Miyakogusa Predicted Gene

Lj0g3v0343839.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0343839.1 Non Characterized Hit- tr|I1LYP3|I1LYP3_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,73.38,0,seg,NULL;
AUX_IAA,AUX/IAA protein; CAD & PB1 domains,NULL; FAMILY NOT
NAMED,NULL; IAA_ARF,Aux/IAA-AR,CUFF.23587.1
         (276 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g069495.1 | auxin response factor | HC | chr1:30104004-300...   370   e-102
Medtr1g093240.1 | auxin-responsive AUX/IAA family protein | HC |...   133   2e-31
Medtr1g070520.1 | auxin-responsive AUX/IAA family protein | HC |...   130   1e-30
Medtr6g488150.1 | auxin response factor | HC | chr6:33216291-332...   129   3e-30
Medtr5g030710.2 | auxin-responsive AUX/IAA family protein | HC |...   128   5e-30
Medtr5g030710.1 | auxin-responsive AUX/IAA family protein | HC |...   128   5e-30
Medtr5g067350.1 | auxin response factor | HC | chr5:28450190-284...   126   2e-29
Medtr8g103030.1 | auxin-responsive AUX/IAA family protein | HC |...   126   3e-29
Medtr1g093240.2 | auxin-responsive AUX/IAA family protein | HC |...   124   8e-29
Medtr1g080860.1 | auxin-responsive AUX/IAA family protein | HC |...   122   3e-28
Medtr8g067530.1 | auxin-responsive AUX/IAA family protein | HC |...   122   5e-28
Medtr2g101500.1 | auxin-responsive AUX/IAA family protein | HC |...   120   2e-27
Medtr2g100780.1 | auxin-responsive AUX/IAA family protein | HC |...   117   1e-26
Medtr2g100780.4 | auxin-responsive AUX/IAA family protein | HC |...   117   1e-26
Medtr2g100780.2 | auxin-responsive AUX/IAA family protein | HC |...   117   1e-26
Medtr2g100780.3 | auxin-responsive AUX/IAA family protein | HC |...   117   2e-26
Medtr1g080860.2 | auxin-responsive AUX/IAA family protein | HC |...   114   1e-25
Medtr7g096090.1 | auxin-responsive AUX/IAA family protein | HC |...   112   3e-25
Medtr1g070830.1 | auxin-responsive AUX/IAA family protein | HC |...   104   1e-22
Medtr8g014520.1 | auxin response factor | HC | chr8:4572622-4568...   102   3e-22
Medtr8g014520.2 | auxin response factor | HC | chr8:4572622-4568...   102   3e-22
Medtr1g093240.3 | auxin-responsive AUX/IAA family protein | HC |...    97   2e-20
Medtr4g124300.1 | auxin-responsive AUX/IAA family protein | HC |...    93   3e-19
Medtr1g040675.1 | auxin response factor | HC | chr1:15063378-150...    92   4e-19
Medtr1g076270.1 | auxin response factor | HC | chr1:33944737-339...    92   7e-19
Medtr1g093350.1 | auxin response factor | HC | chr1:33849453-338...    92   7e-19
Medtr1g085750.1 | auxin-responsive AUX/IAA family protein | HC |...    90   2e-18
Medtr7g110790.1 | auxin-responsive AUX/IAA family protein | HC |...    89   6e-18
Medtr2g102490.1 | auxin-responsive AUX/IAA family protein | HC |...    84   1e-16
Medtr3g106850.1 | auxin-responsive AUX/IAA family protein | HC |...    81   9e-16
Medtr4g011880.1 | auxin-responsive AUX/IAA family protein | HC |...    79   5e-15
Medtr1g109510.1 | auxin-responsive AUX/IAA family protein | HC |...    76   3e-14
Medtr1g085750.2 | auxin-responsive AUX/IAA family protein | HC |...    74   1e-13
Medtr1g040675.2 | auxin response factor | HC | chr1:15063472-150...    68   9e-12
Medtr2g005240.1 | auxin response factor 2 | HC | chr2:92911-1033...    66   4e-11
Medtr4g128070.1 | auxin-responsive AUX/IAA family protein | HC |...    60   2e-09
Medtr7g062540.1 | auxin response factor 2 | HC | chr7:22756278-2...    59   5e-09
Medtr8g100050.1 | auxin response factor 2 | HC | chr8:40230869-4...    58   9e-09
Medtr4g021580.1 | auxin response factor 2 | HC | chr4:7078271-70...    55   6e-08
Medtr8g027440.1 | auxin response factor 2 | HC | chr8:9733998-97...    55   7e-08
Medtr1g024025.1 | auxin response factor 2 | LC | chr1:7778460-77...    54   2e-07
Medtr6g488150.2 | auxin response factor | HC | chr6:33216341-332...    53   3e-07

