Miyakogusa Predicted Gene
- Lj0g3v0346119.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0346119.1 Non Characterized Hit- tr|E0VEP1|E0VEP1_PEDHC
Protein SET, putative OS=Pediculus humanus subsp.
corp,33.13,6e-18,SUBFAMILY NOT NAMED,NULL; TESTIS-SPECIFIC Y-ENCODED
PROTEIN,Nucleosome assembly protein (NAP);
NAP,N,NODE_56738_length_914_cov_41.086433.path2.1
(187 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g108570.1 | nucleosome/chromatin assembly factor group pro... 178 2e-45
Medtr3g040400.1 | nucleosome/chromatin assembly factor group pro... 178 3e-45
Medtr4g108570.2 | nucleosome/chromatin assembly factor group pro... 178 3e-45
Medtr4g115160.2 | nucleosome assembly protein | LC | chr4:475269... 124 7e-29
Medtr4g115160.1 | nucleosome assembly protein | LC | chr4:475269... 124 7e-29
Medtr0240s0030.1 | nucleosome/chromatin assembly factor group pr... 77 6e-15
Medtr6g090475.1 | nucleosome assembly protein | LC | chr6:343872... 69 4e-12
Medtr4g115820.1 | nucleosome assembly protein | HC | chr4:478677... 67 9e-12
Medtr2g024970.1 | nucleosome assembly protein | LC | chr2:883928... 53 2e-07
>Medtr4g108570.1 | nucleosome/chromatin assembly factor group
protein | HC | chr4:44984273-44980061 | 20130731
Length = 254
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/192 (48%), Positives = 120/192 (62%), Gaps = 20/192 (10%)
Query: 1 MEKLEEMEDKINLIHMMA----FQVDD-YKERLKSAYQERSKIIDSIPGFWFTVVLLKHP 55
+EKL+E++D + I+ A +++ Y E K Y +R++II SIP FW L HP
Sbjct: 26 IEKLQEIQDDLEKINDEASDKVLEIEQKYNEIRKPVYDKRNEIIKSIPDFWLNA-FLSHP 84
Query: 56 AYRQLFNQEDHKIFQYFTSLEVEDDMDVNSSYSITFNFKPNPYFENTKLQKTLTFLQEGT 115
+L N ED KIF+Y +SLEVED+ DV S Y+IT NF PNPYFE++KL KT TF +EGT
Sbjct: 85 TLSELLNDEDQKIFKYLSSLEVEDNKDVKSGYTITLNFNPNPYFEDSKLSKTFTFREEGT 144
Query: 116 TKITATPIKWKQ--------------NNQVPADFGFFSWFTMTEQKDDVHHIHDEIACLF 161
T+ITATPIKWK+ N + P D F SWF EQKDD+ IHDE+A L
Sbjct: 145 TEITATPIKWKEGKGIPNGDNHEKKGNKRPPVDVSFLSWFCDCEQKDDMADIHDELAELI 204
Query: 162 KDDVWKYALFYF 173
KDD+W L YF
Sbjct: 205 KDDLWSNPLIYF 216
>Medtr3g040400.1 | nucleosome/chromatin assembly factor group
protein | HC | chr3:14196167-14201171 | 20130731
Length = 260
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 95/192 (49%), Positives = 122/192 (63%), Gaps = 20/192 (10%)
Query: 1 MEKLEEMEDKINLIHMMA----FQVDD-YKERLKSAYQERSKIIDSIPGFWFTVVLLKHP 55
+EKL+E++D+I I+ A +++ Y E K Y +R+ +I SIP FW T L HP
Sbjct: 29 IEKLQEIQDEIEKINEEASDKVLEIEQKYNEVRKPVYDKRNDVIKSIPDFWLTA-FLSHP 87
Query: 56 AYRQLFNQEDHKIFQYFTSLEVEDDMDVNSSYSITFNFKPNPYFENTKLQKTLTFLQEGT 115
