Miyakogusa Predicted Gene

Lj0g3v0344389.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0344389.1 Non Characterized Hit- tr|I1NHX8|I1NHX8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.58222 PE,71.82,0,UVRD /
RECB / PCRA DNA HELICASE FAMILY MEMBER,DNA helicase, UvrD/REP type; no
description,NULL; UvrD,CUFF.23643.1
         (1124 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g072800.1 | ATP-dependent DNA helicase REP | HC | chr1:323...  1598   0.0  
Medtr0675s0010.1 | ATP-dependent DNA helicase REP | LC | scaffol...    92   3e-18

>Medtr1g072800.1 | ATP-dependent DNA helicase REP | HC |
            chr1:32322790-32341086 | 20130731
          Length = 1258

 Score = 1598 bits (4137), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 785/1005 (78%), Positives = 869/1005 (86%), Gaps = 6/1005 (0%)

Query: 124  DDFDESILDQIDTLCELKSAEKSAKQQELGLSCDNEVFSESNIXXXXXXXXXXXXXXXXX 183
            DDFDESIL+QID LCE KSA K+A Q  L  SC   V SES +                 
Sbjct: 256  DDFDESILEQIDILCEQKSAVKAAGQG-LDQSCQENVSSESGLVCTVDMSLATSAVSEGI 314

Query: 184  XXXXXLFSSRVGLDRKEEE-QTDSATQSLKNGSMPDEYLKYLQSLNDRQREAACTDISVP 242
                 L    + LD KEE   +++  +SL +G+MP+EY KYL+SLN+RQREAACTD+S P
Sbjct: 315  GSGDMLCFG-IDLDHKEEHVDSETTRKSLPSGTMPEEYSKYLKSLNERQREAACTDVSTP 373

Query: 243  LMIVAGPGSGKTSTMVGRVLMLLNEGISPSNILAMTFTTAAASEMRERIGGIAGKPTAKE 302
            LMIVAGPGSGKTSTMVGRVLMLLNEGISP NILAMTFT AAA+EMR+RIG IAGK TAKE
Sbjct: 374  LMIVAGPGSGKTSTMVGRVLMLLNEGISPLNILAMTFTAAAAAEMRKRIGAIAGKQTAKE 433

Query: 303  LAISTFHSFSLQLCRSYADKLGRTSEFLIYGQGQQRKAVIEAVRLLENGKSKHKDGALLI 362
            L ISTFHSF LQLCRS+A+KLGRTSEFLIYGQ QQR A+IEA RLLEN  SKHK+G LLI
Sbjct: 434  LTISTFHSFCLQLCRSHAEKLGRTSEFLIYGQWQQRNAIIEATRLLENETSKHKNGELLI 493

Query: 363  SENSDMLTGPNQFKDKAKKWLNFVTQAKASGKTSAEYREMGNEIGAEILENYNYILKSCN 422
             E SD L  P QFKDKAKKW NFVTQAKASG+TSAEYR+MGN+IGAEILENY+ ILKSCN
Sbjct: 494  GEASDGLKTPKQFKDKAKKWQNFVTQAKASGRTSAEYRDMGNQIGAEILENYSNILKSCN 553

Query: 423  ALDYHDLISCSVKLLTDFPEVFRECQDSWKAVVIDEFQDTSAMQYRLLSMLASHHKITIV 482
            A+DYHDLIS SVKLLTDFPEVFRE QDSWKAVVIDEFQDTSAMQY+LL +LASH+KITI+
Sbjct: 554  AVDYHDLISYSVKLLTDFPEVFRESQDSWKAVVIDEFQDTSAMQYKLLRILASHNKITII 613

Query: 483  GDDDQSIFSFNGADISGFISFRNDFPNFKEIRLNKNYRSTRYIIEAASSLIQNNAKRCPR 542
            GDDDQSIFSFNGADISGFISFRNDFPN+KEIRLNKNYRSTRYI+EAA+SLIQNNAKRC  
Sbjct: 614  GDDDQSIFSFNGADISGFISFRNDFPNYKEIRLNKNYRSTRYIVEAAASLIQNNAKRCQL 673

Query: 543  KDVLTDNSSGSKIVMKECHHEDAQCAFVVDKILEISSNHSVAKCSYGNIAILYRRQISGK 602
            K+VLTDNSSGSKI+MKECH+EDAQCAF+VDKI EISSNHS   CSYGNIAILYRR++SGK
Sbjct: 674  KNVLTDNSSGSKIIMKECHNEDAQCAFIVDKISEISSNHSADNCSYGNIAILYRRRVSGK 733

