Miyakogusa Predicted Gene
- Lj0g3v0348579.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0348579.1 CUFF.23932.1
(96 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g099753.1 | PPR containing plant-like protein | HC | chr3:... 147 2e-36
Medtr3g099753.2 | PPR containing plant-like protein | HC | chr3:... 147 2e-36
Medtr2g013450.1 | PPR containing plant protein | HC | chr2:36232... 57 5e-09
Medtr8g059115.1 | PPR containing plant-like protein | HC | chr8:... 55 1e-08
Medtr2g047855.1 | PPR containing plant protein | HC | chr2:20930... 51 2e-07
Medtr2g090290.1 | PPR containing plant protein | HC | chr2:38388... 50 4e-07
Medtr1g072300.2 | PPR containing plant protein | HC | chr1:32088... 50 7e-07
Medtr1g072300.1 | PPR containing plant protein | HC | chr1:32088... 50 7e-07
Medtr1g072300.3 | PPR containing plant protein | HC | chr1:32088... 50 7e-07
Medtr8g465890.1 | PPR containing plant protein | HC | chr8:23498... 49 1e-06
Medtr8g465890.2 | PPR containing plant protein | HC | chr8:23498... 49 1e-06
>Medtr3g099753.1 | PPR containing plant-like protein | HC |
chr3:45738160-45740398 | 20130731
Length = 527
Score = 147 bits (372), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/92 (79%), Positives = 81/92 (88%)
Query: 5 STLANVDMKAGQLDKTILALENAEKKLSTFGCLGYFFLITIYASLKEKEGVLRLWEASKA 64
+TLANV MKAGQ +K IL L+NAE+KLST LGYFF+IT+YASLK+KEGVLRLWEASKA
Sbjct: 274 ATLANVYMKAGQSEKAILVLKNAEEKLSTCNRLGYFFIITLYASLKQKEGVLRLWEASKA 333
Query: 65 VGGRISCANYICMLTCLVKLGDIVQAKTIFME 96
VGGRISCANYIC+LT LVKLGDI QAK IF E
Sbjct: 334 VGGRISCANYICILTSLVKLGDIAQAKRIFRE 365
>Medtr3g099753.2 | PPR containing plant-like protein | HC |
chr3:45738160-45740519 | 20130731
Length = 511
Score = 147 bits (371), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/92 (79%), Positives = 81/92 (88%)
Query: 5 STLANVDMKAGQLDKTILALENAEKKLSTFGCLGYFFLITIYASLKEKEGVLRLWEASKA 64
+TLANV MKAGQ +K IL L+NAE+KLST LGYFF+IT+YASLK+KEGVLRLWEASKA
Sbjct: 250 ATLANVYMKAGQSEKAILVLKNAEEKLSTCNRLGYFFIITLYASLKQKEGVLRLWEASKA 309
Query: 65 VGGRISCANYICMLTCLVKLGDIVQAKTIFME 96
VGGRISCANYIC+LT LVKLGDI QAK IF E
Sbjct: 310 VGGRISCANYICILTSLVKLGDIAQAKRIFRE 341
>Medtr2g013450.1 | PPR containing plant protein | HC |
chr2:3623288-3620902 | 20130731
Length = 495
Score = 56.6 bits (135), Expect = 5e-09, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 49/92 (53%)
Query: 5 STLANVDMKAGQLDKTILALENAEKKLSTFGCLGYFFLITIYASLKEKEGVLRLWEASKA 64
S +AN +KA + I AL EK+L GY LI++YA L +K VLRLW+ K+
Sbjct: 239 SVVANFYIKAELSSEAIDALRKCEKRLDDKDGEGYNHLISLYARLGKKNEVLRLWDMEKS 298
Query: 65 VGGRISCANYICMLTCLVKLGDIVQAKTIFME 96
R ++I ML LVKL + +A I E
Sbjct: 299 ACKRCLNRDFITMLESLVKLEEFDEADKILKE 330
>Medtr8g059115.1 | PPR containing plant-like protein | HC |
chr8:20661178-20662671 | 20130731
Length = 409
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%)
Query: 7 LANVDMKAGQLDKTILALENAEKKLSTFGCLGYFFLITIYASLKEKEGVLRLWEASKAVG 66
+AN +KA +K ++ L+ E K+ + Y +LI+ YASL K+ ++RLW+ K
Sbjct: 155 VANYFIKADLKEKALVYLKKCEDKVDKRDTIAYNYLISHYASLGNKKAMMRLWKLQKENC 214
Query: 67 GRISCANYICMLTCLVKLGDIVQAKTIFME 96
+ YI ML LVKLGD +A+ + E
Sbjct: 215 KKQLNREYITMLGSLVKLGDFDEAEKLLAE 244
>Medtr2g047855.1 | PPR containing plant protein | HC |
chr2:20930476-20928117 | 20130731
Length = 494
