Miyakogusa Predicted Gene

Lj0g3v0345919.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0345919.1 tr|Q93XN3|Q93XN3_GOSHI Salicylic acid-induced 1
protein (Fragment) OS=Gossypium hirsutum PE=2
SV=1,32.28,3e-17,seg,NULL; DUF588,Uncharacterised protein family
UPF0497, trans-membrane plant; OS08G0536200 PROTEIN,,CUFF.23728.1
         (186 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0160s0040.1 | CASP POPTRDRAFT-like protein | HC | scaffold0...   269   1e-72
Medtr3g064310.1 | CASP POPTRDRAFT-like protein | HC | chr3:28945...   102   3e-22
Medtr5g076480.1 | CASP POPTRDRAFT-like protein | HC | chr5:32632...   101   4e-22
Medtr2g026530.1 | CASP POPTRDRAFT-like protein | HC | chr2:95933...    54   9e-08
Medtr2g026530.2 | CASP POPTRDRAFT-like protein | HC | chr2:95933...    53   1e-07
Medtr0693s0030.1 | CASP POPTRDRAFT-like protein | HC | scaffold0...    50   1e-06

>Medtr0160s0040.1 | CASP POPTRDRAFT-like protein | HC |
           scaffold0160:28011-30206 | 20130731
          Length = 187

 Score =  269 bits (687), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 125/185 (67%), Positives = 152/185 (82%)

Query: 2   RTHIHDSPSVKNHLPMLKVFDSSLRLFAVPLSVATIWITVTNNQDNSIYGMLKYSNLLGL 61
           R HI D+ S +N+LPMLK+ DSSLRL +VPLS+ATIWITVTN QDN+ YG LKYS++ GL
Sbjct: 3   RVHIDDNASGENNLPMLKLLDSSLRLCSVPLSLATIWITVTNKQDNTSYGTLKYSDISGL 62

Query: 62  KYMVFXXXXXXXXXXXXXXXXWVRYVVSKAWIFFISDQIVAYLLVTSVAASMEIHYLAYN 121
           KYM+F                WVRY+++KAWIFFISDQ+VAYL+VTS+AA+MEI+YLAYN
Sbjct: 63  KYMIFVSALCAGYAIVAAVCSWVRYLMTKAWIFFISDQVVAYLMVTSIAATMEIYYLAYN 122

Query: 122 GAKEDSWSEACSIYGRFCSKVKLAFILQMITFLCFIILAVISAFRAFSLFDPPSVTAQEM 181
           GA+EDSWS+ACS YG+FCSKVKLA IL MITF CF +LA+ISAFRAFS+FDPPSV +QE+
Sbjct: 123 GAREDSWSQACSSYGKFCSKVKLALILHMITFGCFFVLAIISAFRAFSVFDPPSVNSQEV 182

Query: 182 QEDRY 186
            EDR+
Sbjct: 183 YEDRH 187


>Medtr3g064310.1 | CASP POPTRDRAFT-like protein | HC |
           chr3:28945240-28941390 | 20130731
          Length = 217

 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 2/175 (1%)

Query: 12  KNHLPMLKVFDSSLRLFAVPLSVATIWITVTNNQDNSIYGMLKYSNLLGLKYMVFXXXXX 71
            N    L+  ++ LRL  + L VA + + + N+++N  YG + Y++L   +Y+V      
Sbjct: 36  GNTTSFLRTAETFLRLLPIGLCVAALVLMLKNSEEND-YGSVSYNDLGAFRYLVHANGIC 94

Query: 72  XXXXXXXXXXXWV-RYVVSKAWIFFISDQIVAYLLVTSVAASMEIHYLAYNGAKEDSWSE 130
                         R  + +AW FF  DQ++ Y+++++ A+SME+ YLA NG     W+ 
Sbjct: 95  AGYSLLSAVVVAAPRPTLLRAWTFFFLDQVLTYIILSAGASSMEVVYLAENGDSATVWNS 154

Query: 131 ACSIYGRFCSKVKLAFILQMITFLCFIILAVISAFRAFSLFDPPSVTAQEMQEDR 185
           AC  +G+FC KV  +  +  +   C++IL++IS+F+ FS +D P+        D 
Sbjct: 155 ACGSFGQFCHKVTASVAITFVALFCYVILSLISSFKLFSNYDVPASCPNTTGNDH 209


>Medtr5g076480.1 | CASP POPTRDRAFT-like protein | HC |
           chr5:32632182-32630106 | 20130731
          Length = 209

 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 3/186 (1%)

Query: 1   MRTHIHDSPSVKNHLPMLKVFDSSLRLFAVPLSVATIWITVTNNQDNSIYGMLKYSNLLG 60
           M   + D         +L++ ++ LRLF + L V  + I + N+++N  YG + YS+L  
Sbjct: 17  MGNSVVDEEFEGKEASLLRIVETFLRLFPICLCVTALIIMLKNSEENE-YGSVAYSDLGA 75

