Miyakogusa Predicted Gene

Lj0g3v0351649.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0351649.1 Non Characterized Hit- tr|D7KPV0|D7KPV0_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,52.94,9e-19,DUF2040,Domain of unknown function DUF2040; INNER
MEMBRANE PROTEIN,NULL; coiled-coil,NULL; seg,NULL,CUFF.24166.1
         (172 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g095010.1 | nuclear speckle splicing regulatory protein, p...   235   2e-62

>Medtr5g095010.1 | nuclear speckle splicing regulatory protein,
           putative | HC | chr5:41533898-41538027 | 20130731
          Length = 313

 Score =  235 bits (600), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 123/172 (71%), Positives = 139/172 (80%), Gaps = 2/172 (1%)

Query: 1   MKEKVAKPLIQDREERKPKYIQNLIKKAKEREQYREIVYEKKIAMERDKDDHLYADKDKY 60
           MKEKVA+PLIQDREERKPKYIQNLI+KAKEREQYREIVYEKKIA ER KDDHL+ADKDKY
Sbjct: 75  MKEKVARPLIQDREERKPKYIQNLIQKAKEREQYREIVYEKKIAKERSKDDHLFADKDKY 134

Query: 61  VTEAYRRKLAXXXXXXXXXXXXXXXXXXDDVTKKKDFLLDFYSNLDKNVAYGAKDAQGRK 120
           VTEAYRRKLA                  +DVTKKKDFLLDFY+NLDKNVA+GAKDAQGRK
Sbjct: 135 VTEAYRRKLAEREKQMELERIRELQEEREDVTKKKDFLLDFYTNLDKNVAFGAKDAQGRK 194

Query: 121 RDNQAEHRVPETHEGVNPDASDRHHQHGDASDEKQHSLGNSSPPVESSKEKI 172
           RDN+AE+RV E  EG++PDAS+  HQ G+ +DE+QHSL  +S P ES  +KI
Sbjct: 195 RDNRAENRVLEKREGMSPDASN-QHQDGN-TDEEQHSLAKTSSPEESPGKKI 244