>Medtr1g069495.1 | auxin response factor | HC |
           chr1:30104004-30099851 | 20130731
          Length = 272

 Score =  370 bits (949), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/244 (75%), Positives = 203/244 (83%), Gaps = 8/244 (3%)

Query: 35  HHAKSH--HQHAPYARIFTAKDFXXXXXXXXXXNVAAGTKRAAESLVATNRPSQVVGWPP 92
           H AKSH  H H  YARIFTAKDF            +AGTKR A+SL ATNRPSQVVGWPP
Sbjct: 35  HPAKSHNYHHHGSYARIFTAKDFSSSSPS------SAGTKRPADSLDATNRPSQVVGWPP 88

Query: 93  LPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINIKDKRHIRSSPFI 152
           L + R+NSFN+ AKSTE F+ VAEKSK+NN VVRK  +NGND++ INIK+KR++R SPF+
Sbjct: 89  LRSYRVNSFNANAKSTEAFNSVAEKSKNNNIVVRKSTDNGNDDNHINIKEKRNLRKSPFV 148

Query: 153 KVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGIIFGGERHSK 212
           KVNMDG PIGRKVDLSAHSSYETLA+TLEDMF+EST S+T KGSNG+D  +   GERHS 
Sbjct: 149 KVNMDGIPIGRKVDLSAHSSYETLAQTLEDMFDESTTSVTSKGSNGEDHNMTTRGERHSI 208

Query: 213 LLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGLAPRLEEKNSRQK 272
           LLDGSSKFVLTYEDKEGDWMLVGDVPWGMF  SVRRLRIMRTSEANGLAPRLEEKNSRQK
Sbjct: 209 LLDGSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGLAPRLEEKNSRQK 268

Query: 273 SKPI 276
           SKPI
Sbjct: 269 SKPI 272


>Medtr1g093240.1 | auxin-responsive AUX/IAA family protein | HC |
           chr1:33903552-33900363 | 20130731
          Length = 236

 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/185 (43%), Positives = 105/185 (56%), Gaps = 37/185 (20%)

Query: 85  SQVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINIKDKR 144
           +QVVGWPP+ + R N    +  +TE      EK+ SN T                     
Sbjct: 82  AQVVGWPPVRSYRKNMMAQKVNNTED----TEKTTSNTT--------------------- 116

Query: 145 HIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGII 204
              ++ F+KV+MDG P  RKVDL+ + +Y+ L++ L  MF+  T      G+ G    I 
Sbjct: 117 ---AAAFVKVSMDGAPYLRKVDLTMYKTYKDLSDALAKMFSSFTT-----GNYGAQGMID 168

Query: 205 FGGERHSKLLD--GSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGLAP 262
           F  E  SKL+D   SS++V TYEDK+GDWMLVGDVPW MF GS +RLRIM+ SEA GLAP
Sbjct: 169 FMNE--SKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAP 226

Query: 263 RLEEK 267
           R  EK
Sbjct: 227 RAMEK 231


>Medtr1g070520.1 | auxin-responsive AUX/IAA family protein | HC |
           chr1:31340838-31337022 | 20130731
          Length = 245

