Miyakogusa Predicted Gene
- Lj0g3v0344449.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0344449.1 Non Characterized Hit- tr|K4B8C7|K4B8C7_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,32.56,0.0000000009,bromo domain,Bromodomain; seg,NULL;
Bromodomain,Bromodomain; no description,Bromodomain,CUFF.23632.1
(308 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr0662s0020.1 | bromodomain protein, putative | LC | scaffold... 128 7e-30
Medtr8g081520.1 | bromodomain protein, putative | LC | chr8:3517... 126 2e-29
Medtr0702s0010.1 | bromodomain protein, putative | LC | scaffold... 124 1e-28
Medtr0702s0020.1 | bromodomain protein, putative | LC | scaffold... 121 8e-28
Medtr7g057480.1 | bromodomain protein, putative | LC | chr7:2069... 117 1e-26
Medtr7g057460.1 | bromodomain protein, putative | LC | chr7:2069... 117 1e-26
Medtr0637s0010.1 | bromodomain protein, putative | LC | scaffold... 117 2e-26
Medtr4g039410.1 | bromodomain protein, putative | LC | chr4:1400... 116 3e-26
Medtr3g028570.1 | hypothetical protein | LC | chr3:9132578-91313... 62 9e-10
Medtr0018s0090.2 | global transcription factor group protein | H... 57 3e-08
Medtr0018s0090.1 | global transcription factor group protein | H... 56 4e-08
Medtr2g018270.1 | global transcription factor group protein | HC... 55 7e-08
Medtr3g075040.2 | global transcription factor group protein | HC... 54 1e-07
Medtr3g075040.1 | global transcription factor group protein | HC... 54 2e-07
Medtr2g091130.2 | transcription factor GTE4-like protein | HC | ... 50 4e-06
Medtr2g091130.1 | transcription factor GTE4-like protein | HC | ... 50 4e-06
Medtr2g091135.1 | transcription factor GTE4-like protein | HC | ... 49 4e-06
Medtr2g091135.2 | transcription factor GTE4-like protein | HC | ... 49 4e-06
>Medtr0662s0020.1 | bromodomain protein, putative | LC |
scaffold0662:2001-2816 | 20130731
Length = 271
Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 86/130 (66%), Gaps = 6/130 (4%)
Query: 179 EESEKKMELYKKMQLWVILKRMMIGRDGWAFKHPLDPFDSESL----LMEKNKKKKPILG 234
EE +K ME YKKMQ WVILK+M+ GRDGWA KHPLD E L +E + K +G
Sbjct: 124 EEHKKPMEHYKKMQCWVILKKMIEGRDGWALKHPLDLKVLEGLSKSNCLENKYELKANMG 183
Query: 235 FVDIESKLKNWLYSEPEQFVDDMRNVFSHALMYPSRSEVHIIGRRLSDNFEHNWTTLKKK 294
DIE+KL YS P++F DD+R VFSH L+Y + +VH +RLSD FE+ W +LK++
Sbjct: 184 LKDIEAKLG--FYSTPDEFADDVRLVFSHGLLYTWKDDVHKAAKRLSDTFENRWKSLKEE 241
Query: 295 WASEDRKQKR 304
W E+R+ KR
Sbjct: 242 WTLEERRVKR 251
>Medtr8g081520.1 | bromodomain protein, putative | LC |
chr8:35172788-35171904 | 20130731
Length = 294
