Miyakogusa Predicted Gene

Lj0g3v0345299.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0345299.1 Non Characterized Hit- tr|J3LQI0|J3LQI0_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB03G3,27.47,8e-19,DEAD,DNA/RNA helicase, DEAD/DEAH box type,
N-terminal; HELICASE-RELATED,NULL; P-loop containing
nucl,gene.g27047.t1.1
         (299 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g105390.1 | endoribonuclease dicer-like protein | HC | chr...   225   5e-59
Medtr7g118350.1 | endoribonuclease dicer-like protein | HC | chr...    97   3e-20
Medtr7g118350.2 | endoribonuclease dicer-like protein | HC | chr...    96   3e-20
Medtr1g060740.1 | endoribonuclease dicer-like protein | HC | chr...    96   4e-20
Medtr4g116860.1 | endoribonuclease dicer-like protein | HC | chr...    95   8e-20
Medtr2g030490.1 | endoribonuclease dicer-like protein | HC | chr...    93   4e-19
Medtr8g069975.1 | endoribonuclease dicer-like protein | HC | chr...    92   7e-19

>Medtr3g105390.1 | endoribonuclease dicer-like protein | HC |
           chr3:48587251-48600607 | 20130731
          Length = 1730

 Score =  225 bits (573), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 128/262 (48%), Positives = 163/262 (62%), Gaps = 24/262 (9%)

Query: 1   MLIKDIAQAIKSSGKKKLIIVLAPIVHLVHQLYNDLKHHTGFQVEEYYG-RGVDEWNLKT 59
           +LIK+  QAI+SSG KKLI+ LAP VHLV Q   ++K +T  QVEEYYG +GVD WNLK+
Sbjct: 85  LLIKETGQAIRSSGVKKLIVFLAPTVHLVSQQCKNIKLNTDLQVEEYYGSKGVDTWNLKS 144

Query: 60  WEKEVSENDVLVMTPQILLNALTKAFLKVEMISLMVIDECHNATGNHPYARIMKDPIARA 119
           W+KE+S+NDV+VMTPQILL+A  KAFL +EMI LMVIDECH A+GNHPYA+IM +   +A
Sbjct: 145 WQKEISDNDVMVMTPQILLDAFRKAFLSIEMICLMVIDECHWASGNHPYAKIMAEFYHQA 204

Query: 120 LYDVGQPQTXXXXXXXXIALFTQTIKRDKAQSACACVSAPSTW--MLESNCKVIPLLWIV 177
                              +    + +    S   C    S    +L+S   V+     +
Sbjct: 205 -----------NEKPKIFGMTASPVGKRGVSSTLVCEGQISDLENILDSRSYVVKDRTEM 253

Query: 178 RVRYQNLKAS---------WILRILTKVNL-FGQSDALLSEFQSNYKDVDSKFKTLHQRM 227
            V   + K S           L +  K+   + + D LLSEFQS+YKD+D KFK LHQRM
Sbjct: 254 DVYIPSAKESCRFYDPARFHALSLKPKIEASWSKCDVLLSEFQSDYKDMDQKFKALHQRM 313

Query: 228 SNDLAKVLYCLEDLGLLCAYEV 249
           SN+LAK+LYCLEDLGLLCAYE 
Sbjct: 314 SNELAKILYCLEDLGLLCAYEA 335


>Medtr7g118350.1 | endoribonuclease dicer-like protein | HC |
           chr7:49139858-49129556 | 20130731
          Length = 1880

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 71/115 (61%), Gaps = 1/115 (0%)

Query: 1   MLIKDIAQAIKSSGKKKLIIVLAPIVHLVHQLYNDLKHHTGFQVEEYYGR-GVDEWNLKT 59
           +LIK I + +    KK L + L P V LV+Q    ++  TG+QV  Y G  G D W+ + 
Sbjct: 252 LLIKSIHETLHLQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARR 311

Query: 60  WEKEVSENDVLVMTPQILLNALTKAFLKVEMISLMVIDECHNATGNHPYARIMKD 114
           W++E     VLVMT QILLN L  + +K+E I+L+++DECH+A   HPY+ +M +
Sbjct: 312 WQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSE 366


>Medtr7g118350.2 | endoribonuclease dicer-like protein | HC |
           chr7:49139858-49129556 | 20130731
          Length = 1841

 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 71/115 (61%), Gaps = 1/115 (0%)

Query: 1   MLIKDIAQAIKSSGKKKLIIVLAPIVHLVHQLYNDLKHHTGFQVEEYYGR-GVDEWNLKT 59
           +LIK I + +    KK L + L P V LV+Q    ++  TG+QV  Y G  G D W+ + 
Sbjct: 252 LLIKSIHETLHLQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARR 311

