Miyakogusa Predicted Gene

Lj0g3v0351909.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0351909.1 tr|I7KMR5|I7KMR5_MARPO NDH subunit PnsB4
OS=Marchantia polymorpha GN=pnsb4 PE=4 SV=1,48.28,6e-18,seg,NULL;
coiled-coil,NULL,CUFF.24202.1
         (186 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g435320.1 | NDH-dependent flow 6 protein | HC | chr3:11533...   262   1e-70

>Medtr3g435320.1 | NDH-dependent flow 6 protein | HC |
           chr3:11533812-11536161 | 20130731
          Length = 182

 Score =  262 bits (670), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/173 (73%), Positives = 137/173 (79%), Gaps = 5/173 (2%)

Query: 1   MAEAIMGFTVFKSHIHCSCLQTKRFDVNPSSRLPKLHSNSTLFHRSWQVFESKCKRASLC 60
           MAEAI+GFTVF S+IH SCLQTKRF     SRLP+  SNSTLFHRS QV + K KRAS+C
Sbjct: 1   MAEAIIGFTVFNSYIHSSCLQTKRF-----SRLPRHPSNSTLFHRSLQVLDGKIKRASMC 55

Query: 61  KVNALPDWPLMAILVEQMEGQRDMITEKTIWHLSDGQIKNVYSWYIMFTVWGCLVFGSMK 120
           KVN LPD PLMAILVEQ+EGQRD+ITEKTIWHLSD QIKNVY+WYIMFTVWG L FGSMK
Sbjct: 56  KVNGLPDIPLMAILVEQLEGQRDLITEKTIWHLSDQQIKNVYAWYIMFTVWGVLFFGSMK 115

Query: 121 DPYYDSETYRGDGGDGTGNWIYEKQEIMXXXXXXXXXXXXXXXXXXQKVGGLK 173
           DPYYDSETYRGDGGDGTGNWIYEKQE+M                  QKVGGL+
Sbjct: 116 DPYYDSETYRGDGGDGTGNWIYEKQEVMEAEAREALWREELIEEIEQKVGGLR 168