Miyakogusa Predicted Gene

Lj0g3v0348479.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0348479.1 Non Characterized Hit- tr|C5YV75|C5YV75_SORBI
Putative uncharacterized protein Sb09g008006
(Fragment,73.33,1e-17,seg,NULL,CUFF.24084.1
         (125 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g101140.1 | NADH dehydrogenase [ubiquinone] 1 beta subcomp...   187   2e-48
Medtr4g101140.2 | NADH dehydrogenase [ubiquinone] 1 beta subcomp...   164   2e-41

>Medtr4g101140.1 | NADH dehydrogenase [ubiquinone] 1 beta subcomplex
           subunit 8 | HC | chr4:41768568-41773066 | 20130731
          Length = 125

 Score =  187 bits (474), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/125 (72%), Positives = 97/125 (77%)

Query: 1   MAGRLTNSASRILGGNGXXXXXXXXXXXXXXGIGPPVGKHIVPDKPLPANDELVWDNGTS 60
           MAGRLTN AS+ILGGNG              G+G PVGKH VP+KPLP N+EL WDNGT 
Sbjct: 1   MAGRLTNVASQILGGNGVVHRSVASSLRLRSGMGLPVGKHYVPNKPLPMNEELTWDNGTP 60

Query: 61  LPEPCIDRIADTVGKYEALAWLCGGLSCFASLGLLAVWNDKASKIPFAPKVYPYDNLAAR 120
            PEPCIDRIADTVGKYEALAWLCGGLSCFA LGLLAVWNDKASK PFAPKVYPYDNL   
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLSCFAGLGLLAVWNDKASKTPFAPKVYPYDNLRVE 120

Query: 121 ICNQP 125
           +  +P
Sbjct: 121 LGGEP 125


>Medtr4g101140.2 | NADH dehydrogenase [ubiquinone] 1 beta subcomplex
           subunit 8 | HC | chr4:41768568-41770219 | 20130731
          Length = 117

 Score =  164 bits (414), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/108 (74%), Positives = 84/108 (77%)

Query: 1   MAGRLTNSASRILGGNGXXXXXXXXXXXXXXGIGPPVGKHIVPDKPLPANDELVWDNGTS 60
           MAGRLTN AS+ILGGNG              G+G PVGKH VP+KPLP N+EL WDNGT 
Sbjct: 1   MAGRLTNVASQILGGNGVVHRSVASSLRLRSGMGLPVGKHYVPNKPLPMNEELTWDNGTP 60

Query: 61  LPEPCIDRIADTVGKYEALAWLCGGLSCFASLGLLAVWNDKASKIPFA 108
            PEPCIDRIADTVGKYEALAWLCGGLSCFA LGLLAVWNDKASK PF 
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLSCFAGLGLLAVWNDKASKTPFV 108