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 86/133 (64%), Gaps = 6/133 (4%)
Query: 179 EESEKKMELYKKMQLWVILKRMMIGRDGWAFKHPLDPFDSESL----LMEKNKKKKPILG 234
EE +K ME YKKMQ WVILK+M+ GRDGWA KHPLD E L +E + K +G
Sbjct: 124 EEHKKPMEHYKKMQCWVILKKMIEGRDGWALKHPLDLKVLEGLSKSNCLENKYELKANMG 183
Query: 235 FVDIESKLKNWLYSEPEQFVDDMRNVFSHALMYPSRSEVHIIGRRLSDNFEHNWTTLKKK 294
DIE+KL YS P++F DD+R VFSH L+Y + +VH +RL D FE+ W +LKK+
Sbjct: 184 LKDIEAKL--GFYSTPDEFADDVRLVFSHGLLYTWKDDVHKTAKRLHDTFENRWESLKKE 241
Query: 295 WASEDRKQKRSKK 307
W E+R+ K+ K
Sbjct: 242 WTLEERRVKKINK 254
>Medtr0702s0010.1 | bromodomain protein, putative | LC |
scaffold0702:2790-2003 | 20130731
Length = 262
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/132 (49%), Positives = 86/132 (65%), Gaps = 6/132 (4%)
Query: 180 ESEKKMELYKKMQLWVILKRMMIGRDGWAFKHPLDPFDSESL----LMEKNKKKKPILGF 235
E++K ME YKKMQ WVILK+M+ GRDGWA KHPLD E L +E + K +G
Sbjct: 128 ENKKPMEHYKKMQCWVILKKMIEGRDGWALKHPLDLKVLEGLSKSNCLENKYELKANMGL 187
Query: 236 VDIESKLKNWLYSEPEQFVDDMRNVFSHALMYPSRSEVHIIGRRLSDNFEHNWTTLKKKW 295
DIE+KL YS P++F DD+R VFSH L+Y + +VH +RL D FE+ W +LKK+W
Sbjct: 188 KDIEAKLG--FYSTPDEFADDVRLVFSHGLLYTWKDDVHKTAKRLHDTFENRWESLKKEW 245
Query: 296 ASEDRKQKRSKK 307
E+R+ K+ K
Sbjct: 246 TLEERRVKKINK 257
>Medtr0702s0020.1 | bromodomain protein, putative | LC |
scaffold0702:5708-5223 | 20130731
Length = 161
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 83/127 (65%), Gaps = 6/127 (4%)
Query: 185 MELYKKMQLWVILKRMMIGRDGWAFKHPLDPFDSESL----LMEKNKKKKPILGFVDIES 240
ME YKKMQ WVILK+M+ GRDGWA KHPLD E L +E + K +G DIE+
Sbjct: 1 MEHYKKMQCWVILKKMIEGRDGWALKHPLDLKVLEGLSKSNCLENKYELKANMGLKDIEA 60
Query: 241 KLKNWLYSEPEQFVDDMRNVFSHALMYPSRSEVHIIGRRLSDNFEHNWTTLKKKWASEDR 300
KL YS P++F DD+R VFSH L+Y + +VH +RLSD FE+ W +LK++W E+R
Sbjct: 61 KLG--FYSTPDEFADDVRLVFSHGLLYTWKDDVHKAAKRLSDTFENRWKSLKEEWTLEER 118
Query: 301 KQKRSKK 307
+ K+ K
Sbjct: 119 RVKKINK 125
>Medtr7g057480.1 | bromodomain protein, putative | LC |
chr7:20698994-20698098 | 20130731
Length = 298
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 82/129 (63%), Gaps = 13/129 (10%)
Query: 178 SEESEKKMELYKKMQLWVILKRMMIGRDGWAFKHPLDPFDSESLLMEKNKKKKP-----I 232
++E + ME YK++Q W I+ RM+ G+DGWA K+PLD L KNK K
Sbjct: 136 NKEKKTPMERYKRLQCWAIVNRMITGKDGWALKNPLD------LKFLKNKSSKTSDKLKA 189
Query: 233 LGFVDIESKLKNWLYSEPEQFVDDMRNVFSHALMYPSRSEVHIIGRRLSDNFEHNWTTLK 292
+G DIE+KLK YS+P++F +DMR VF H +YP R VH I RLSD FE+ W +LK
Sbjct: 190 IGLKDIEAKLK--FYSKPDEFAEDMRFVFYHGWLYPQRDVVHKIAMRLSDIFENKWKSLK 247
Query: 293 KKWASEDRK 301
