Miyakogusa Predicted Gene

Lj0g3v0346719.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0346719.1 CUFF.23794.1
         (194 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g015340.1 | hypothetical protein | LC | chr4:4574182-45731...    92   2e-19
Medtr7g052570.1 | transmembrane protein, putative | LC | chr7:18...    67   1e-11
Medtr0088s0110.1 | hypothetical protein | LC | scaffold0088:5163...    52   3e-07

>Medtr4g015340.1 | hypothetical protein | LC | chr4:4574182-4573151
           | 20130731
          Length = 317

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 80/163 (49%), Gaps = 26/163 (15%)

Query: 1   MPNGQKEIAHMADSVYFSEKFFLANVLYVPSFNFNLISVSALVKSLNCRLVIFDECCLLQ 60
           +PN      H A +V FS  F + NVLY P+FN NLIS++ ++ SLNC +    + C++Q
Sbjct: 157 LPNKTTITIHHAGTVIFSPHFHITNVLYSPNFNVNLISIAKIISSLNCYVKFLPDKCIIQ 216

Query: 61  ERPTLKTIGAAEERGGLYAVIDPAVKAKHPPAEGNIKTQVSHFNFCQFDCN--------- 111
           +  T K IG A+  GGLY       K +  P+     + VSH + C    N         
Sbjct: 217 DLITNKMIGLADPYGGLY-------KLRISPSAFAFNSSVSHISHCNISINKDYQSFVSS 269

Query: 112 ---------LWHLRLGHTSSKKLAIPQKIFPFITCKQITSPCD 145
                    LWH RLGH S+++L+    ++P I C    + CD
Sbjct: 270 SFTHIPDSALWHFRLGHLSNQRLSNMHSLYPSI-CVDNKAICD 311


>Medtr7g052570.1 | transmembrane protein, putative | LC |
           chr7:18475011-18475877 | 20130731
          Length = 236

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 7/133 (5%)

Query: 1   MPNGQKEIAHMADSVYFSEKFFLANVLYVPSFNFNLISVSALVKSLNCRLVIFDECCLLQ 60
           +PN    +     +V FS   +L NVLY  +FN NLIS+S L KS++C +    + C++Q
Sbjct: 102 LPNCSSVLVKHEGNVSFSSSLYLINVLYSFAFNLNLISISKLYKSISCFVQFSTDSCIIQ 161

Query: 61  ERPTLKTIGAAEERGGLYA-VIDPAVKAKHPPAEGNIK-----TQVSHFNFCQFDCN-LW 113
           +  T K IG  +   GLY  V+             N K       +S        C+ LW
Sbjct: 162 DLNTRKMIGLGDNLNGLYRLVVHVDSSKSSSFTSFNKKCSAFCNNISKPESTVIPCSALW 221

Query: 114 HLRLGHTSSKKLA 126
           H+RLGH S ++L+
Sbjct: 222 HVRLGHLSHQRLS 234


>Medtr0088s0110.1 | hypothetical protein | LC |
           scaffold0088:51638-52135 | 20130731
          Length = 165

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 46/77 (59%)

Query: 1   MPNGQKEIAHMADSVYFSEKFFLANVLYVPSFNFNLISVSALVKSLNCRLVIFDECCLLQ 60
           + N    + H   ++ F+   +L++VLY P+F  +LISV+ L +SL C L    +  L++
Sbjct: 89  LSNRNSILVHYGGTISFTSHIYLSHVLYSPTFTLHLISVAKLCQSLFCSLQFSLDHFLIK 148

Query: 61  ERPTLKTIGAAEERGGL 77
           ++ +LK IG A++  GL
Sbjct: 149 DKMSLKMIGLAKQPDGL 165