Miyakogusa Predicted Gene

Lj0g3v0351859.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0351859.1 Non Characterized Hit- tr|B9S7A9|B9S7A9_RICCO
Nucleic acid binding protein, putative OS=Ricinus
comm,48.45,0,zf-C2H2_4,NULL; zf-C2H2_jaz,Zinc finger, double-stranded
RNA binding; C2H2 and C2HC zinc fingers,NUL,CUFF.24188.1
         (460 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g112270.2 | C2H2 zinc finger protein, putative | HC | chr1...   299   4e-81
Medtr1g112270.1 | C2H2 zinc finger protein, putative | HC | chr1...   299   4e-81
Medtr1g094115.2 | C2H2 zinc finger protein, putative | HC | chr1...   260   2e-69
Medtr1g094115.1 | C2H2 zinc finger protein, putative | HC | chr1...   251   9e-67
Medtr8g017210.1 | C2H2-like zinc finger protein, putative | HC |...   249   3e-66
Medtr2g099990.1 | C2H2-type zinc finger protein | HC | chr2:4289...   248   1e-65
Medtr2g099990.2 | C2H2-type zinc finger protein | HC | chr2:4289...   247   2e-65
Medtr4g059870.1 | C2H2 and C2HC zinc finger protein, putative | ...   244   2e-64
Medtr1g016010.1 | C2H2-type zinc finger protein | HC | chr1:4158...   243   4e-64
Medtr2g093960.1 | C2H2-type zinc finger protein | LC | chr2:4003...   234   2e-61
Medtr2g090745.1 | C2H2-like zinc finger protein, putative | HC |...   234   2e-61
Medtr2g017720.1 | F-box associated protein | LC | chr2:5437660-5...   146   4e-35
Medtr3g102000.1 | hypothetical protein | LC | chr3:46988766-4698...   112   6e-25
Medtr1g093095.1 | C2H2-type zinc finger protein | HC | chr1:4193...    72   9e-13
Medtr5g030560.1 | C2H2-like zinc finger protein, putative | HC |...    65   2e-10

>Medtr1g112270.2 | C2H2 zinc finger protein, putative | HC |
           chr1:50790900-50782752 | 20130731
          Length = 571

 Score =  299 bits (766), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 143/209 (68%), Positives = 166/209 (79%), Gaps = 5/209 (2%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKNSKDQAKRKVYLCPEPTCVHHDP 60
           MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQK +K+  KRKVYLCPEPTCVHHDP
Sbjct: 68  MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKE-PKRKVYLCPEPTCVHHDP 126

Query: 61  SRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKTCGTKEYRCDCGTLFSR 120
           SRALGDLTGIKKH+SRKHG            YAVQSDWKAHSKTCGT+EYRCDCGTLFSR
Sbjct: 127 SRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSR 186

Query: 121 RDSFITHRAFCDAPAQENNTSQPPNNMSSAISSQLYGSSSNNNHMSLALSQMC---PQIH 177
           RDSFITHRAFCDA AQE    QPP +++ AI S LYGSSSNNN M L+++Q+    P + 
Sbjct: 187 RDSFITHRAFCDALAQE-GPRQPPISLTGAIGSHLYGSSSNNNTMGLSIAQVAAQMPNMQ 245

Query: 178 HQTNNNNQSASDLLHFGGANIAKTEESNH 206
            Q ++++ SA+++L  G A   ++ + +H
Sbjct: 246 QQDHHSSNSATEILRLGAAAANRSGQFDH 274


>Medtr1g112270.1 | C2H2 zinc finger protein, putative | HC |
           chr1:50789869-50782797 | 20130731
          Length = 582

 Score =  299 bits (766), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 143/209 (68%), Positives = 166/209 (79%), Gaps = 5/209 (2%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKNSKDQAKRKVYLCPEPTCVHHDP 60
           MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQK +K+  KRKVYLCPEPTCVHHDP
Sbjct: 79  MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKE-PKRKVYLCPEPTCVHHDP 137

Query: 61  SRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKTCGTKEYRCDCGTLFSR 120
           SRALGDLTGIKKH+SRKHG            YAVQSDWKAHSKTCGT+EYRCDCGTLFSR
Sbjct: 138 SRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSR 197

Query: 121 RDSFITHRAFCDAPAQENNTSQPPNNMSSAISSQLYGSSSNNNHMSLALSQMC---PQIH 177
           RDSFITHRAFCDA AQE    QPP +++ AI S LYGSSSNNN M L+++Q+    P + 
Sbjct: 198 RDSFITHRAFCDALAQE-GPRQPPISLTGAIGSHLYGSSSNNNTMGLSIAQVAAQMPNMQ 256