++WA EDR+
Sbjct: 248 EEWALEDRR 256
>Medtr7g057460.1 | bromodomain protein, putative | LC |
chr7:20693516-20692620 | 20130731
Length = 298
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 82/129 (63%), Gaps = 13/129 (10%)
Query: 178 SEESEKKMELYKKMQLWVILKRMMIGRDGWAFKHPLDPFDSESLLMEKNKKKKP-----I 232
++E + ME YK++Q W I+ RM+ G+DGWA K+PLD L KNK K
Sbjct: 136 NKEKKTPMERYKRLQCWAIVNRMITGKDGWALKNPLD------LKFLKNKSSKTSDKLKA 189
Query: 233 LGFVDIESKLKNWLYSEPEQFVDDMRNVFSHALMYPSRSEVHIIGRRLSDNFEHNWTTLK 292
+G DIE+KLK YS+P++F +DMR VF H +YP R VH I RLSD FE+ W +LK
Sbjct: 190 IGLKDIEAKLK--FYSKPDEFAEDMRFVFYHGWLYPQRDVVHKIAMRLSDIFENKWKSLK 247
Query: 293 KKWASEDRK 301
++WA EDR+
Sbjct: 248 EEWALEDRR 256
>Medtr0637s0010.1 | bromodomain protein, putative | LC |
scaffold0637:6098-2834 | 20130731
Length = 491
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 82/126 (65%), Gaps = 7/126 (5%)
Query: 178 SEESEKKMELYKKMQLWVILKRMMIGRDGWAFKHPLD--PFDSESLLMEKNKKKKPILGF 235
++E + ME YK++Q W I+ RM+ G+DGWA K+PLD ++SL M K +G
Sbjct: 153 NKEKKTPMERYKRLQCWAIVNRMITGKDGWALKNPLDLKCLKNKSLKMSDKLKA---IGL 209
Query: 236 VDIESKLKNWLYSEPEQFVDDMRNVFSHALMYPSRSEVHIIGRRLSDNFEHNWTTLKKKW 295
DIE+KLK YS P++F +DMR VF H +YP R VH I RLSD FE+ W +LK++W
Sbjct: 210 KDIEAKLK--FYSIPDEFAEDMRFVFYHGWLYPQRDVVHKIAMRLSDIFENKWMSLKEEW 267
Query: 296 ASEDRK 301
A EDR+
Sbjct: 268 ALEDRR 273
>Medtr4g039410.1 | bromodomain protein, putative | LC |
chr4:14006780-14007709 | 20130731
Length = 309
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 80/130 (61%), Gaps = 14/130 (10%)
Query: 178 SEESEKKMELYKKMQLWVILKRMMIGRDGWAFKHPLDPFDSESLLMEKNKKKKPI----- 232
++E + ME YK+MQ W I+ RM+ G+DGWA K+PLD L KNK K
Sbjct: 146 NKEKKTLMERYKRMQCWAIVSRMITGKDGWALKNPLD------LKFLKNKSSKTTSDKLK 199
Query: 233 -LGFVDIESKLKNWLYSEPEQFVDDMRNVFSHALMYPSRSEVHIIGRRLSDNFEHNWTTL 291
+G DIE+KL YS P++F +DMR VF H +YP R VH I RLSD FE+ W +L
Sbjct: 200 AIGLKDIEAKLN--FYSSPDEFAEDMRFVFYHGWLYPQRDVVHKIAMRLSDIFENKWKSL 257
Query: 292 KKKWASEDRK 301
K++WA EDR+
Sbjct: 258 KEEWALEDRR 267
>Medtr3g028570.1 | hypothetical protein | LC | chr3:9132578-9131370
| 20130731
Length = 338
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 185 MELYKKMQLWVILKRMMIGRDGWAFKHPLDPFDSESL--LMEKNKKKKPILGFVDIESKL 242
M+ +KK Q +V LKR+M+ DG FK D S+ + + ++ F I+ KL
Sbjct: 61 MDRFKKQQCFVTLKRLMLNLDGKDFK---DAMASKRFARCYSDDISGQALMEFETIKLKL 117
Query: 243 KNWLYSEPEQFVDDMRNVFSHA-LMYPSRSEVHIIGRRLSDNFEHNWTTLKKKWASEDRK 301
+ LY +QF D+R +F +A ++ + ++ I +LS+ FE W +L+++WA+E +
Sbjct: 118 EKGLYLTTDQFASDVRIIFCNANKLHQTSHKIQRIAMKLSELFEMKWKSLEERWAAERQN 177