L N+ED KIF++ SLEVED DV S YSITFNF NPYFE++KL KT TFL+EGT
Sbjct: 88 VLGDLLNEEDQKIFKHLISLEVEDHKDVKSGYSITFNFNSNPYFEDSKLVKTFTFLEEGT 147
Query: 116 TKITATPIKWKQNNQVP--------------ADFGFFSWFTMTEQKDDVHHIHDEIACLF 161
TK+TATPIKWK+ +P +D FF+WF TEQKD++ IHDEIA +
Sbjct: 148 TKLTATPIKWKEGKGIPNGVSHEKKGNKRAASDISFFTWFCDTEQKDEMGDIHDEIAEMI 207
Query: 162 KDDVWKYALFYF 173
KDD+W L YF
Sbjct: 208 KDDLWPNPLNYF 219
>Medtr4g108570.2 | nucleosome/chromatin assembly factor group
protein | HC | chr4:44984273-44980061 | 20130731
Length = 266
Score = 178 bits (451), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 94/192 (48%), Positives = 120/192 (62%), Gaps = 20/192 (10%)
Query: 1 MEKLEEMEDKINLIHMMA----FQVDD-YKERLKSAYQERSKIIDSIPGFWFTVVLLKHP 55
+EKL+E++D + I+ A +++ Y E K Y +R++II SIP FW L HP
Sbjct: 26 IEKLQEIQDDLEKINDEASDKVLEIEQKYNEIRKPVYDKRNEIIKSIPDFWLNA-FLSHP 84
Query: 56 AYRQLFNQEDHKIFQYFTSLEVEDDMDVNSSYSITFNFKPNPYFENTKLQKTLTFLQEGT 115
+L N ED KIF+Y +SLEVED+ DV S Y+IT NF PNPYFE++KL KT TF +EGT
Sbjct: 85 TLSELLNDEDQKIFKYLSSLEVEDNKDVKSGYTITLNFNPNPYFEDSKLSKTFTFREEGT 144
Query: 116 TKITATPIKWKQ--------------NNQVPADFGFFSWFTMTEQKDDVHHIHDEIACLF 161
T+ITATPIKWK+ N + P D F SWF EQKDD+ IHDE+A L
Sbjct: 145 TEITATPIKWKEGKGIPNGDNHEKKGNKRPPVDVSFLSWFCDCEQKDDMADIHDELAELI 204
Query: 162 KDDVWKYALFYF 173
KDD+W L YF
Sbjct: 205 KDDLWSNPLIYF 216
>Medtr4g115160.2 | nucleosome assembly protein | LC |
chr4:47526912-47532730 | 20130731
Length = 367
Score = 124 bits (310), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 111/212 (52%), Gaps = 46/212 (21%)
Query: 2 EKLEEMEDKINLIHMMAFQVDDYKERLKSAYQERSKIIDSIPGFWFTVVLLKHPAYRQLF 61
++L E+E K+N E + Y +R ++I SIP FW L+HP +++
Sbjct: 145 DQLREIEQKLN-------------ETIDPVYIKRDEMIKSIPNFWLNA-FLRHPTLKKVM 190
Query: 62 NQEDHKIFQYFTSLEVEDDMDVNSSYSI-TFNFKPNPYFENTKLQKTLTFLQEGTT---- 116
N+ED KIF+Y +SL++ D+ S+ + T F PNPYFE++KL K T+L EGTT
Sbjct: 191 NEEDQKIFKYLSSLDIRAHKDIKSACTTFTLKFNPNPYFEDSKLSKIFTYLLEGTTDHPL 250
Query: 117 -----KITATPIKWKQ--------------NNQVPADFGFFSWFTMTEQKDDVHHIHDEI 157
ITATPI+WK+ NN+ P D F SWF EQKDD+ +I +
Sbjct: 251 RWKVGNITATPIRWKEVKGIPDGTDHEEKGNNRAPVDVRFLSWFCDCEQKDDMAYIDYAV 310
Query: 158 ACLFKDDVWKYALFYFKMES---YDSDEEWVD 186
A +F + L Y K E D+D+E ++
Sbjct: 311 ANIFAN-----PLAYLKNEEPDVKDADDEVIE 337
>Medtr4g115160.1 | nucleosome assembly protein | LC |
chr4:47526912-47532730 | 20130731
Length = 355
Score = 124 bits (310), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 105/202 (51%), Gaps = 43/202 (21%)
Query: 2 EKLEEMEDKINLIHMMAFQVDDYKERLKSAYQERSKIIDSIPGFWFTVVLLKHPAYRQLF 61
++L E+E K+N E + Y +R ++I SIP FW L+HP +++