Query: 603  AFQMAFRDRKIPFNIHGVAFYRKKVVRTIISMLRTALPDCDDSSYNRVFKALLPLEKDRK 662
            AFQMAFRDRKIPFNIHGVAFYRKKVV+TIISML+TALP CDD SY+RVFKALLP EKD K
Sbjct: 734  AFQMAFRDRKIPFNIHGVAFYRKKVVKTIISMLQTALPGCDDDSYSRVFKALLPFEKDMK 793

Query: 663  KRVIDHINKISTIRKCSFLSAACDIFNAKISGTFKRSELTHGKKVLMTIDIISKLVHREK 722
            KRVIDHI+KISTIRKCSFLSAACDIF+AKISGT+KRS+LTHG+KVL TI+IISKLVHREK
Sbjct: 794  KRVIDHISKISTIRKCSFLSAACDIFSAKISGTYKRSDLTHGRKVLTTIEIISKLVHREK 853

Query: 723  SISAIINCATNMIPEKYLLEQRASVDVDGGRLLNEDYDVRSVLQYLLDDVSEFLSTKFIE 782
            SISAII    NMIPEKYLLEQRA VDVDGG LLNED D+RSVLQYLLDD+SEFLSTKFIE
Sbjct: 854  SISAIITSVANMIPEKYLLEQRAIVDVDGGTLLNEDCDIRSVLQYLLDDISEFLSTKFIE 913

Query: 783  IKGGKDISEDNGCIFVLKAFIDYLFERERENFCARRKDNENSVTLTTIHQAKGLEWDVVF 842
            ++G K++SED GCIF LKAFIDYLFERE+ENF ARRKDNENSVTLTTIHQAKGLEWD+VF
Sbjct: 914  VRGEKEMSEDKGCIFTLKAFIDYLFEREKENFRARRKDNENSVTLTTIHQAKGLEWDIVF 973

Query: 843  IVKANESEIPLLHDFKGTVKESGALVEEERRLLYVAMTRARKQLFILYITMDSNWQVLQP 902
            IVKANESEIPLLHDFKG VK++ A+VEEERRLLYVAMTRAR++LF+LY+ +DSNWQ+LQP
Sbjct: 974  IVKANESEIPLLHDFKGVVKDTAAIVEEERRLLYVAMTRARQKLFMLYVMVDSNWQMLQP 1033

Query: 903  SRFLREIPHHLLEVQGEMTSHEPQIKHGAHQKETTFCSTDLLLKEQTLEADWVPMPNDLD 962
            SRFL+EIPHHLLE QG++   E QIK   HQKETT C+TDLL+K+Q  EAD  P+PN+L 
Sbjct: 1034 SRFLKEIPHHLLEFQGDINMQELQIKREGHQKETTCCTTDLLIKKQQSEADLDPVPNNLL 1093

Query: 963  NNHSHKASDEL---AEATNGSNFLRRFNVEDRSVVSHLFHQWAKKKAFQDPKRLLDKVGF 1019
            NNH  +AS EL   AEA NG++F+RRF+VEDRSVVSH+FH+WAKKKAFQDPKRLLDKVGF
Sbjct: 1094 NNHFSEASSELAEFAEANNGNDFIRRFDVEDRSVVSHIFHKWAKKKAFQDPKRLLDKVGF 1153

Query: 1020 VIDERLRQQXXXXXXXXXXXXSCIRCDEAFQYAQSILRWEQIPADKRAHLMREKQEHFLK 1079
            VIDERLRQ+            S + CDEA QYAQ +LRWEQIPADKRAHLMREKQEHFLK
Sbjct: 1154 VIDERLRQKKNKHKDLLNSLKSSLSCDEAMQYAQYVLRWEQIPADKRAHLMREKQEHFLK 1213

Query: 1080 LRIEKAMGSSTPTDKQISYLKKLGCTATPTSRLHASHLIEQYKSL 1124
            L+IE AMGS+TPTDKQISYLKKLGCT TPTSRLHASHLIEQYKSL
Sbjct: 1214 LKIENAMGSATPTDKQISYLKKLGCTMTPTSRLHASHLIEQYKSL 1258



 Score =  153 bits (387), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 93/176 (52%), Positives = 107/176 (60%), Gaps = 13/176 (7%)

Query: 1   MADQRIGRISAYFSAAKPLLPQKRPPDP-------IKVTGDVDAAV-RVPGAKRVPLAEI 52
           M +Q+ GRISAYFSA+KPLLPQKR  D        IK   DVD A  RV   KRVPLAE+
Sbjct: 1   MQNQQNGRISAYFSASKPLLPQKRASDSSISSPYQIKSLCDVDGAKGRVRVGKRVPLAEV 60