Query: 178 HQTNNNNQSASDLLHFGGANIAKTEESNH 206
            Q ++++ SA+++L  G A   ++ + +H
Sbjct: 257 QQDHHSSNSATEILRLGAAAANRSGQFDH 285


>Medtr1g094115.2 | C2H2 zinc finger protein, putative | HC |
           chr1:42286106-42289867 | 20130731
          Length = 539

 Score =  260 bits (665), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 136/201 (67%), Positives = 149/201 (74%), Gaps = 16/201 (7%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKNSKDQAKRKVYLCPEPTCVHHDP 60
           MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQK++K+  +RKVYLCPEPTCVHHDP
Sbjct: 71  MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKE-PRRKVYLCPEPTCVHHDP 129

Query: 61  SRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKTCGTKEYRCDCGTLFSR 120
           SRALGDLTGIKKHFSRKHG            YAVQSDWKAHSKTCGT+EYRCDCGTLFSR
Sbjct: 130 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSR 189

Query: 121 RDSFITHRAFCDAPAQENNTSQPPNNMSSAISSQLYGSSSNNNHMSLA-----LSQMCPQ 175
           RDSFITHRAFCDA AQE   S   ++     + QLY +   N+H+SL      L     Q
Sbjct: 190 RDSFITHRAFCDALAQE---SVLRHHNPFGSTHQLYAT---NHHISLGQISHQLQNHQNQ 243

Query: 176 IHHQTNNNNQSASDLLHFGGA 196
           I   T+NNN    +LL  G A
Sbjct: 244 ITSSTSNNN----NLLRLGSA 260


>Medtr1g094115.1 | C2H2 zinc finger protein, putative | HC |
           chr1:42286195-42289752 | 20130731
          Length = 522

 Score =  251 bits (642), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 131/197 (66%), Positives = 145/197 (73%), Gaps = 16/197 (8%)

Query: 5   RFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKNSKDQAKRKVYLCPEPTCVHHDPSRAL 64
           +FICEVCNKGFQREQNLQLHRRGHNLPWKLKQK++K+  +RKVYLCPEPTCVHHDPSRAL
Sbjct: 58  KFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKE-PRRKVYLCPEPTCVHHDPSRAL 116

Query: 65  GDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKTCGTKEYRCDCGTLFSRRDSF 124
           GDLTGIKKHFSRKHG            YAVQSDWKAHSKTCGT+EYRCDCGTLFSRRDSF
Sbjct: 117 GDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSF 176

Query: 125 ITHRAFCDAPAQENNTSQPPNNMSSAISSQLYGSSSNNNHMSLA-----LSQMCPQIHHQ 179
           ITHRAFCDA AQE   S   ++     + QLY +   N+H+SL      L     QI   
Sbjct: 177 ITHRAFCDALAQE---SVLRHHNPFGSTHQLYAT---NHHISLGQISHQLQNHQNQITSS 230

Query: 180 TNNNNQSASDLLHFGGA 196
           T+NNN    +LL  G A
Sbjct: 231 TSNNN----NLLRLGSA 243


>Medtr8g017210.1 | C2H2-like zinc finger protein, putative | HC |
           chr8:5790010-5786899 | 20130731
          Length = 517

 Score =  249 bits (637), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 112/147 (76%), Positives = 124/147 (84%), Gaps = 1/147 (0%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKNSKDQAKRKVYLCPEPTCVHHDP 60
           +A NRFICE+CNKGFQR+QNLQLHRRGHNLPWKLKQ+ SK+  ++KVY+CPEPTCVHHDP
Sbjct: 86  LAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKE-IRKKVYVCPEPTCVHHDP 144

Query: 61  SRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKTCGTKEYRCDCGTLFSR 120
           SRALGDLTGIKKHFSRKHG            YAVQSDWKAHSKTCGT+EYRCDCGTLFSR
Sbjct: 145 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSR 204

Query: 121 RDSFITHRAFCDAPAQENNTSQPPNNM 147
           RDSFITHRAFCDA A+E+  +   N M
Sbjct: 205 RDSFITHRAFCDALAEESARAMTNNAM 231


>Medtr2g099990.1 | C2H2-type zinc finger protein | HC |
           chr2:42897047-42899888 | 20130731
          Length = 468