Query: 61  LKYMVFXXXXXXXXXXXXXXXXWVRY--VVSKAWIFFISDQIVAYLLVTSVAASMEIHYL 118
            +Y+V                  V     + KAW FF+ DQ+  Y+++ + A   E+ YL
Sbjct: 76  FRYLVHANGICAGYSLFSAVIVAVPRPSTMPKAWAFFLLDQVQTYIILAAGAVLTEVLYL 135

Query: 119 AYNGAKEDSWSEACSIYGRFCSKVKLAFILQMITFLCFIILAVISAFRAFSLFDPPSVTA 178
           A  G     WS AC  +G FC K+K + ++  I  +C+I+L++IS++R FS +D P+   
Sbjct: 136 AEYGVPTAGWSSACGSFGSFCHKIKASLVITFIAVVCYILLSLISSYRLFSKYDAPAEFN 195

Query: 179 QEMQED 184
               +D
Sbjct: 196 NNSNKD 201


>Medtr2g026530.1 | CASP POPTRDRAFT-like protein | HC |
           chr2:9593399-9595933 | 20130731
          Length = 201

 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 84/183 (45%), Gaps = 12/183 (6%)

Query: 5   IHDSPSVKNHLPMLKVFDSSLRLFAVPLSVATIWITVTNNQDNSIYGMLKYSNLLGLKYM 64
           ++ S ++K     +++ +  LR   + L V  + + VT++Q    + + K +    +K +
Sbjct: 15  VYHSTNMKVLDRRVRITELVLRFVNLGLGVLAVVLIVTDSQVREFFTIQKKAKFTDMKAL 74

Query: 65  VFXXXXXXXXXXXXXXXXWVRYVVSK-----------AWIFFISDQIVAYLLVTSVAASM 113
           VF                 +R VVS            AW  F  DQ++AY+ V +V+A+ 
Sbjct: 75  VFLVVANAIAAGYSLIQG-LRCVVSMIKGSVLFNKPLAWAIFSCDQVMAYITVAAVSAAA 133

Query: 114 EIHYLAYNGAKEDSWSEACSIYGRFCSKVKLAFILQMITFLCFIILAVISAFRAFSLFDP 173
           +    A  G ++  W + C++YG+FC++V        +  L  ++++ ISAF  F L+  
Sbjct: 134 QSAVFAKMGQEQLQWMKICNMYGKFCNQVGEGLASAFLVSLSMVVVSCISAFSLFRLYGG 193

Query: 174 PSV 176
             +
Sbjct: 194 SKI 196


>Medtr2g026530.2 | CASP POPTRDRAFT-like protein | HC |
           chr2:9593399-9595933 | 20130731
          Length = 181

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 12/170 (7%)

Query: 18  LKVFDSSLRLFAVPLSVATIWITVTNNQDNSIYGMLKYSNLLGLKYMVFXXXXXXXXXXX 77
           +++ +  LR   + L V  + + VT++Q    + + K +    +K +VF           
Sbjct: 8   VRITELVLRFVNLGLGVLAVVLIVTDSQVREFFTIQKKAKFTDMKALVFLVVANAIAAGY 67

Query: 78  XXXXXWVRYVVSK-----------AWIFFISDQIVAYLLVTSVAASMEIHYLAYNGAKED 126
                 +R VVS            AW  F  DQ++AY+ V +V+A+ +    A  G ++ 
Sbjct: 68  SLIQG-LRCVVSMIKGSVLFNKPLAWAIFSCDQVMAYITVAAVSAAAQSAVFAKMGQEQL 126

Query: 127 SWSEACSIYGRFCSKVKLAFILQMITFLCFIILAVISAFRAFSLFDPPSV 176
            W + C++YG+FC++V        +  L  ++++ ISAF  F L+    +
Sbjct: 127 QWMKICNMYGKFCNQVGEGLASAFLVSLSMVVVSCISAFSLFRLYGGSKI 176


>Medtr0693s0030.1 | CASP POPTRDRAFT-like protein | HC |
           scaffold0693:2778-4089 | 20130731
          Length = 184

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 46/89 (51%)

Query: 86  YVVSKAWIFFISDQIVAYLLVTSVAASMEIHYLAYNGAKEDSWSEACSIYGRFCSKVKLA 145
           Y +  AWI F+ DQIV YL   +  ++ E    A  G++   W + C+ + RFC ++  A
Sbjct: 88  YYMHMAWISFLLDQIVVYLTFATNTSAFEACLFALTGSEAFQWMKVCNKFTRFCYQIGGA 147

Query: 146 FILQMITFLCFIILAVISAFRAFSLFDPP 174
            +   I  +   +++ ISA++   ++ P 
Sbjct: 148 ILCCYIASILMAMISTISAYKVLRMYSPK 176