Miyakogusa Predicted Gene

Lj0g3v0345729.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0345729.1 Non Characterized Hit- tr|J3MMT8|J3MMT8_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB07G2,33.33,6e-18,seg,NULL; UBIQUITIN_2,Ubiquitin supergroup; no
description,NULL; Ubiquitin-like,NULL,CUFF.23723.1
         (300 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g461560.1 | DEAD-box ATP-dependent RNA helicase, putative ...   338   4e-93

>Medtr2g461560.1 | DEAD-box ATP-dependent RNA helicase, putative |
           HC | chr2:25426629-25443935 | 20130731
          Length = 1196

 Score =  338 bits (867), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 185/300 (61%), Positives = 216/300 (72%), Gaps = 22/300 (7%)

Query: 1   MAEN-NEKEIQIRTLTGESTTLHITPSATVQHLKLLLNHSFSPATNSPNFHLFFKGEKLR 59
           MAE+ NEKEIQIRTLTGES TLHIT S+TVQ LKLLLNHSF PATNSPNFHLFFKG KL+
Sbjct: 1   MAEDSNEKEIQIRTLTGESITLHITRSSTVQQLKLLLNHSFPPATNSPNFHLFFKGNKLQ 60

Query: 60  LQAKIGSYPIQLGEFLVLVPFSKKDSTSTGTQNPDPVLDSSNVANSASGSTSNLADSTWS 119
           L  +IGSY I+ G+F+VL+PF KK+ T    + PD V  S NVA +A  STS+ AD+TWS
Sbjct: 61  LHDQIGSYQIESGDFVVLIPFVKKEPTQ--KEKPDSVFSSPNVACNA--STSSFADTTWS 116

Query: 120 NIMEDLSHLRDGTAECGDNSASNSEFGAFASEPSKXXXXXXXXXXQEKQIELPYHLILNT 179
           NIMEDLS LR+ T E         E                     EK+I LPYH+ILNT
Sbjct: 117 NIMEDLSELRETTEEIDVIKKKTVE------------GEMKRGLGSEKEINLPYHMILNT 164

Query: 180 LDCTCVFSEHNCEVFSKVLESVNCLSDLPLGHCKLLRKARLEGAFVKGGVTCLCPPWLKT 239
           LD T      + EVF KVLESVNCLSDLPLG+CKLL++  L+G    G VTCLCPPWLK 
Sbjct: 165 LDHT----SRSAEVFPKVLESVNCLSDLPLGYCKLLKRTCLKGNG-GGSVTCLCPPWLKM 219

Query: 240 VVKAFAFINIFSAFLHLQRRNITAFLLEEALNQVAKFGVKLGLHDVKHLSLLCPNCVLWM 299
           V+K+FAFINIFSAFLHLQ R +T  LL+EAL+Q+AKFGVKLG HD+K LSLLCP+ V ++
Sbjct: 220 VLKSFAFINIFSAFLHLQSRKVTTSLLDEALDQLAKFGVKLGAHDMKRLSLLCPHLVCFV 279