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 5 STLANVDMKAGQLDKTILALENAEKKL-STFGCLGYFFLITIYASLKEKEGVLRLWEASK 63
S +A+ +KAGQ DK+++ L+ +E+ + Y L+T YA+ +K+ V R+W K
Sbjct: 241 SAVADGYIKAGQFDKSLIVLKKSEQLIRGKSKRAAYQSLLTKYAATGKKDDVYRIWNICK 300
Query: 64 AVGGRISCANYICMLTCLVKLGDIVQAKTIFME 96
++ G + + YI ML L L DI A+TI E
Sbjct: 301 SLNGSQN-STYISMLMSLSNLNDIDGAETILEE 332
>Medtr2g090290.1 | PPR containing plant protein | HC |
chr2:38388050-38391519 | 20130731
Length = 484
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 5 STLANVDMKAGQLDKTILALENAEKKLSTFGC--------LGYFFLITIYASLKEKEGVL 56
ST AN MK G ++K L+ +E ++ L Y L T++A++ K+ V
Sbjct: 242 STAANAYMKVGNVEKGSAMLKKSENLVNAQTSRIPYESRRLAYESLQTMHAAIGNKDAVY 301
Query: 57 RLWEASKAVGGRISCANYICMLTCLVKLGDIVQAKTIFME 96
RLW K + ++ ++Y+CML+ LVKL DI A+ I E
Sbjct: 302 RLWNRCKNLRNTLN-SSYLCMLSSLVKLDDIEGAEKILQE 340
>Medtr1g072300.2 | PPR containing plant protein | HC |
chr1:32088105-32090245 | 20130731
Length = 512
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 5 STLANVDMKAGQLD----KTILALENAEKKLSTFGCLGYFFLITIYASLKEKEGVLRLWE 60
STL N+ ++ +D K L+ EK+ S + Y L++++A++ + V R+W
Sbjct: 246 STLTNLYIRNASVDDCLEKAASTLKEMEKRTSRETRVAYSSLLSLHANMGNVDEVNRIWG 305
Query: 61 ASKAVGGRISCANYICMLTCLVKLGDIVQAKTIFME 96
KA ++S Y+CM++ LVKLGD + ++ E
Sbjct: 306 KMKACFCKMSDDEYVCMISSLVKLGDFAGVENLYKE 341
>Medtr1g072300.1 | PPR containing plant protein | HC |
chr1:32088105-32090245 | 20130731
Length = 512
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 5 STLANVDMKAGQLD----KTILALENAEKKLSTFGCLGYFFLITIYASLKEKEGVLRLWE 60
STL N+ ++ +D K L+ EK+ S + Y L++++A++ + V R+W
Sbjct: 246 STLTNLYIRNASVDDCLEKAASTLKEMEKRTSRETRVAYSSLLSLHANMGNVDEVNRIWG 305
Query: 61 ASKAVGGRISCANYICMLTCLVKLGDIVQAKTIFME 96
KA ++S Y+CM++ LVKLGD + ++ E
Sbjct: 306 KMKACFCKMSDDEYVCMISSLVKLGDFAGVENLYKE 341
>Medtr1g072300.3 | PPR containing plant protein | HC |
chr1:32088105-32090245 | 20130731
Length = 512
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 5 STLANVDMKAGQLD----KTILALENAEKKLSTFGCLGYFFLITIYASLKEKEGVLRLWE 60
STL N+ ++ +D K L+ EK+ S + Y L++++A++ + V R+W
Sbjct: 246 STLTNLYIRNASVDDCLEKAASTLKEMEKRTSRETRVAYSSLLSLHANMGNVDEVNRIWG 305
Query: 61 ASKAVGGRISCANYICMLTCLVKLGDIVQAKTIFME 96
KA ++S Y+CM++ LVKLGD + ++ E
Sbjct: 306 KMKACFCKMSDDEYVCMISSLVKLGDFAGVENLYKE 341
>Medtr8g465890.1 | PPR containing plant protein | HC |
chr8:23498318-23503190 | 20130731
Length = 492
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 5 STLANVDMKAGQLDKTILALENAEKKLSTFGCLG-YFFLITIYASLKEKEGVLRLWEASK 63
S +A+ +K GQ DK ++ L+ +E+ + Y L+T YA++ +K+ V R+W K
Sbjct: 240 SVVADGYIKVGQFDKALIVLKKSEQLIRGKSKRAVYQSLLTKYAAIGKKDDVYRIWNICK 299
Query: 64 AVGGRISCANYICMLTCLVKLGDIVQAKTIFME 96
++ G + YI ML L L DI A+TI E
Sbjct: 300 SLNGS-HHSTYISMLMSLSNLNDIDGAETILEE 331
>Medtr8g465890.2 | PPR containing plant protein | HC |
chr8:23498212-23503209 | 20130731
Length = 492
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 5 STLANVDMKAGQLDKTILALENAEKKLSTFGCLG-YFFLITIYASLKEKEGVLRLWEASK 63
S +A+ +K GQ DK ++ L+ +E+ + Y L+T YA++ +K+ V R+W K
Sbjct: 240 SVVADGYIKVGQFDKALIVLKKSEQLIRGKSKRAVYQSLLTKYAAIGKKDDVYRIWNICK 299
Query: 64 AVGGRISCANYICMLTCLVKLGDIVQAKTIFME 96
++ G + YI ML L L DI A+TI E
Sbjct: 300 SLNGS-HHSTYISMLMSLSNLNDIDGAETILEE 331