Miyakogusa Predicted Gene

Lj0g3v0345939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0345939.1 tr|B9H2Q0|B9H2Q0_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_555746 PE=4
SV=1,87.89,0,GBP,Guanylate-binding protein, N-terminal;
GBP_C,Guanylate-binding protein, C-terminal; Interferon-i,CUFF.23774.1
         (290 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g088220.1 | guanylate-binding family protein | HC | chr4:3...   543   e-155
Medtr1g070940.1 | guanylate-binding family protein | HC | chr1:3...    64   2e-10
Medtr7g096020.1 | guanylate-binding family protein | HC | chr7:3...    61   1e-09
Medtr2g089300.1 | hypothetical protein | HC | chr2:37728371-3772...    60   4e-09

>Medtr4g088220.1 | guanylate-binding family protein | HC |
           chr4:34807836-34816151 | 20130731
          Length = 1060

 Score =  543 bits (1399), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 256/290 (88%), Positives = 271/290 (93%)

Query: 1   MFVYNQMGGIDEAALDRLSLVTQMTKHIRVRASGGKSSASELGQFSPIFVWLLRDFYLDL 60
           MF+YNQMGGIDEAALDRLSLVTQM KHIRVRASG K+SASE+GQFSPIFVWLLRDFYLDL
Sbjct: 157 MFIYNQMGGIDEAALDRLSLVTQMAKHIRVRASGEKTSASEIGQFSPIFVWLLRDFYLDL 216

Query: 61  TEDNRKITPRDYLELALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLNNENDLQ 120
           TEDNRKITPRDYLELALR VQG+  D+AAKNEIR+SIRALFPDRECFTLVRPLNNENDLQ
Sbjct: 217 TEDNRKITPRDYLELALRSVQGNRNDVAAKNEIRESIRALFPDRECFTLVRPLNNENDLQ 276

Query: 121 RLDQISMDKLRPEFRAGLDALTKFVFERTRPKQVGATMMTGPVLVGITESYLDAINHGAV 180
           RLDQIS DKLRPEFR  + AL KFVFERTRPKQVGATMMTGPVL+GITESYLDA+NHGAV
Sbjct: 277 RLDQISSDKLRPEFRRDIQALIKFVFERTRPKQVGATMMTGPVLIGITESYLDALNHGAV 336

Query: 181 PSISSSWQSVEEAERRRAYDSATEVYMSSFDRSIPPEEVALREAHEQAVQKSTAAFNASA 240
           P+ISSSWQSVEEAE RRAYD ATEVYM+SFDRS PPEEVAL EAHEQAVQKS +AFNASA
Sbjct: 337 PTISSSWQSVEEAECRRAYDFATEVYMASFDRSKPPEEVALMEAHEQAVQKSMSAFNASA 396

Query: 241 VGVGSARKKYAGLLQKFLKKAFEDYKKNAFMEADLQCSKAIQSMEKRLRA 290
           VGVG+ARKKY G LQKFLKKAFEDYK+NAFMEAD+QCS AI SMEKRLRA
Sbjct: 397 VGVGAARKKYEGQLQKFLKKAFEDYKRNAFMEADIQCSNAIHSMEKRLRA 446


>Medtr1g070940.1 | guanylate-binding family protein | HC |
           chr1:31412653-31405961 | 20130731
          Length = 596

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 126/294 (42%), Gaps = 34/294 (11%)

Query: 1   MFVYNQMGGIDEAALDRLSLVTQMTKHIRVRASGGKSSASELGQFSPI-FVWLL-RDFYL 58
           + VYN    I EA + RLS   ++ +    R  G   +      F P   +WL+ RDF  
Sbjct: 146 VLVYNLPETIREADISRLSFAVELAEEFYGRVKGDDVA------FEPAKLLWLIQRDFL- 198

Query: 59  DLTEDNRKITPRDYLELALR--PVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLNNE 116
                 +  + ++ +  AL+  P     ++I   N+IRDS+  +  +   F+L +P    
Sbjct: 199 ------QGKSVQEMVNEALQRVPNTNGDKNIDLVNQIRDSLAMMGNNNTAFSLPQPHIQR 252

