Miyakogusa Predicted Gene

Lj0g3v0344619.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0344619.1 Non Characterized Hit- tr|C5Z771|C5Z771_SORBI
Putative uncharacterized protein Sb10g026020
OS=Sorghu,48.31,3e-16,CALMODULIN-BINDING PROTEIN-RELATED,NULL; FAMILY
NOT NAMED,NULL; coiled-coil,NULL,CUFF.23646.1
         (137 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g105590.1 | histidine kinase cytokinin receptor | HC | chr...   196   6e-51
Medtr1g013360.1 | histidine kinase cytokinin receptor | HC | chr...   185   1e-47
Medtr1g014670.1 | histidine kinase cytokinin receptor | HC | chr...   112   9e-26

>Medtr3g105590.1 | histidine kinase cytokinin receptor | HC |
           chr3:48693709-48698381 | 20130731
          Length = 949

 Score =  196 bits (497), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 100/130 (76%), Positives = 110/130 (84%), Gaps = 7/130 (5%)

Query: 1   MEKDSIED-MEIEVLPSMWPEDIVTDVGKQFNIEKPGMDQDMLEDVITTIEEPTIVDFKR 59
           MEK+ +ED MEIEVLPSMWPEDI  DVGKQFNIEKPG DQD+LE+V    E  TI DFKR
Sbjct: 1   MEKECVEDIMEIEVLPSMWPEDIGADVGKQFNIEKPGNDQDVLEEVSIIDEVTTIADFKR 60

Query: 60  LMELTSFTEKGSSQLAYLMKHWEYKQANVARLLREELDNLSKQRHDVELRKVEILEEHR- 118
           L+ELT+FTEKGSSQLAYLMKHWEYKQA+VARLLREELDNL+KQR DVELRK+EILEEHR 
Sbjct: 61  LIELTNFTEKGSSQLAYLMKHWEYKQASVARLLREELDNLNKQRQDVELRKLEILEEHRF 120

Query: 119 -----GGEGR 123
                GG+ R
Sbjct: 121 EDERYGGDKR 130


>Medtr1g013360.1 | histidine kinase cytokinin receptor | HC |
           chr1:3457586-3452043 | 20130731
          Length = 1012

 Score =  185 bits (470), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 95/133 (71%), Positives = 108/133 (81%), Gaps = 2/133 (1%)

Query: 1   MEKDSIEDM-EIEVLPSMWPEDIVTDVGKQFNIEKPGMDQDMLEDVITTIEEPTIVDFKR 59
           ME D IEDM +IE L SMWPED+ TDVGKQFNIEKPG DQDMLE+V T +EEP I DF+R
Sbjct: 5   MESDCIEDMMDIEELSSMWPEDVGTDVGKQFNIEKPGRDQDMLEEV-TILEEPAIADFQR 63

Query: 60  LMELTSFTEKGSSQLAYLMKHWEYKQANVARLLREELDNLSKQRHDVELRKVEILEEHRG 119
           LMELT++T+KGSSQLAYLM+HWEYKQAN  RLLREELDNLSKQR +VE RK+EIL+E+  
Sbjct: 64  LMELTNYTDKGSSQLAYLMQHWEYKQANAVRLLREELDNLSKQRKEVEQRKLEILKENNR 123

Query: 120 GEGRASVRGRKMP 132
            E   S  G K P
Sbjct: 124 FEEEISYGGDKRP 136


>Medtr1g014670.1 | histidine kinase cytokinin receptor | HC |
           chr1:3481967-3478794 | 20130731
          Length = 389

 Score =  112 bits (281), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 76/97 (78%), Gaps = 4/97 (4%)

Query: 37  MDQDMLEDVITTIEEPTIVDFKRLMELTSFTEKGSSQLAYLMKHWEYKQANVARLLREEL 96
           MDQ++LE+V T +EEP I DF+R++ELT +T+ GSSQLA L+KHWEYKQAN   LLREEL
Sbjct: 1   MDQNILEEV-TVLEEPIIADFQRIVELTDYTDIGSSQLANLVKHWEYKQANAVCLLREEL 59

Query: 97  DNLSKQRHDVELRKVEILEE-HRGGEGRASVRGRKMP 132
           DNLSKQ+ +VEL+K EILE+ +R  EG  S  G K P
Sbjct: 60  DNLSKQKEEVELKKCEILEDNNRFEEG--SYGGEKHP 94