 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/185 (42%), Positives = 99/185 (53%), Gaps = 34/185 (18%)

Query: 85  SQVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINIKDKR 144
           +QVVGWPP+ + R N F +Q              KSN        +N N+N +       
Sbjct: 88  AQVVGWPPVRSFRKNMFAAQ--------------KSNEGSEESEKKNSNNNPI------- 126

Query: 145 HIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGII 204
                 F+KV+MDG P  RKVDL  + SY  L++ L  MFN  T        N + +GI 
Sbjct: 127 -----SFVKVSMDGAPYLRKVDLKMYKSYPELSDALAKMFNSFTTG------NCESQGIK 175

Query: 205 FGGERHSKLLD--GSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGLAP 262
                 +KL+D   SS +V TYEDK+GDWMLVGDVPW MF  S +RLRIM+  EA GLAP
Sbjct: 176 DFMNESNKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKGKEAIGLAP 235

Query: 263 RLEEK 267
           R  EK
Sbjct: 236 RAMEK 240


>Medtr6g488150.1 | auxin response factor | HC |
           chr6:33216291-33219398 | 20130731
          Length = 254

 Score =  129 bits (324), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/187 (42%), Positives = 102/187 (54%), Gaps = 43/187 (22%)

Query: 86  QVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINIKDKRH 145
           QVVGWPP+ + R NS  +Q++                          NDN  +  K    
Sbjct: 101 QVVGWPPIRSFRKNSMATQSQK-------------------------NDNDDVEAKS--- 132

Query: 146 IRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGIIF 205
                ++KV+MDG P  RKVDL    +Y+ L+  LE MF  S  +I+  GS+G     +F
Sbjct: 133 --GCLYVKVSMDGAPYLRKVDLKIFGTYKELSSALEKMF--SCFTISQFGSHG-----VF 183

Query: 206 GG-----ERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGL 260
           G       R   LL GS ++VLTYEDK+GDWMLVGDVPW MF  S +RLRIM++SEA GL
Sbjct: 184 GQGNVCESRLMDLLHGS-EYVLTYEDKDGDWMLVGDVPWKMFIDSCKRLRIMKSSEAIGL 242

Query: 261 APRLEEK 267
           APR  EK
Sbjct: 243 APRAMEK 249


>Medtr5g030710.2 | auxin-responsive AUX/IAA family protein | HC |
           chr5:13126019-13120497 | 20130731
          Length = 335

 Score =  128 bits (322), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 83/203 (40%), Positives = 112/203 (55%), Gaps = 35/203 (17%)

Query: 69  AGTKRAAESLVATNRPS---QVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVV 125
           AG   A  + VA   P+   QVVGWPP+ + R NS             +A  SK+NN  V
Sbjct: 161 AGHNHAGAASVAGCAPASKAQVVGWPPIRSFRKNS-------------MATASKNNNDEV 207

Query: 126 RKGAENGNDNSVINIKDKRHIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFN 185
                           D +   ++ F+KV+MDG P  RKVDL  +++Y+ L+  LE MF 
Sbjct: 208 ----------------DGKPGPAALFVKVSMDGAPYLRKVDLRTYATYQQLSSALEKMF- 250

Query: 186 ESTASITCKGSNGDDRGIIFGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGS 245
            S  ++   GS+G     +    +   LL GS ++VLTYEDK+GDWMLVGDVPW MF  +
Sbjct: 251 -SCFTLGQCGSHGAPGKEMMSESKLRDLLHGS-EYVLTYEDKDGDWMLVGDVPWEMFIDT 308

Query: 246 VRRLRIMRTSEANGLAPRLEEKN 268
            RRL+IM+ S+A GLAPR  EK+
Sbjct: 309 CRRLKIMKGSDAIGLAPRAMEKS 331


>Medtr5g030710.1 | auxin-responsive AUX/IAA family protein | HC |
           chr5:13126144-13120365 | 20130731
          Length = 335

