Miyakogusa Predicted Gene

Lj0g3v0347359.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0347359.1 tr|B9GIS5|B9GIS5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_550441 PE=4
SV=1,53.85,0.0000000000002, ,CUFF.23843.1
         (420 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g079060.1 | embryo defective 2737 protein | HC | chr2:3311...   642   0.0  
Medtr2g079060.2 | embryo defective 2737 protein | HC | chr2:3311...   498   e-141

>Medtr2g079060.1 | embryo defective 2737 protein | HC |
           chr2:33115736-33107532 | 20130731
          Length = 421

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/412 (75%), Positives = 349/412 (84%), Gaps = 3/412 (0%)

Query: 10  VKRFVEVRYKVFSTRYGQNVIDILDFPIKLVLSPFTLAFDIAGSAPRGFGVPELISKLSA 69
           VK+F   R+K F+  YG+ V D+  FP K++ +P T+A DIAGSAPRGFGVPEL+SKLSA
Sbjct: 12  VKKFFRNRFKEFNNAYGETVSDVFAFPFKVLFTPLTVAIDIAGSAPRGFGVPELVSKLSA 71

Query: 70  ASVFAIATLGTYDIALELGKKVICQRNCRTCNGWQALRCTMCRGSGRVHYQVKSCTLKRG 129
           ASVFA+ATLGTYDIAL LG+KVICQR+C TCNGWQA+RCTMCRGSGRVHYQVK+C LK G
Sbjct: 72  ASVFAVATLGTYDIALNLGRKVICQRDCVTCNGWQAMRCTMCRGSGRVHYQVKNCHLKSG 131

Query: 130 EKATAESVADAIVDNRAELVHIPSS-LDFQKPLPLKDCPTCDGTGVMGCTECKHKLQVRI 188
           EKATAESVADAIV+N+AELVHIPSS  D Q PLP KDCP CDGTGVMGC ECK+KL  +I
Sbjct: 132 EKATAESVADAIVNNQAELVHIPSSSFDPQIPLPSKDCPICDGTGVMGCPECKNKLPFKI 191

Query: 189 SADDIMEPPWQAYNVLEKMDYPYEHIRHSMKDPGIAAFWLITLPQIMGGFTYDDDVKQNI 248
           SAD IMEP WQA NVLEKMDYPYEHIR SMKDP IA FWLI  PQIM GFTY D+ K+ I
Sbjct: 192 SADGIMEPHWQARNVLEKMDYPYEHIRDSMKDPDIAEFWLIAYPQIMYGFTYGDNAKKTI 251

Query: 249 WSQYKESMRYDQLRDVVAKRKPGWEYLQDALISIDPSRARDDPVIVKNVPYFKAKKALEA 308
            S+Y+ES R+DQLRD VA RKPGWE+L DALISIDP RARDDPVI KN+PY+KAKKALE 
Sbjct: 252 LSEYEES-RWDQLRDEVATRKPGWEFLNDALISIDPDRARDDPVIGKNIPYYKAKKALEE 310

Query: 309 EVMKLDPPPRPPTWGELDLPLSASSWSEQDLKDPDKFYEMTVLLNAQREISDKILDAQWE 368
           EVMKLDPPPRP  WGELDLPLS SSW E+DLK+P+K +EM VLLNAQREIS+ ILD QWE
Sbjct: 311 EVMKLDPPPRPSNWGELDLPLSPSSWDEEDLKNPEKLHEMNVLLNAQREISENILDVQWE 370

Query: 369 TKWRQEKLNKMVEEKLQPYIQNTDSAVLSETILLKPQNQDNKRPRRRRWFFF 420
           TKWRQEK+N+M+EEKLQPYIQN D+ VLSE ILLK Q Q+ K+ R+RRWF F
Sbjct: 371 TKWRQEKVNEMLEEKLQPYIQNIDNEVLSEPILLKSQKQE-KKHRQRRWFIF 421


>Medtr2g079060.2 | embryo defective 2737 protein | HC |
           chr2:33115699-33107532 | 20130731
          Length = 362

 Score =  498 bits (1282), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 239/315 (75%), Positives = 266/315 (84%), Gaps = 2/315 (0%)

Query: 10  VKRFVEVRYKVFSTRYGQNVIDILDFPIKLVLSPFTLAFDIAGSAPRGFGVPELISKLSA 69
           VK+F   R+K F+  YG+ V D+  FP K++ +P T+A DIAGSAPRGFGVPEL+SKLSA
Sbjct: 12  VKKFFRNRFKEFNNAYGETVSDVFAFPFKVLFTPLTVAIDIAGSAPRGFGVPELVSKLSA 71

Query: 70  ASVFAIATLGTYDIALELGKKVICQRNCRTCNGWQALRCTMCRGSGRVHYQVKSCTLKRG 129
           ASVFA+ATLGTYDIAL LG+KVICQR+C TCNGWQA+RCTMCRGSGRVHYQVK+C LK G
Sbjct: 72  ASVFAVATLGTYDIALNLGRKVICQRDCVTCNGWQAMRCTMCRGSGRVHYQVKNCHLKSG 131

Query: 130 EKATAESVADAIVDNRAELVHIP-SSLDFQKPLPLKDCPTCDGTGVMGCTECKHKLQVRI 188
           EKATAESVADAIV+N+AELVHIP SS D Q PLP KDCP CDGTGVMGC ECK+KL  +I
Sbjct: 132 EKATAESVADAIVNNQAELVHIPSSSFDPQIPLPSKDCPICDGTGVMGCPECKNKLPFKI 191

Query: 189 SADDIMEPPWQAYNVLEKMDYPYEHIRHSMKDPGIAAFWLITLPQIMGGFTYDDDVKQNI 248
           SAD IMEP WQA NVLEKMDYPYEHIR SMKDP IA FWLI  PQIM GFTY D+ K+ I
Sbjct: 192 SADGIMEPHWQARNVLEKMDYPYEHIRDSMKDPDIAEFWLIAYPQIMYGFTYGDNAKKTI 251

Query: 249 WSQYKESMRYDQLRDVVAKRKPGWEYLQDALISIDPSRARDDPVIVKNVPYFKAKKALEA 308
            S+Y+ES R+DQLRD VA RKPGWE+L DALISIDP RARDDPVI KN+PY+KAKKALE 
Sbjct: 252 LSEYEES-RWDQLRDEVATRKPGWEFLNDALISIDPDRARDDPVIGKNIPYYKAKKALEE 310

Query: 309 EVMKLDPPPRPPTWG 323
           EVMKLDPPPRP  WG
Sbjct: 311 EVMKLDPPPRPSNWG 325