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPDGQKFHLIDTAGIRKR 408
Query: 362 DDI------VEKIGVERSEAVARGADLIIMTVSAVEGWTAEDTKLLERIQSTKESTGSST 415
+ E + V R+ R +D++ + + A+ T +D K+ ERI+ KE G
Sbjct: 409 TTVASAGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYKIAERIE--KEGKG--- 463
Query: 416 PAILVVNKIDCKP 428
++VVNK D P
Sbjct: 464 -CVIVVNKWDTIP 475
>Medtr4g065030.2 | GTPase Der protein | HC | chr4:24379001-24386634
| 20130731
Length = 646
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 77/133 (57%), Gaps = 13/133 (9%)
Query: 303 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASIS-VNGIPITLLDTAGIRDT 361
I+IVGRPNVGKSS+LNA +R IV+ I+GTTRD I+ + +G L+DTAGIR
Sbjct: 349 ISIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPDGQKFHLIDTAGIRKR 408
Query: 362 DDI------VEKIGVERSEAVARGADLIIMTVSAVEGWTAEDTKLLERIQSTKESTGSST 415
+ E + V R+ R +D++ + + A+ T +D K+ ERI+ KE G
Sbjct: 409 TTVASAGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYKIAERIE--KEGKG--- 463
Query: 416 PAILVVNKIDCKP 428
++VVNK D P
Sbjct: 464 -CVIVVNKWDTIP 475
>Medtr4g134500.1 | ribosome-associated GTPase EngA | HC |
chr4:56328156-56322710 | 20130731
Length = 545
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 285 ENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASIS 344
E++ A+ KL LQ+AIVGRPNVGKS+LLN + +R +V AG TRD I
Sbjct: 225 ESSFPEADESKL---PLQLAIVGRPNVGKSTLLNTLLQEDRVLVGPEAGLTRDAIRTQFE 281
Query: 345 VNGIPITLLDTAG 357
G I L+DTAG
Sbjct: 282 FQGRTIYLVDTAG 294
>Medtr8g077125.1 | GTP-binding protein Era protein | HC |
chr8:32768242-32763709 | 20130731
Length = 473
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 18/172 (10%)
Query: 303 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVNGIPITLLDTAGI-RDT 361
+A++G+PNVGKS+L N + +IVT+ TTR + S + + L DT G+ ++
Sbjct: 121 VALLGKPNVGKSTLANQMVGQKLSIVTDKPQTTRHRVLCICSGSDYQMVLYDTPGVLQEQ 180
Query: 362 DDIVEKIGVERSEAVARGADLIIMTVSAVEGWTAEDTKLLERIQSTKESTGSSTPAILVV 421
++ + ++ + AD +++ V A + D L E I KE P +L++
Sbjct: 181 RHKLDSMMMQNVRSATVNADCVLVLVDACKAPEKIDEVLEEAIGGHKE----KPPTLLIM 236
Query: 422 NKIDC-KP---CAETEWDKGCHGHNFFS---KSVFTCAVTGQGLQDLESTVL 466
NK D KP + EW + F+ + + A G G++D+++ +L
Sbjct: 237 NKKDLIKPGEVAKKLEW------YTKFTDVDEVIPVSAKYGHGVEDVKNWIL 282