Query: 117 NDLQRLDQISMDKLRPEFRAGLDALTKFVFERTRPKQVGATMMTGPVLVGITESYLDAIN 176
             L  ++ + +D+L    R  L  L   +     PK V    + G   V   E  LDA+N
Sbjct: 253 TKLCDMNDVELDQLYVTRREQLKELVTSIIS---PKIVQGKTLNGKEFVSFLEQILDALN 309

Query: 177 HGAVPSISSSWQSVEEAERRRAYDSATEVY---MSSFDRSIPPEEVALREAHEQAVQKST 233
            G +PS      S+ E   +   +   ++Y   M++ D  +P  E  L+  H ++  +  
Sbjct: 310 KGEIPSSG----SLVEVFNKGIIERCLKLYGEKMATLD--LPLSEEYLQGVHNRSRNEVM 363

Query: 234 AAFNASAVGVGSARKKYAGLLQKFLKKAFEDYKKNAFMEADLQCSKAIQSMEKR 287
             F+    G   A+K    L ++ +KK +    KN  ++ + Q SK  +++  R
Sbjct: 364 KVFDQQHFGHHHAKKSTMQLNEE-IKKMY----KNVILQNEYQSSKLCEALYIR 412


>Medtr7g096020.1 | guanylate-binding family protein | HC |
           chr7:38488910-38496293 | 20130731
          Length = 604

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 125/291 (42%), Gaps = 34/291 (11%)

Query: 1   MFVYNQMGGIDEAALDRLSLVTQMTKHIRVRASGGKSSASELGQFSPI-FVWLL-RDFYL 58
           + +YN    I EA + RLS   ++ +    R  G   +      F P   +WL+ RDF  
Sbjct: 199 VLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVA------FEPAKLLWLIQRDFL- 251

Query: 59  DLTEDNRKITPRDYLELALRPVQGSGRD--IAAKNEIRDSIRALFPDRECFTLVRPLNNE 116
                 +  + +  ++ ALR V    RD  I   N+IRDS+  +  +   F+L +P    
Sbjct: 252 ------QGKSVQQMVDEALRQVPNKDRDRNIDMINQIRDSLAIMGDNSTAFSLPQP---- 301

Query: 117 NDLQR--LDQISMDKLRPEFRAGLDALTKFVFERTRPKQVGATMMTGPVLVGITESYLDA 174
             LQR  L  +   +L P +    + L + V    RPK V    + G   V   +  L+A
Sbjct: 302 -HLQRTKLCDLKDGELDPSYVKKREKLKELVSSIIRPKIVQGKSLNGKEFVSFLKQILEA 360

Query: 175 INHGAVPSISSSWQSVEEAERRRAYDSATEVYMSSF-DRSIPPEEVALREAHEQAVQKST 233
           +N G +PS      S+ E   +   +   ++Y       ++P  E  L+ +H+ A   + 
Sbjct: 361 LNKGEIPSTG----SLVEIFNKDILERCLKLYSEKMATLALPLPEGYLQASHDMARGDAM 416

Query: 234 AAFNASAVGVGSARKKYAGLLQKFLKKAFEDYKKNAFMEADLQCSKAIQSM 284
            AF+    G   A+K    L ++ + K F    KN  ++ + + SK  +++
Sbjct: 417 QAFDQQHFGRHHAKKSVTQLDEE-IDKVF----KNVILQNEYKSSKLCEAL 462


>Medtr2g089300.1 | hypothetical protein | HC |
          chr2:37728371-37726578 | 20130731
          Length = 95

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 42/75 (56%), Gaps = 27/75 (36%)

Query: 9  GIDEAALDRLSLVTQMTKHIRVRASGGKSSASELGQFSPIFVWLLRDFYLDLTEDNRKIT 68
           + +AALD+LSLVTQ+ KHI V                           +DLTE+NRK T
Sbjct: 42 SMSDAALDQLSLVTQVAKHILV---------------------------IDLTEENRKTT 74

Query: 69 PRDYLELALRPVQGS 83
          PRDYLELAL+ VQG+
Sbjct: 75 PRDYLELALQSVQGN 89