Query: 53  PLNRSHAVVNDDNVASSDATHCXXXXXXXXXXXXXXXXXKENLCQQCFETPRKEPQV--S 110
           PLNR H+  N    ASSD   C                 KENLCQ  FETPRKE     S
Sbjct: 61  PLNRLHSSGNGGE-ASSDVICCSSSARTVVVPAVSAV--KENLCQSNFETPRKESGGFES 117

Query: 111 EPVDYFSATGLFDDDFDESILDQIDTLCELKSAEKSAKQQELGLSCDNEVFSESNI 166
           E +DYF A+GL DDDFD+SIL+QID +CE KSA K+A  + LG SC  +V SE N+
Sbjct: 118 ESLDYFYASGLLDDDFDDSILEQIDIMCEEKSAVKTAGVEGLGHSCHEKVSSEGNV 173


>Medtr0675s0010.1 | ATP-dependent DNA helicase REP | LC |
           scaffold0675:2489-5585 | 20130731
          Length = 970

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 163/371 (43%), Gaps = 68/371 (18%)

Query: 225 QSLNDRQREAACTDISVPLMIVAGPGSGKTSTMVGRVLMLLNEGISPSNILAMTFTTAAA 284
           QSL  R       + +   +++AGPGSGKT+T+  ++   L +      I A+TFT  AA
Sbjct: 356 QSLARRAGAKPVANCNGHCLVIAGPGSGKTNTISRKIAAALQD--PNERIAAVTFTREAA 413

Query: 285 SEMRERIGGIAGKPTAKELAISTFHSFSLQLCRSYADKLGRTSEFLIYGQGQQRKAVIEA 344
            E+R R   +AG+  A  L + TFHS    +        GR    +++G+       I A
Sbjct: 414 LELRARTISLAGRAAAPRLLVGTFHSVMNLMSFPNLAVDGRD---VVFGRD------IIA 464

Query: 345 VRLLENGKSKHKDGALLISEN----------SDMLTGPNQFKDKAKKWLNFVTQAKASGK 394
            R    GK+K K    ++ E           S++     + +D ++     + +   SG+
Sbjct: 465 GRPWPFGKTKWK----IVKEGLRRSFIHRALSELAIEDIKLEDASR-----IIEHVKSGR 515

Query: 395 TSAEYREMGNEIGAEILENYNYILKSCNALDYHDLI--------SCSVKLLTDFPEVFRE 446
            + E R        ++ + Y  I+     +D+ D++        S +V  L D   +F  
Sbjct: 516 PATELRH------EQLTQIYTDIMTRQKVIDFQDILLKTNAGLDSGAVPPL-DVTRLF-- 566

Query: 447 CQDSWKAVVIDEFQDTSAMQYRLLSMLASHHK----ITIVGDDDQSIFSF-NGADISGFI 501
                    IDE+QDT   Q+    M A+H +    +T VGDDDQSI+ F N     G +
Sbjct: 567 ---------IDEYQDTDKPQF---DMAAAHFRANVILTGVGDDDQSIYGFRNALGYEGML 614

Query: 502 SFRNDFPNFKEIRLNKNYRSTRYIIEAASSLIQNNAKRCPRKDVLTDNSSGSKIVMK--E 559
            F   F + + + L  NYRS   I+ AA+ +I +N  R   K ++    +G K   K  +
Sbjct: 615 LFERSF-DAERLMLGNNYRSHAEIVGAATKVINHNLDRVD-KTLVAIKGAGGKTAWKTFK 672

Query: 560 CHHEDAQCAFV 570
              E+A  A V
Sbjct: 673 TREEEAHAAAV 683



 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 54/96 (56%), Gaps = 19/96 (19%)

Query: 816 ARRKDNENS---VTLTTIHQAKGLEWDVVFIVKANESEIPLLHDFKGTVKESGALVEEER 872
           A++++ E++   V L T H +KGLE+D V+IV A +   P          + G L EEER
Sbjct: 882 AKKEEGEDAPKVVELMTAHGSKGLEFDFVWIVGAEDEVFP---------AKDGTL-EEER 931

Query: 873 RLLYVAMTRARKQLFILYITMDSNWQVLQPSRFLRE 908
           RL++VAMTRARK L +      S      PS FL+E
Sbjct: 932 RLMFVAMTRARKDLML------STGGGKPPSGFLKE 961