Query: 302 QK 303
K
Sbjct: 178 NK 179
>Medtr0018s0090.2 | global transcription factor group protein | HC |
scaffold0018:35855-25446 | 20130731
Length = 626
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 196 ILKRMMIGRDGWAFKHPLDPF-----DSESLLMEKNKKKKPILGFVDIESKLKNWLYSEP 250
+LK +M + GW F P+D D S++ + +++K+ Y+ P
Sbjct: 204 LLKLLMKHKFGWVFNAPVDVVKLNIPDYFSVITHP-------MDLGTVQNKIAKGSYTGP 256
Query: 251 EQFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKKWASED 299
+F D+R FS+AL Y P +++VHI+ LS FE W TL+KK D
Sbjct: 257 LEFAADVRLTFSNALSYNPPKTDVHIMADTLSKYFETRWKTLQKKIPRND 306
>Medtr0018s0090.1 | global transcription factor group protein | HC |
scaffold0018:35855-25446 | 20130731
Length = 751
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 196 ILKRMMIGRDGWAFKHPLDPF-----DSESLLMEKNKKKKPILGFVDIESKLKNWLYSEP 250
+LK +M + GW F P+D D S++ + +++K+ Y+ P
Sbjct: 204 LLKLLMKHKFGWVFNAPVDVVKLNIPDYFSVITHP-------MDLGTVQNKIAKGSYTGP 256
Query: 251 EQFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKKWASED 299
+F D+R FS+AL Y P +++VHI+ LS FE W TL+KK D
Sbjct: 257 LEFAADVRLTFSNALSYNPPKTDVHIMADTLSKYFETRWKTLQKKIPRND 306
>Medtr2g018270.1 | global transcription factor group protein | HC |
chr2:5737871-5742759 | 20130731
Length = 520
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 13/133 (9%)
Query: 177 GSEESEKKMELYKKMQLWVILKRMMIGRDGWAFKHPLDPF-----DSESLLMEKNKKKKP 231
G + +K++ + ILK ++ W FK P+DP D +++
Sbjct: 67 GPKNKRQKLDRKGSHKCATILKCLISHPYSWVFKTPVDPVALNIPDYFTVISHP------ 120
Query: 232 ILGFVDIESKLKNWLYSEPEQFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTT 290
+ I+ KL +Y E+F D+R FS+A+ Y P ++VH++ + L+ FE W
Sbjct: 121 -MDLGTIKFKLDKNIYYSKEEFAADVRLTFSNAMTYNPPSNDVHLMAKELNKLFERKWKD 179
Query: 291 LKKKWASEDRKQK 303
+ KKW ED +K
Sbjct: 180 MDKKWNFEDEHEK 192
>Medtr3g075040.2 | global transcription factor group protein | HC |
chr3:34065005-34070501 | 20130731
Length = 626
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 192 QLWVILKRMMIGRDGWAFKHPLDPFDSESLLMEKNKKKKPI-LGFVDIESKLKNWLYSEP 250
Q +L R+M + GW F P+D ++ N K P+ LG V +S++ + YS P
Sbjct: 209 QCENLLNRLMSHQFGWVFNEPVD-VVKLNIPDYFNVIKHPMDLGTV--KSRITSGKYSNP 265
Query: 251 EQFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKKWASEDRK 301
F DD+R F +A+ Y P ++VH I LS FE W +++KK D +
Sbjct: 266 MDFADDVRLTFKNAMTYNPPGNDVHGIALALSKAFEKGWKSIEKKIPVIDHR 317
>Medtr3g075040.1 | global transcription factor group protein | HC |
chr3:34065000-34070501 | 20130731
Length = 779
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 192 QLWVILKRMMIGRDGWAFKHPLDPFDSESLLMEKNKKKKPI-LGFVDIESKLKNWLYSEP 250