 Score =  248 bits (633), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 110/144 (76%), Positives = 124/144 (86%), Gaps = 1/144 (0%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKNSKDQAKRKVYLCPEPTCVHHDP 60
           MATNRFICE+CNKGFQR+QNLQLH+RGHNLPWKLKQ+ S ++ ++KVY+CPEPTCVHHDP
Sbjct: 70  MATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRTS-NEIRKKVYVCPEPTCVHHDP 128

Query: 61  SRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKTCGTKEYRCDCGTLFSR 120
           SRALGDLTGIKKHF RKHG            YAVQSDWKAHSKTCGT+EYRCDCGTLFSR
Sbjct: 129 SRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSR 188

Query: 121 RDSFITHRAFCDAPAQENNTSQPP 144
           RDSFITHRAFCDA A+E++ +  P
Sbjct: 189 RDSFITHRAFCDALAEESSRTVIP 212


>Medtr2g099990.2 | C2H2-type zinc finger protein | HC |
           chr2:42897047-42899888 | 20130731
          Length = 399

 Score =  247 bits (630), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 110/144 (76%), Positives = 124/144 (86%), Gaps = 1/144 (0%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKNSKDQAKRKVYLCPEPTCVHHDP 60
           MATNRFICE+CNKGFQR+QNLQLH+RGHNLPWKLKQ+ S ++ ++KVY+CPEPTCVHHDP
Sbjct: 1   MATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRTS-NEIRKKVYVCPEPTCVHHDP 59

Query: 61  SRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKTCGTKEYRCDCGTLFSR 120
           SRALGDLTGIKKHF RKHG            YAVQSDWKAHSKTCGT+EYRCDCGTLFSR
Sbjct: 60  SRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSR 119

Query: 121 RDSFITHRAFCDAPAQENNTSQPP 144
           RDSFITHRAFCDA A+E++ +  P
Sbjct: 120 RDSFITHRAFCDALAEESSRTVIP 143


>Medtr4g059870.1 | C2H2 and C2HC zinc finger protein, putative | HC
           | chr4:22086566-22083892 | 20130731
          Length = 495

 Score =  244 bits (622), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 103/137 (75%), Positives = 119/137 (86%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKNSKDQAKRKVYLCPEPTCVHHDP 60
           MATNRF+CE+CNKGFQR+QNLQLHRRGHNLPWKLKQ+ +KDQ ++KVY+CPE TCVHH+P
Sbjct: 62  MATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRANKDQIRKKVYVCPEKTCVHHEP 121

Query: 61  SRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKTCGTKEYRCDCGTLFSR 120
           SRALGDLTGIKKH+SRKHG            YAVQSDWKAHSK CGT+EY+CDCGT+FSR
Sbjct: 122 SRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSR 181

Query: 121 RDSFITHRAFCDAPAQE 137
           +DSFITHRAFCDA  ++
Sbjct: 182 KDSFITHRAFCDALTEQ 198


>Medtr1g016010.1 | C2H2-type zinc finger protein | HC |
           chr1:4158857-4161721 | 20130731
          Length = 452

 Score =  243 bits (619), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 107/150 (71%), Positives = 123/150 (82%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKNSKDQAKRKVYLCPEPTCVHHDP 60
           +ATNRFICE+CNKGFQR+QNLQLH+RGHNLPWKLK++N  +  ++KVY+CPEPTCVHHDP
Sbjct: 65  LATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKKRNVNEIIRKKVYVCPEPTCVHHDP 124

Query: 61  SRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKTCGTKEYRCDCGTLFSR 120
           SRALGDLTGIKKHF RKHG            YAVQSDWKAHSK CGTKEY+CDCGTLFSR
Sbjct: 125 SRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTKEYKCDCGTLFSR 184

Query: 121 RDSFITHRAFCDAPAQENNTSQPPNNMSSA 150
           RDSFITHRAFCD  +QE+ +    N + S+
Sbjct: 185 RDSFITHRAFCDVLSQESASISAVNPLFSS 214


>Medtr2g093960.1 | C2H2-type zinc finger protein | LC |
           chr2:40039886-40042385 | 20130731
          Length = 414

 Score =  234 bits (596), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 101/136 (74%), Positives = 115/136 (84%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKNSKDQAKRKVYLCPEPTCVHHDP 60
           M +NRFICEVCNKGF+R+QNLQLHRRGHNLPWKLKQ+N  +  ++KVY+CPE +CVHHDP
Sbjct: 56  MTSNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQRNKLEVIRKKVYVCPEKSCVHHDP 115

Query: 61  SRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKTCGTKEYRCDCGTLFSR 120
           SRALGDLTGIKKHFSRKHG            YAVQSDWKAHSK CGTKEYRCDCGTLFSR
Sbjct: 116 SRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSR 175

