Miyakogusa Predicted Gene

Lj0g3v0346729.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0346729.1 Non Characterized Hit- tr|I3T5L3|I3T5L3_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,76.21,0,seg,NULL; Tetraspannin,Tetraspanin/Peripherin; SUBFAMILY
NOT NAMED,NULL; TETRASPANIN,NULL,CUFF.23791.1
         (247 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g069185.1 | tetraspanin family protein | HC | chr1:2977881...   365   e-101
Medtr5g014080.2 | tobamovirus multiplication protein 2A | HC | c...   148   4e-36
Medtr5g014080.1 | tobamovirus multiplication protein 2A | HC | c...   148   4e-36
Medtr5g014080.3 | tobamovirus multiplication protein 2A | HC | c...   148   4e-36
Medtr5g014080.5 | tobamovirus multiplication protein 2A | HC | c...   148   4e-36
Medtr5g014080.4 | tobamovirus multiplication protein 2A | HC | c...   148   4e-36
Medtr4g098860.2 | tetraspanin family protein | HC | chr4:4078902...   128   6e-30
Medtr4g098860.1 | tetraspanin family protein | HC | chr4:4078881...   128   6e-30

>Medtr1g069185.1 | tetraspanin family protein | HC |
           chr1:29778816-29783451 | 20130731
          Length = 249

 Score =  365 bits (937), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/248 (71%), Positives = 199/248 (80%), Gaps = 2/248 (0%)

Query: 1   MRPNCCHVSLAFVLKFLNFLQAFVGVSILLYSVWMLNQWDHRVPQPPLPHISL--PRIVS 58
           MR +CCH SLAF+LKFLNFLQAFVG+SILLYS+WMLNQWDH  PQPPLPH+SL  PR  S
Sbjct: 1   MRLHCCHFSLAFLLKFLNFLQAFVGLSILLYSIWMLNQWDHFTPQPPLPHLSLSLPRSFS 60

Query: 59  AINVNSLNLPAPWFIYAFMGVGILMCCITFLGCIAAEMINGFCLCFYTLIITVLVLAEAA 118
               + +NLPAPWFIYAFM VGIL+CCI F GCIAAE+ING CLCFYT++ITVLVL EAA
Sbjct: 61  PQFTSDINLPAPWFIYAFMCVGILVCCIAFFGCIAAEIINGCCLCFYTVLITVLVLLEAA 120

Query: 119 LVGFIAIDHHWREDIPVDPTGQLESLQSFIEENQDICRWVGIXXXXXXXXXXXXXXXXRA 178
           LV FIAID  W+ED+PVDPTGQL S++SFIE+NQDI RWVGI                RA
Sbjct: 121 LVAFIAIDRQWQEDLPVDPTGQLASIRSFIEDNQDISRWVGIAVLVVQALSLLVALILRA 180

Query: 179 TISTRRADFDYEDEYDVRGRSWEPLLNPQSGQPSGSGKVDNRGNHSDIWSSRMREKYGLN 238
           T+STRRADFD E+EYDVRGRS EPLLN QSGQ SG  K D RGN SD+WSSRMREKYGLN
Sbjct: 181 TVSTRRADFDDEEEYDVRGRSREPLLNHQSGQTSGISKGDIRGNLSDVWSSRMREKYGLN 240

Query: 239 NGDKQSHQ 246
           NGDK S++
Sbjct: 241 NGDKHSYE 248


>Medtr5g014080.2 | tobamovirus multiplication protein 2A | HC |
           chr5:4658909-4665681 | 20130731
          Length = 289

 Score =  148 bits (374), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 134/261 (51%), Gaps = 26/261 (9%)

Query: 5   CCHVSLAFVLKFLNFLQAFVGVSILLYSVWMLNQW-----DHRVPQPPLPHIS------- 52
           CC      +LK LNF+    G++I+ Y +++L  +     D +    P P IS       
Sbjct: 3   CCRGFWECLLKLLNFILTVTGLAIVGYGIYLLVAFAKASDDDKPDISPTPDISPVSGDSA 62

Query: 53  -----LPRIVSAINVNSL--NLPAPWFIYAFMGVGILMCCITFLGCIAAEMINGFCLCFY 105
                 P +++    +++   LP  WFIY F+GVG ++  ++  GCI A   NG CL  Y
Sbjct: 63  LIQFGRPMLMAVSLSDNIFDKLPKAWFIYLFIGVGAVLFVVSCFGCIGATTRNGCCLICY 122