Sbjct: 145 DQLREIEQKLN-------------ETIDPVYIKRDEMIKSIPNFWLNA-FLRHPTLKKVM 190
Query: 62 NQEDHKIFQYFTSLEVEDDMDVNSSYSI-TFNFKPNPYFENTKLQKTLTFLQEGTT---- 116
N+ED KIF+Y +SL++ D+ S+ + T F PNPYFE++KL K T+L EGTT
Sbjct: 191 NEEDQKIFKYLSSLDIRAHKDIKSACTTFTLKFNPNPYFEDSKLSKIFTYLLEGTTDHPL 250
Query: 117 -----KITATPIKWKQ--------------NNQVPADFGFFSWFTMTEQKDDVHHIHDEI 157
ITATPI+WK+ NN+ P D F SWF EQKDD+ +I +
Sbjct: 251 RWKVGNITATPIRWKEVKGIPDGTDHEEKGNNRAPVDVRFLSWFCDCEQKDDMAYIDYAV 310
Query: 158 ACLFKDDVWKYALFYFKMESYD 179
A +F + L Y K E D
Sbjct: 311 ANIFAN-----PLAYLKNEEPD 327
>Medtr0240s0030.1 | nucleosome/chromatin assembly factor group
protein | LC | scaffold0240:10090-10820 | 20130731
Length = 86
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 28 LKSAYQERSKIIDSIPGFWFTVVLLKHPAYRQLFNQEDHKIF-QYFTSLEVEDDMDVNSS 86
LK +R K++ ++P FW HP L N +DH+IF +Y +S+EVED+ DV+++
Sbjct: 3 LKVLTDKRGKVLKTVPKFWLHA-FTAHPIIVNLLNNKDHEIFDEYLSSIEVEDNQDVSTA 61
Query: 87 YSITFNFKPNPYFENTKLQKTLTFL 111
YSITFNF N YF+N + K++ F+
Sbjct: 62 YSITFNFNDNAYFDNQSIAKSIIFI 86
>Medtr6g090475.1 | nucleosome assembly protein | LC |
chr6:34387203-34387897 | 20130731
Length = 159
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 27/120 (22%)
Query: 70 QYFTSLEVEDDMDVNSSYSITFNFKPNPYFENTKLQKTLTFLQEGTTKITATPIKWKQNN 129
+Y S+EVED+ D S YSITFNF NPYF+N L K+LTF + + AT I+WK+
Sbjct: 37 EYLNSIEVEDNQDAKSGYSITFNFDENPYFDNPSLAKSLTFHEGKLKETKATTIQWKKGK 96
Query: 130 QVPAD--------------------------FGFFSWFTMTEQKDDVHHIHDEIACLFKD 163
+P + + FF+WF +++++++ D++A L K+
Sbjct: 97 SMPDEVLESDDDNEVCPEKDDELMYEVKLTVWSFFNWFHTSKEQNEM-RFPDQVADLIKE 155
>Medtr4g115820.1 | nucleosome assembly protein | HC |
chr4:47867787-47865364 | 20130731
Length = 136
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 11/74 (14%)
Query: 70 QYFTSLEVEDDMDVNSSYSI-TFNFKPNPYFENTKLQKTLTFLQEGTTK----------I 118
+Y +SL++ + D+ S+ + T NF PNPYFE++ L KT +L+EGTTK I
Sbjct: 5 EYLSSLDIRANKDIKSANTTFTLNFNPNPYFEDSLLSKTFAYLREGTTKDYPIRWKEGNI 64
Query: 119 TATPIKWKQNNQVP 132
TATPI+WK+ +P
Sbjct: 65 TATPIRWKEGKGIP 78
>Medtr2g024970.1 | nucleosome assembly protein | LC |
chr2:8839286-8837880 | 20130731
Length = 215
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 26 ERLKSAYQERSKIIDSIPGFWFTVVLLKHPAYRQLFNQEDHKIFQ-YFTSLEVEDDMDVN 84
++L + R + I + GFWF V+ QL N+ D +I + + TS+EV D D
Sbjct: 66 DKLTVHCRNRKEQIARLSGFWFNVIKADLNLVSQL-NKTDSEILENHLTSIEVVYDADSK 124
Query: 85 SSYSITFNFKPNPYFENTKLQKTLTFLQEGTTKITATPIKWKQN--NQVP 132
+SI F+F N YF N ++ K F +T I WK+ N VP
Sbjct: 125 LKFSIIFDFIKNEYFSNDRIFKRFNFRDGVLISTESTCINWKKEILNIVP 174