Q +L R+M + GW F P+D ++ N K P+ LG V +S++ + YS P
Sbjct: 209 QCENLLNRLMSHQFGWVFNEPVD-VVKLNIPDYFNVIKHPMDLGTV--KSRITSGKYSNP 265
Query: 251 EQFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKKWASEDRK 301
F DD+R F +A+ Y P ++VH I LS FE W +++KK D +
Sbjct: 266 MDFADDVRLTFKNAMTYNPPGNDVHGIALALSKAFEKGWKSIEKKIPVIDHR 317
>Medtr2g091130.2 | transcription factor GTE4-like protein | HC |
chr2:39248514-39253183 | 20130731
Length = 638
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 196 ILKRMMIGRDGWAFKHPLDPFDSESLLMEKN--KKKKPI-LGFVDIESKL-KNWLYSEPE 251
+L+++M + GW F P+D E L + +P+ LG V +S+L KNW Y P+
Sbjct: 303 LLEKLMKHKHGWVFNTPVD---VERLGLHDYFIIISQPMDLGTV--KSRLSKNW-YKSPK 356
Query: 252 QFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKKWASEDR 300
+F +D+R F +A+ Y P +VH++ LS FE W ++ + E R
Sbjct: 357 EFAEDVRLTFHNAMTYNPKGQDVHVMAEELSALFEERWAIIESNYNHEMR 406
>Medtr2g091130.1 | transcription factor GTE4-like protein | HC |
chr2:39248514-39253183 | 20130731
Length = 638
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 196 ILKRMMIGRDGWAFKHPLDPFDSESLLMEKN--KKKKPI-LGFVDIESKL-KNWLYSEPE 251
+L+++M + GW F P+D E L + +P+ LG V +S+L KNW Y P+
Sbjct: 303 LLEKLMKHKHGWVFNTPVD---VERLGLHDYFIIISQPMDLGTV--KSRLSKNW-YKSPK 356
Query: 252 QFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKKWASEDR 300
+F +D+R F +A+ Y P +VH++ LS FE W ++ + E R
Sbjct: 357 EFAEDVRLTFHNAMTYNPKGQDVHVMAEELSALFEERWAIIESNYNHEMR 406
>Medtr2g091135.1 | transcription factor GTE4-like protein | HC |
chr2:39259621-39265818 | 20130731
Length = 648
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 196 ILKRMMIGRDGWAFKHPLDPFDSESLLMEKN--KKKKPI-LGFVDIESKL-KNWLYSEPE 251
+L+++M + GW F P+D E L + +P+ LG V +S+L KNW Y P+
Sbjct: 314 LLEKLMKHKHGWVFNTPVD---VERLGLHDYFIIISQPMDLGTV--KSRLSKNW-YKSPK 367
Query: 252 QFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKKWASEDR 300
+F +D+R F +A+ Y P +VH++ LS FE W ++ + E R
Sbjct: 368 EFAEDVRLTFRNAMTYNPKGQDVHVMAEELSALFEERWAIIESHYNHEMR 417
>Medtr2g091135.2 | transcription factor GTE4-like protein | HC |
chr2:39259544-39265818 | 20130731
Length = 631
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 196 ILKRMMIGRDGWAFKHPLDPFDSESLLMEKN--KKKKPI-LGFVDIESKL-KNWLYSEPE 251
+L+++M + GW F P+D E L + +P+ LG V +S+L KNW Y P+
Sbjct: 314 LLEKLMKHKHGWVFNTPVD---VERLGLHDYFIIISQPMDLGTV--KSRLSKNW-YKSPK 367
Query: 252 QFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKKWASEDR 300
+F +D+R F +A+ Y P +VH++ LS FE W ++ + E R
Sbjct: 368 EFAEDVRLTFRNAMTYNPKGQDVHVMAEELSALFEERWAIIESHYNHEMR 417