Query: 106 TLIITVLVLAEAALVGFIAIDHHWREDIPVDPTGQLESLQSFIEENQDICRWVGIXXXXX 165
           ++++ +L+L E     F+  D  W+E+IP D TG  + +  F+ EN DI RWV +     
Sbjct: 123 SILVALLILVELGCAAFLFFDKSWKEEIPTDKTGDFDMIYGFLRENWDIVRWVALGIVIF 182

Query: 166 XXXXXXXXXXXRATISTRRADFDYEDEY-DVRGRSWEPLL-NPQSGQPSG---SGKVDNR 220
                      RA    R AD+D +DE  + R +  +PLL N Q+G PSG   +G  D R
Sbjct: 183 EALLFLLALIVRAV--NRPADYDSDDELINPRQQVRQPLLNNRQAGPPSGLPVAGTTDQR 240

Query: 221 GNHSDIWSSRMREKYGLNNGD 241
            N +D WS+RMREKYGL+  +
Sbjct: 241 PNRNDAWSTRMREKYGLDTSE 261


>Medtr5g014080.1 | tobamovirus multiplication protein 2A | HC |
           chr5:4658815-4665681 | 20130731
          Length = 289

 Score =  148 bits (374), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 134/261 (51%), Gaps = 26/261 (9%)

Query: 5   CCHVSLAFVLKFLNFLQAFVGVSILLYSVWMLNQW-----DHRVPQPPLPHIS------- 52
           CC      +LK LNF+    G++I+ Y +++L  +     D +    P P IS       
Sbjct: 3   CCRGFWECLLKLLNFILTVTGLAIVGYGIYLLVAFAKASDDDKPDISPTPDISPVSGDSA 62

Query: 53  -----LPRIVSAINVNSL--NLPAPWFIYAFMGVGILMCCITFLGCIAAEMINGFCLCFY 105
                 P +++    +++   LP  WFIY F+GVG ++  ++  GCI A   NG CL  Y
Sbjct: 63  LIQFGRPMLMAVSLSDNIFDKLPKAWFIYLFIGVGAVLFVVSCFGCIGATTRNGCCLICY 122

Query: 106 TLIITVLVLAEAALVGFIAIDHHWREDIPVDPTGQLESLQSFIEENQDICRWVGIXXXXX 165
           ++++ +L+L E     F+  D  W+E+IP D TG  + +  F+ EN DI RWV +     
Sbjct: 123 SILVALLILVELGCAAFLFFDKSWKEEIPTDKTGDFDMIYGFLRENWDIVRWVALGIVIF 182

Query: 166 XXXXXXXXXXXRATISTRRADFDYEDEY-DVRGRSWEPLL-NPQSGQPSG---SGKVDNR 220
                      RA    R AD+D +DE  + R +  +PLL N Q+G PSG   +G  D R
Sbjct: 183 EALLFLLALIVRAV--NRPADYDSDDELINPRQQVRQPLLNNRQAGPPSGLPVAGTTDQR 240

Query: 221 GNHSDIWSSRMREKYGLNNGD 241
            N +D WS+RMREKYGL+  +
Sbjct: 241 PNRNDAWSTRMREKYGLDTSE 261


>Medtr5g014080.3 | tobamovirus multiplication protein 2A | HC |
           chr5:4658909-4665681 | 20130731
          Length = 289

 Score =  148 bits (374), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 134/261 (51%), Gaps = 26/261 (9%)

Query: 5   CCHVSLAFVLKFLNFLQAFVGVSILLYSVWMLNQW-----DHRVPQPPLPHIS------- 52
           CC      +LK LNF+    G++I+ Y +++L  +     D +    P P IS       
Sbjct: 3   CCRGFWECLLKLLNFILTVTGLAIVGYGIYLLVAFAKASDDDKPDISPTPDISPVSGDSA 62

Query: 53  -----LPRIVSAINVNSL--NLPAPWFIYAFMGVGILMCCITFLGCIAAEMINGFCLCFY 105
                 P +++    +++   LP  WFIY F+GVG ++  ++  GCI A   NG CL  Y
Sbjct: 63  LIQFGRPMLMAVSLSDNIFDKLPKAWFIYLFIGVGAVLFVVSCFGCIGATTRNGCCLICY 122

Query: 106 TLIITVLVLAEAALVGFIAIDHHWREDIPVDPTGQLESLQSFIEENQDICRWVGIXXXXX 165
           ++++ +L+L E     F+  D  W+E+IP D TG  + +  F+ EN DI RWV +     
Sbjct: 123 SILVALLILVELGCAAFLFFDKSWKEEIPTDKTGDFDMIYGFLRENWDIVRWVALGIVIF 182