 Score =  128 bits (322), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 83/203 (40%), Positives = 112/203 (55%), Gaps = 35/203 (17%)

Query: 69  AGTKRAAESLVATNRPS---QVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVV 125
           AG   A  + VA   P+   QVVGWPP+ + R NS             +A  SK+NN  V
Sbjct: 161 AGHNHAGAASVAGCAPASKAQVVGWPPIRSFRKNS-------------MATASKNNNDEV 207

Query: 126 RKGAENGNDNSVINIKDKRHIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFN 185
                           D +   ++ F+KV+MDG P  RKVDL  +++Y+ L+  LE MF 
Sbjct: 208 ----------------DGKPGPAALFVKVSMDGAPYLRKVDLRTYATYQQLSSALEKMF- 250

Query: 186 ESTASITCKGSNGDDRGIIFGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGS 245
            S  ++   GS+G     +    +   LL GS ++VLTYEDK+GDWMLVGDVPW MF  +
Sbjct: 251 -SCFTLGQCGSHGAPGKEMMSESKLRDLLHGS-EYVLTYEDKDGDWMLVGDVPWEMFIDT 308

Query: 246 VRRLRIMRTSEANGLAPRLEEKN 268
            RRL+IM+ S+A GLAPR  EK+
Sbjct: 309 CRRLKIMKGSDAIGLAPRAMEKS 331


>Medtr5g067350.1 | auxin response factor | HC |
           chr5:28450190-28454050 | 20130731
          Length = 347

 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/184 (41%), Positives = 106/184 (57%), Gaps = 35/184 (19%)

Query: 85  SQVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINIKDKR 144
           +QVVGWPP+ + R NS  + +K+TE  D                 + G+  +V       
Sbjct: 195 AQVVGWPPIRSFRKNSLTTASKNTEEVD----------------GKLGSGGAV------- 231

Query: 145 HIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGII 204
                 F+KV+MDG P  RKVDL  +++Y  L+ +LE MF  S  +I    S+G+    +
Sbjct: 232 ------FVKVSMDGAPYLRKVDLKNYTAYSELSSSLEKMF--SCFTIGQCESHGNQ---M 280

Query: 205 FGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGLAPRL 264
               +   LL GS ++V+TYEDK+GDWMLVGDVPW MF  + RRLRIM++S+A GLAPR 
Sbjct: 281 LNETKLRDLLHGS-EYVITYEDKDGDWMLVGDVPWEMFIDTCRRLRIMKSSDAIGLAPRA 339

Query: 265 EEKN 268
            EK+
Sbjct: 340 VEKS 343


>Medtr8g103030.1 | auxin-responsive AUX/IAA family protein | HC |
           chr8:43394828-43391289 | 20130731
          Length = 293

 Score =  126 bits (316), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/189 (40%), Positives = 100/189 (52%), Gaps = 45/189 (23%)

Query: 85  SQVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINIKDKR 144
           +QVVGWPP+ + R NS  SQ +                                N  D  
Sbjct: 139 AQVVGWPPIRSFRKNSMVSQPQK-------------------------------NDADAE 167

Query: 145 HIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTAS------ITCKGSNG 198
                 ++KV+M+G P  RKVDL+  SSY  L+  LE MF+  T S      ++C+  N 
Sbjct: 168 AKSECLYVKVSMEGAPYLRKVDLNGFSSYRELSSALEKMFSCFTISQCGSYGVSCREKNL 227

Query: 199 DDRGIIFGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEAN 258
            +  ++        LL GS ++VLTYEDK+GDWMLVGDVPW MFT S +RLRIM++SEA 
Sbjct: 228 SESRLV-------DLLHGS-EYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAI 279

Query: 259 GLAPRLEEK 267
           GLAPR  EK
Sbjct: 280 GLAPRAMEK 288


>Medtr1g093240.2 | auxin-responsive AUX/IAA family protein | HC |
           chr1:33903552-33900946 | 20130731
          Length = 239

 Score =  124 bits (312), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 77/182 (42%), Positives = 101/182 (55%), Gaps = 37/182 (20%)