Query: 121 RDSFITHRAFCDAPAQ 136
           +DSF+THRAFC++  +
Sbjct: 176 KDSFLTHRAFCESLVE 191


>Medtr2g090745.1 | C2H2-like zinc finger protein, putative | HC |
           chr2:38896799-38894235 | 20130731
          Length = 429

 Score =  234 bits (596), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/162 (67%), Positives = 125/162 (77%), Gaps = 5/162 (3%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKNSKDQAKRKVYLCPEPTCVHHDP 60
           MATNRF+CE+C K FQR+QNLQLHRRGHNLPWKLKQ+ SK+  KR VY+CPE TCVH+ P
Sbjct: 31  MATNRFVCEICLKDFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKR-VYVCPEKTCVHNHP 89

Query: 61  SRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKTCGTKEYRCDCGTLFSR 120
           SRALGDLTGIKKHF RKHG            YAVQSDWKAHSKTCGT+EY+CDCGT+FSR
Sbjct: 90  SRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQSDWKAHSKTCGTREYKCDCGTIFSR 149

Query: 121 RDSFITHRAFCDAPAQENNTSQPPNNMSSAISSQLYGSSSNN 162
           RDSF+THRAFCDA A+E        N S+ I++ L G   NN
Sbjct: 150 RDSFVTHRAFCDALAEET----ARINGSTNINNSLLGMGGNN 187


>Medtr2g017720.1 | F-box associated protein | LC |
           chr2:5437660-5435484 | 20130731
          Length = 432

 Score =  146 bits (369), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 79/102 (77%), Gaps = 6/102 (5%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKNSKDQAKRKVYLCPEPTCVHHDP 60
           MATNRF+CE+C K FQR+QNLQLHRRGHNLPWKLKQ+ SK + +++VY+CPE   VH+ P
Sbjct: 337 MATNRFVCEICLKDFQRDQNLQLHRRGHNLPWKLKQRTSK-KIRKRVYVCPEKIRVHNHP 395

Query: 61  SRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHS 102
           SRALGDLTGIKKHF RKHG            Y VQSDWKAHS
Sbjct: 396 SRALGDLTGIKKHFCRKHG-----EKKCSKFYVVQSDWKAHS 432


>Medtr3g102000.1 | hypothetical protein | LC |
           chr3:46988766-46986877 | 20130731
          Length = 226

 Score =  112 bits (281), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 69/100 (69%), Gaps = 8/100 (8%)

Query: 4   NRFICEVCN----KGFQREQNLQLHRRGHNLPWKLKQKNSKDQAKRKVYLCPEPTCVHHD 59
           NR++ ++      + FQR QNLQLHRRG+NLPWKLKQ+ SK+  KR VY+CPE T VH+ 
Sbjct: 36  NRYVIKLYAHAHPEDFQRNQNLQLHRRGYNLPWKLKQRTSKEIRKR-VYVCPEKTRVHNH 94

Query: 60  PSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWK 99
           PSRALGDLTGIKKHF R H             YAVQSDWK
Sbjct: 95  PSRALGDLTGIKKHFCRNHS---ENKWKCSKFYAVQSDWK 131


>Medtr1g093095.1 | C2H2-type zinc finger protein | HC |
           chr1:41939075-41940250 | 20130731
          Length = 294

 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 14/142 (9%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKL--------KQKNSKDQAKRKVYLCPE 52
           +   +F C VCNK F R  N+Q+H  GH   ++         K  +S    K   Y C E
Sbjct: 110 VGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRKGPESLKGPKPASSSSMLKLPCYCCAE 169

Query: 53  PTC---VHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKTCGTKE 109
             C   +++  +R L D   ++ H+ RKHG            +AV+ DW+ H K CG K 
Sbjct: 170 -GCRNNINYPRARPLKDFRTLQTHYKRKHGGKSFECRKCRKTFAVRGDWRTHEKNCG-KL 227

Query: 110 YRCDCGTLFSRRDSFITH-RAF 130
           + C CG+ F  + S   H RAF
Sbjct: 228 WFCICGSDFKHKRSLKDHVRAF 249


>Medtr5g030560.1 | C2H2-like zinc finger protein, putative | HC |
          chr5:12937715-12939520 | 20130731
          Length = 81

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/31 (80%), Positives = 29/31 (93%)

Query: 1  MATNRFICEVCNKGFQREQNLQLHRRGHNLP 31
          MATNRF+CE+C K FQR+QNLQLHRRG+NLP
Sbjct: 30 MATNRFVCEICLKDFQRDQNLQLHRRGYNLP 60