Query: 166 XXXXXXXXXXXRATISTRRADFDYEDEY-DVRGRSWEPLL-NPQSGQPSG---SGKVDNR 220
                      RA    R AD+D +DE  + R +  +PLL N Q+G PSG   +G  D R
Sbjct: 183 EALLFLLALIVRAV--NRPADYDSDDELINPRQQVRQPLLNNRQAGPPSGLPVAGTTDQR 240

Query: 221 GNHSDIWSSRMREKYGLNNGD 241
            N +D WS+RMREKYGL+  +
Sbjct: 241 PNRNDAWSTRMREKYGLDTSE 261


>Medtr5g014080.5 | tobamovirus multiplication protein 2A | HC |
           chr5:4658909-4665681 | 20130731
          Length = 289

 Score =  148 bits (374), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 134/261 (51%), Gaps = 26/261 (9%)

Query: 5   CCHVSLAFVLKFLNFLQAFVGVSILLYSVWMLNQW-----DHRVPQPPLPHIS------- 52
           CC      +LK LNF+    G++I+ Y +++L  +     D +    P P IS       
Sbjct: 3   CCRGFWECLLKLLNFILTVTGLAIVGYGIYLLVAFAKASDDDKPDISPTPDISPVSGDSA 62

Query: 53  -----LPRIVSAINVNSL--NLPAPWFIYAFMGVGILMCCITFLGCIAAEMINGFCLCFY 105
                 P +++    +++   LP  WFIY F+GVG ++  ++  GCI A   NG CL  Y
Sbjct: 63  LIQFGRPMLMAVSLSDNIFDKLPKAWFIYLFIGVGAVLFVVSCFGCIGATTRNGCCLICY 122

Query: 106 TLIITVLVLAEAALVGFIAIDHHWREDIPVDPTGQLESLQSFIEENQDICRWVGIXXXXX 165
           ++++ +L+L E     F+  D  W+E+IP D TG  + +  F+ EN DI RWV +     
Sbjct: 123 SILVALLILVELGCAAFLFFDKSWKEEIPTDKTGDFDMIYGFLRENWDIVRWVALGIVIF 182

Query: 166 XXXXXXXXXXXRATISTRRADFDYEDEY-DVRGRSWEPLL-NPQSGQPSG---SGKVDNR 220
                      RA    R AD+D +DE  + R +  +PLL N Q+G PSG   +G  D R
Sbjct: 183 EALLFLLALIVRAV--NRPADYDSDDELINPRQQVRQPLLNNRQAGPPSGLPVAGTTDQR 240

Query: 221 GNHSDIWSSRMREKYGLNNGD 241
            N +D WS+RMREKYGL+  +
Sbjct: 241 PNRNDAWSTRMREKYGLDTSE 261


>Medtr5g014080.4 | tobamovirus multiplication protein 2A | HC |
           chr5:4658815-4665681 | 20130731
          Length = 289

 Score =  148 bits (374), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 134/261 (51%), Gaps = 26/261 (9%)

Query: 5   CCHVSLAFVLKFLNFLQAFVGVSILLYSVWMLNQW-----DHRVPQPPLPHIS------- 52
           CC      +LK LNF+    G++I+ Y +++L  +     D +    P P IS       
Sbjct: 3   CCRGFWECLLKLLNFILTVTGLAIVGYGIYLLVAFAKASDDDKPDISPTPDISPVSGDSA 62

Query: 53  -----LPRIVSAINVNSL--NLPAPWFIYAFMGVGILMCCITFLGCIAAEMINGFCLCFY 105
                 P +++    +++   LP  WFIY F+GVG ++  ++  GCI A   NG CL  Y
Sbjct: 63  LIQFGRPMLMAVSLSDNIFDKLPKAWFIYLFIGVGAVLFVVSCFGCIGATTRNGCCLICY 122

Query: 106 TLIITVLVLAEAALVGFIAIDHHWREDIPVDPTGQLESLQSFIEENQDICRWVGIXXXXX 165
           ++++ +L+L E     F+  D  W+E+IP D TG  + +  F+ EN DI RWV +     
Sbjct: 123 SILVALLILVELGCAAFLFFDKSWKEEIPTDKTGDFDMIYGFLRENWDIVRWVALGIVIF 182