Query: 60  WEKEVSENDVLVMTPQILLNALTKAFLKVEMISLMVIDECHNATGNHPYARIMKD 114
           W++E     VLVMT QILLN L  + +K+E I+L+++DECH+A   HPY+ +M +
Sbjct: 312 WQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSE 366


>Medtr1g060740.1 | endoribonuclease dicer-like protein | HC |
           chr1:26454644-26463238 | 20130731
          Length = 1385

 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 77/115 (66%), Gaps = 2/115 (1%)

Query: 1   MLIKDIAQAIKSSGKKKLIIVLAPIVHLVHQLYNDLKHHTGFQVEEYYG-RGVDEWNLKT 59
           ML++  A  ++      + + L P V LV Q    L++HT  +V  Y+G +GVD W+   
Sbjct: 56  MLLRSYAYHLRKPSPY-IAVFLVPKVVLVSQQAKALRNHTDLKVGTYWGEKGVDNWDGAI 114

Query: 60  WEKEVSENDVLVMTPQILLNALTKAFLKVEMISLMVIDECHNATGNHPYARIMKD 114
           W++++ +++VLVMTP ILL+ L  +F+K++MI ++++DECH+A G HPYA IM++
Sbjct: 115 WKEQMEKHEVLVMTPAILLSCLRHSFIKLKMIKVLIMDECHHAAGRHPYACIMRE 169


>Medtr4g116860.1 | endoribonuclease dicer-like protein | HC |
           chr4:48375007-48390158 | 20130731
          Length = 1625

 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 73/115 (63%), Gaps = 3/115 (2%)

Query: 1   MLIKDIAQAIKSSGKKKLIIVLAPIVHLVHQLYNDLKHHTGFQVEEYYGRGVDEWNLKTW 60
           +L+ ++   IK   K  + + LAP V LVHQ    +   T F+V  Y G      + + W
Sbjct: 74  LLMHEMRHLIKKPNKD-VCVFLAPTVALVHQQAKVISDSTDFEVGTYCGSSKGTKSHQHW 132

Query: 61  EKEVSENDVLVMTPQILLNALTKAFLKVEMISLMVIDECHNA--TGNHPYARIMK 113
           E+E+ +N+VLVMTPQILL+ L+  F+K+EMI+L++ DECH+A    +HPYA IMK
Sbjct: 133 EEEIEQNEVLVMTPQILLHNLSHCFIKMEMITLLIFDECHHAQVKSSHPYAEIMK 187


>Medtr2g030490.1 | endoribonuclease dicer-like protein | HC |
           chr2:11495894-11486899 | 20130731
          Length = 1377

 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 73/115 (63%), Gaps = 2/115 (1%)

Query: 1   MLIKDIAQAIKSSGKKKLIIVLAPIVHLVHQLYNDLKHHTGFQVEEYYG-RGVDEWNLKT 59
           ML++  A  ++      + + L P V LV Q    L++HT  ++  Y+G  GVD W+   
Sbjct: 56  MLLRSYAYHLRKPSPY-IAVFLVPKVVLVSQQAEALRNHTDLKIGMYWGDMGVDYWDGDV 114

Query: 60  WEKEVSENDVLVMTPQILLNALTKAFLKVEMISLMVIDECHNATGNHPYARIMKD 114
           W+ E+ +++VLVMTP ILL+ L  +F+K+ MI ++++DECH+A G HPYA IM +
Sbjct: 115 WKGEMEKHEVLVMTPAILLSCLRHSFIKLSMIKVLIMDECHHAAGRHPYACIMTE 169


>Medtr8g069975.1 | endoribonuclease dicer-like protein | HC |
           chr8:29673147-29681500 | 20130731
          Length = 1219

 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 75/115 (65%), Gaps = 2/115 (1%)

Query: 1   MLIKDIAQAIKSSGKKKLIIVLAPIVHLVHQLYNDLKHHTGFQVEEYYG-RGVDEWNLKT 59
           ML++  A  ++      + + L P V LV Q    L++HT  +V  Y+G  GVD W+   
Sbjct: 56  MLLRSYAYHLRKPSPY-IAVFLVPKVVLVSQQAQALRNHTDLKVGMYWGDMGVDFWDGAI 114

Query: 60  WEKEVSENDVLVMTPQILLNALTKAFLKVEMISLMVIDECHNATGNHPYARIMKD 114
           W++++ +++VLVMTP ILL+ L  +F+K++MI ++++DECH+A G HPYA IM +
Sbjct: 115 WKEQMEKHEVLVMTPAILLSCLRHSFIKLKMIKVLIMDECHHADGRHPYACIMTE 169