Miyakogusa Predicted Gene

Lj0g3v0345479.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0345479.1 Non Characterized Hit- tr|D8SZD2|D8SZD2_SELML
Putative uncharacterized protein OS=Selaginella
moelle,46.72,9e-19,seg,NULL,CUFF.23825.1
         (121 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g028030.1 | transcription elongation factor (TFIIS) family...   188   1e-48

>Medtr5g028030.1 | transcription elongation factor (TFIIS) family
           protein | HC | chr5:11713865-11718779 | 20130731
          Length = 496

 Score =  188 bits (477), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 92/121 (76%), Positives = 100/121 (82%)

Query: 1   MRNIEDERAPFRRPSVKKPANKAPGMQSRDSDLDLDLXXXXXXXXXXXXHASRPEATPMD 60
           MRN ED+R P+RRPSVKKPA KA GMQSRD DLDLDL            HASRPEATP+D
Sbjct: 376 MRNTEDDRVPYRRPSVKKPAAKAAGMQSRDGDLDLDLSQPRSGESSSRQHASRPEATPLD 435

Query: 61  FVIRPQSKVDPEEVRARAKQASHDQQRMKMNKKLQQLRAPKKRQLQATKLSVEGRGMIKY 120
           FVIRPQSK+DP+E+RARAKQA+ DQ RMKMNKKLQQLRAPKK+QLQATKLSVEGRGM KY
Sbjct: 436 FVIRPQSKIDPDEIRARAKQATQDQHRMKMNKKLQQLRAPKKKQLQATKLSVEGRGMAKY 495

Query: 121 L 121
            
Sbjct: 496 F 496