Query: 166 XXXXXXXXXXXRATISTRRADFDYEDEY-DVRGRSWEPLL-NPQSGQPSG---SGKVDNR 220
                      RA    R AD+D +DE  + R +  +PLL N Q+G PSG   +G  D R
Sbjct: 183 EALLFLLALIVRAV--NRPADYDSDDELINPRQQVRQPLLNNRQAGPPSGLPVAGTTDQR 240

Query: 221 GNHSDIWSSRMREKYGLNNGD 241
            N +D WS+RMREKYGL+  +
Sbjct: 241 PNRNDAWSTRMREKYGLDTSE 261


>Medtr4g098860.2 | tetraspanin family protein | HC |
           chr4:40789028-40782918 | 20130731
          Length = 280

 Score =  128 bits (321), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 130/245 (53%), Gaps = 18/245 (7%)

Query: 13  VLKFLNFLQAFVGVSILLYSVWMLNQWDHRVPQP----------PLPHISLPRIVSAINV 62
           +LK LNF+    G++++ Y +++L ++                  L  +  P +++    
Sbjct: 10  LLKLLNFILTITGLAMVGYGIYLLVEFSRASDNSMMLSAPSDDQTLVQLGRPMLMALPLS 69

Query: 63  NSL--NLPAPWFIYAFMGVGILMCCITFLGCIAAEMINGFCLCFYTLIITVLVLAEAALV 120
           +++  NLP  WFIY F+GVG ++  I+  GCIA+   NG CL  Y++++ +L+L E    
Sbjct: 70  DNIFDNLPKAWFIYLFIGVGAVLFVISCFGCIASMTRNGCCLSCYSILVVLLILVELGCA 129

Query: 121 GFIAIDHHWREDIPVDPTGQLESLQSFIEENQDICRWVGIXXXXXXXXXXXXXXXXRATI 180
            FI  D  W+E+IP D TG  + + +F+ EN  I +WV +                RA  
Sbjct: 130 AFIFFDKSWKEEIPRDKTGDFDMVYNFLRENWTIVKWVALGIVIFEALLFILALIVRA-- 187

Query: 181 STRRADFDYEDEY-DVRGRSWEPLLNPQSGQPSG---SGKVDNRGNHSDIWSSRMREKYG 236
           + R  D+D ++E+ + R ++ +PLLN  +G   G   +G  D R N +D WS+RMREKYG
Sbjct: 188 ANRPVDYDSDEEFINPRQQARQPLLNRPAGPAPGVPVTGTTDPRSNRNDAWSTRMREKYG 247

Query: 237 LNNGD 241
           L+  +
Sbjct: 248 LDTSE 252


>Medtr4g098860.1 | tetraspanin family protein | HC |
           chr4:40788819-40782902 | 20130731
          Length = 280

 Score =  128 bits (321), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 130/245 (53%), Gaps = 18/245 (7%)

Query: 13  VLKFLNFLQAFVGVSILLYSVWMLNQWDHRVPQP----------PLPHISLPRIVSAINV 62
           +LK LNF+    G++++ Y +++L ++                  L  +  P +++    
Sbjct: 10  LLKLLNFILTITGLAMVGYGIYLLVEFSRASDNSMMLSAPSDDQTLVQLGRPMLMALPLS 69

Query: 63  NSL--NLPAPWFIYAFMGVGILMCCITFLGCIAAEMINGFCLCFYTLIITVLVLAEAALV 120
           +++  NLP  WFIY F+GVG ++  I+  GCIA+   NG CL  Y++++ +L+L E    
Sbjct: 70  DNIFDNLPKAWFIYLFIGVGAVLFVISCFGCIASMTRNGCCLSCYSILVVLLILVELGCA 129

Query: 121 GFIAIDHHWREDIPVDPTGQLESLQSFIEENQDICRWVGIXXXXXXXXXXXXXXXXRATI 180
            FI  D  W+E+IP D TG  + + +F+ EN  I +WV +                RA  
Sbjct: 130 AFIFFDKSWKEEIPRDKTGDFDMVYNFLRENWTIVKWVALGIVIFEALLFILALIVRA-- 187

Query: 181 STRRADFDYEDEY-DVRGRSWEPLLNPQSGQPSG---SGKVDNRGNHSDIWSSRMREKYG 236
           + R  D+D ++E+ + R ++ +PLLN  +G   G   +G  D R N +D WS+RMREKYG
Sbjct: 188 ANRPVDYDSDEEFINPRQQARQPLLNRPAGPAPGVPVTGTTDPRSNRNDAWSTRMREKYG 247

Query: 237 LNNGD 241
           L+  +
Sbjct: 248 LDTSE 252