Miyakogusa Predicted Gene

Lj0g3v0349819.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0349819.1 Non Characterized Hit- tr|A5B4E4|A5B4E4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,49.58,7e-19,THIOREDOXIN-LIKE PROTEN 4A, 4B,NULL; THIOREDOXIN-LIKE
PROTEN 4A, 4B,mRNA splicing factor, thioredoxi,CUFF.24022.1
         (98 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g080840.1 | thioredoxin-like protein 4B | HC | chr1:359615...   184   1e-47
Medtr3g108770.1 | mRNA splicing factor, thioredoxin-like U5 snRN...    67   3e-12
Medtr3g108770.2 | mRNA splicing factor, thioredoxin-like U5 snRN...    67   3e-12
Medtr1g045900.1 | mRNA splicing factor, thioredoxin-like U5 snRN...    66   8e-12
Medtr4g075190.1 | mRNA splicing factor, thioredoxin-like U5 snRN...    62   1e-10

>Medtr1g080840.1 | thioredoxin-like protein 4B | HC |
          chr1:35961547-35964407 | 20130731
          Length = 162

 Score =  184 bits (468), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/97 (91%), Positives = 94/97 (96%)

Query: 1  MNYMLTTLSKKKEVDSIIRDTIDKVLVLRFGRASDPVCLQLDQILSKAARDVSKFATVAL 60
          M+YMLTTLS+K+EVDSIIRDTIDKVLVLRFGR SDP CL LDQILSKAAR+VSKFATVAL
Sbjct: 1  MSYMLTTLSQKREVDSIIRDTIDKVLVLRFGRESDPNCLHLDQILSKAAREVSKFATVAL 60

Query: 61 VDVDSPDIQVYVKYFDITLIPSTMFFFNAHHMKMDSG 97
          VDVDSPDIQVYVKYFDITLIPST+FFFNAHHMKMDSG
Sbjct: 61 VDVDSPDIQVYVKYFDITLIPSTLFFFNAHHMKMDSG 97


>Medtr3g108770.1 | mRNA splicing factor, thioredoxin-like U5 snRNP
          protein | HC | chr3:50238238-50236330 | 20130731
          Length = 142

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 6/99 (6%)

Query: 1  MNYMLTTLSKKKEVDSIIRDTIDKVLVLRFGRASDPVCLQLDQILSKAARDVSKFATVAL 60
          M+YML  L     VD  I    ++++V+RFG   D  C+Q+D++LS  A  +  FA + L
Sbjct: 1  MSYMLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYL 60

Query: 61 VDV-DSPDIQVYVKYFDITLIPST-MFFFNAHHMKMDSG 97
          VD+ + PD     + +D    PST MFFF   H+ +D G
Sbjct: 61 VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLG 95


>Medtr3g108770.2 | mRNA splicing factor, thioredoxin-like U5 snRNP
          protein | HC | chr3:50238434-50236330 | 20130731
          Length = 142

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 6/99 (6%)

Query: 1  MNYMLTTLSKKKEVDSIIRDTIDKVLVLRFGRASDPVCLQLDQILSKAARDVSKFATVAL 60
          M+YML  L     VD  I    ++++V+RFG   D  C+Q+D++LS  A  +  FA + L
Sbjct: 1  MSYMLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYL 60

Query: 61 VDV-DSPDIQVYVKYFDITLIPST-MFFFNAHHMKMDSG 97
          VD+ + PD     + +D    PST MFFF   H+ +D G
Sbjct: 61 VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLG 95


>Medtr1g045900.1 | mRNA splicing factor, thioredoxin-like U5 snRNP
          protein | HC | chr1:17280905-17278305 | 20130731
          Length = 142

 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 6/99 (6%)

Query: 1  MNYMLTTLSKKKEVDSIIRDTIDKVLVLRFGRASDPVCLQLDQILSKAARDVSKFATVAL 60
          M+Y+L  L     VD  I    ++++V+RFG   D  C+Q+D++LS  A  +  FA + L
Sbjct: 1  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYL 60

Query: 61 VDV-DSPDIQVYVKYFDITLIPST-MFFFNAHHMKMDSG 97
          VD+ + PD     + +D    PST MFFF   H+ +D G
Sbjct: 61 VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLG 95


>Medtr4g075190.1 | mRNA splicing factor, thioredoxin-like U5 snRNP
          protein | HC | chr4:28719124-28719705 | 20130731
          Length = 142

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 6/99 (6%)

Query: 1  MNYMLTTLSKKKEVDSIIRDTIDKVLVLRFGRASDPVCLQLDQILSKAARDVSKFATVAL 60
          M+Y+L  L     VD  I    ++++V+RFG   D  C+Q+D++L+  A  +  FA + L
Sbjct: 1  MSYLLPHLHSGWAVDQAILCEEERLVVIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61 VDV-DSPDIQVYVKYFDITLIPST-MFFFNAHHMKMDSG 97
          VD+ + PD     + +D    P T MFFF   H+ +D G
Sbjct: 61 VDITEVPDFNTMYELYD----PCTVMFFFRNKHIMIDLG 95