Query: 85  SQVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINIKDKR 144
           +QVVGWPP+ + R N    +  +TE      EK+ SN T                     
Sbjct: 82  AQVVGWPPVRSYRKNMMAQKVNNTED----TEKTTSNTT--------------------- 116

Query: 145 HIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGII 204
              ++ F+KV+MDG P  RKVDL+ + +Y+ L++ L  MF+  T      G+ G    I 
Sbjct: 117 ---AAAFVKVSMDGAPYLRKVDLTMYKTYKDLSDALAKMFSSFTT-----GNYGAQGMID 168

Query: 205 FGGERHSKLLD--GSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGLAP 262
           F  E  SKL+D   SS++V TYEDK+GDWMLVGDVPW MF GS +RLRIM+ SEA GL  
Sbjct: 169 FMNE--SKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLGM 226

Query: 263 RL 264
            L
Sbjct: 227 HL 228


>Medtr1g080860.1 | auxin-responsive AUX/IAA family protein | HC |
           chr1:35977175-35973245 | 20130731
          Length = 253

 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/185 (42%), Positives = 98/185 (52%), Gaps = 34/185 (18%)

Query: 85  SQVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINIKDKR 144
           +QVVGWPP+ + R N  N   KS            ++ T V K    G  N         
Sbjct: 96  AQVVGWPPVRSFRKNIVNVHQKS------------NSETEVDKSISGGGGNGA------- 136

Query: 145 HIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGII 204
                 F+KV+MDG P  RKVDL  + SY+ L++ L  MF  S+ +I   GS      + 
Sbjct: 137 ------FVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMF--SSFTIDNCGSQ-----VT 183

Query: 205 FGGERHSKLLD--GSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGLAP 262
                 SKL+D    S +V TYEDK+GDWMLVGDVPW MF  S +RLRIM+ SEA GLAP
Sbjct: 184 KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVQSCKRLRIMKGSEAIGLAP 243

Query: 263 RLEEK 267
           R  EK
Sbjct: 244 RAVEK 248


>Medtr8g067530.1 | auxin-responsive AUX/IAA family protein | HC |
           chr8:28204029-28199991 | 20130731
          Length = 356

 Score =  122 bits (305), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/184 (39%), Positives = 104/184 (56%), Gaps = 33/184 (17%)

Query: 85  SQVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINIKDKR 144
           +QVVGWPP+ + R NS             +A  SK+N+ V                 D +
Sbjct: 202 AQVVGWPPIRSFRKNS-------------LATTSKNNDEV-----------------DGK 231

Query: 145 HIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGII 204
              ++ F+KV+MDG P  RKVDL  +++Y+ L+  LE MF  S  ++   GS+G     +
Sbjct: 232 PGAAALFVKVSMDGAPYLRKVDLRNYTTYQELSSDLEKMF--SCFTLGQCGSHGGPGKEM 289

Query: 205 FGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGLAPRL 264
               +    L GS ++V+TYEDK+GDWMLVGDVPW MF  + +RL+IM+ S+A GLAPR 
Sbjct: 290 LSESKLKDFLHGS-EYVVTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMKGSDAIGLAPRA 348

Query: 265 EEKN 268
            EK+
Sbjct: 349 MEKS 352


>Medtr2g101500.1 | auxin-responsive AUX/IAA family protein | HC |
           chr2:43637105-43634220 | 20130731
          Length = 326

 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/197 (39%), Positives = 97/197 (49%), Gaps = 52/197 (26%)

Query: 85  SQVVGWPPLPACRMNSF-------NSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSV 137
           +QVVGWPP+ + R N+        N +A+    FD +                       
Sbjct: 171 AQVVGWPPIRSFRKNTMASNLTKNNDEAEGKPEFDCL----------------------- 207

Query: 138 INIKDKRHIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNEST-ASITCKGS 196
                        ++KV+MDG P  RKVDL  +++Y  L+  LE MF   T       G 
Sbjct: 208 -------------YVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFTCFTIGQCNSPGL 254

Query: 197 NGDDRGIIFGGERHSKLLD--GSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRT 254
            G D      G   S L D    S++VLTYEDK+GDWMLVGDVPWGMF  S RRLRIM+ 
Sbjct: 255 PGKD------GLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWGMFADSCRRLRIMKG 308

Query: 255 SEANGLAPRLEEKNSRQ 271
           S+A GLAPR  EK+  Q
Sbjct: 309 SDAIGLAPRAMEKSRSQ 325


>Medtr2g100780.1 | auxin-responsive AUX/IAA family protein | HC |
           chr2:43340473-43336605 | 20130731
          Length = 269

 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 97/179 (54%), Gaps = 24/179 (13%)

Query: 84  PSQVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINIKDK 143
           P  VVGWPP+ + R N   S +      +   ++   NN    K   + N    +     
Sbjct: 94  PGPVVGWPPIRSFRKNLATSSSSKPSPPESQTQQDMHNNVSAGKKPIDNNYGKGL----- 148

Query: 144 RHIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMF----NESTASITCKGSNG- 198
                  F+K+NMDG PIGRKVDL+A+ SY+ L+  ++D+F         S  C G+N  
Sbjct: 149 -------FVKINMDGVPIGRKVDLNAYHSYDNLSSAVDDLFRGLLKAQRDSSACGGNNKK 201

Query: 199 -DDRGIIFGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSE 256
            ++  +I G      LLDGS ++ L YED EGD MLVGDVPW MF  +V+RLR+++++E
Sbjct: 202 EEEEKVITG------LLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSTE 254


>Medtr2g100780.4 | auxin-responsive AUX/IAA family protein | HC |
           chr2:43340807-43336605 | 20130731
          Length = 269

 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 97/179 (54%), Gaps = 24/179 (13%)

Query: 84  PSQVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINIKDK 143
           P  VVGWPP+ + R N   S +      +   ++   NN    K   + N    +     
Sbjct: 94  PGPVVGWPPIRSFRKNLATSSSSKPSPPESQTQQDMHNNVSAGKKPIDNNYGKGL----- 148

Query: 144 RHIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMF----NESTASITCKGSNG- 198
                  F+K+NMDG PIGRKVDL+A+ SY+ L+  ++D+F         S  C G+N  
Sbjct: 149 -------FVKINMDGVPIGRKVDLNAYHSYDNLSSAVDDLFRGLLKAQRDSSACGGNNKK 201

Query: 199 -DDRGIIFGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSE 256
            ++  +I G      LLDGS ++ L YED EGD MLVGDVPW MF  +V+RLR+++++E
Sbjct: 202 EEEEKVITG------LLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSTE 254


>Medtr2g100780.2 | auxin-responsive AUX/IAA family protein | HC |
           chr2:43340473-43336605 | 20130731
          Length = 269

 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 97/179 (54%), Gaps = 24/179 (13%)

Query: 84  PSQVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINIKDK 143
           P  VVGWPP+ + R N   S +      +   ++   NN    K   + N    +     
Sbjct: 94  PGPVVGWPPIRSFRKNLATSSSSKPSPPESQTQQDMHNNVSAGKKPIDNNYGKGL----- 148

Query: 144 RHIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMF----NESTASITCKGSNG- 198
                  F+K+NMDG PIGRKVDL+A+ SY+ L+  ++D+F         S  C G+N  
Sbjct: 149 -------FVKINMDGVPIGRKVDLNAYHSYDNLSSAVDDLFRGLLKAQRDSSACGGNNKK 201

Query: 199 -DDRGIIFGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSE 256
            ++  +I G      LLDGS ++ L YED EGD MLVGDVPW MF  +V+RLR+++++E
Sbjct: 202 EEEEKVITG------LLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSTE 254


>Medtr2g100780.3 | auxin-responsive AUX/IAA family protein | HC |
           chr2:43340462-43336605 | 20130731
          Length = 268

 Score =  117 bits (292), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 97/179 (54%), Gaps = 24/179 (13%)

Query: 84  PSQVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINIKDK 143
           P  VVGWPP+ + R N   S +      +   ++   NN    K   + N    +     
Sbjct: 94  PGPVVGWPPIRSFRKNLATSSSSKPSPPESQTQQDMHNNVSAGKKPIDNNYGKGL----- 148

Query: 144 RHIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMF----NESTASITCKGSNG- 198
                  F+K+NMDG PIGRKVDL+A+ SY+ L+  ++D+F         S  C G+N  
Sbjct: 149 -------FVKINMDGVPIGRKVDLNAYHSYDNLSSAVDDLFRGLLKAQRDSSACGGNNKK 201

Query: 199 -DDRGIIFGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSE 256
            ++  +I G      LLDGS ++ L YED EGD MLVGDVPW MF  +V+RLR+++++E
Sbjct: 202 EEEEKVITG------LLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSTE 254


>Medtr1g080860.2 | auxin-responsive AUX/IAA family protein | HC |
           chr1:35977175-35973245 | 20130731
          Length = 243

 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/179 (41%), Positives = 93/179 (51%), Gaps = 34/179 (18%)

Query: 85  SQVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINIKDKR 144
           +QVVGWPP+ + R N  N   KS            ++ T V K    G  N         
Sbjct: 96  AQVVGWPPVRSFRKNIVNVHQKS------------NSETEVDKSISGGGGNGA------- 136

Query: 145 HIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGII 204
                 F+KV+MDG P  RKVDL  + SY+ L++ L  MF  S+ +I   GS      + 
Sbjct: 137 ------FVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMF--SSFTIDNCGSQ-----VT 183

Query: 205 FGGERHSKLLD--GSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGLA 261
                 SKL+D    S +V TYEDK+GDWMLVGDVPW MF  S +RLRIM+ SEA GL 
Sbjct: 184 KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVQSCKRLRIMKGSEAIGLG 242


>Medtr7g096090.1 | auxin-responsive AUX/IAA family protein | HC |
           chr7:38527122-38532646 | 20130731
          Length = 250

 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/185 (38%), Positives = 94/185 (50%), Gaps = 39/185 (21%)

Query: 85  SQVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINIKDKR 144
           +QVVGWPP+ + R N    Q   +E                                   
Sbjct: 98  AQVVGWPPVRSYRKNMLAMQKSESEK------------------------------NSSS 127

Query: 145 HIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGII 204
           +  +  F+KV+MDG P  RKVDL  ++SY  L+++L  MF+  T    C+     D    
Sbjct: 128 NFNAITFVKVSMDGAPYLRKVDLKMYTSYSQLSDSLGKMFSSFTIG-NCESQGMKD---- 182

Query: 205 FGGERHSKLLD--GSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGLAP 262
           F  E  SKL+D   +S +V TYEDK+GDWMLVGDVPW MF  S +RLRIM+  EA G+AP
Sbjct: 183 FMNE--SKLMDLLNNSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGIAP 240

Query: 263 RLEEK 267
           R  EK
Sbjct: 241 RAMEK 245


>Medtr1g070830.1 | auxin-responsive AUX/IAA family protein | HC |
           chr1:31369872-31371491 | 20130731
          Length = 204

 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 83/178 (46%), Gaps = 59/178 (33%)

Query: 85  SQVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINIKDKR 144
           +QVVGWPP+ + R NS                         +KG E G            
Sbjct: 83  AQVVGWPPIRSYRKNSLQQ----------------------KKGEEVGM----------- 109

Query: 145 HIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCK-GSNGDDRGI 203
                 ++KV+M G P  RK+DL  + SY  L + LE+MF  +    + + G NG     
Sbjct: 110 ------YLKVSMAGAPYLRKIDLKVYKSYSELLKVLENMFKCTIGEYSEREGYNG----- 158

Query: 204 IFGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGLA 261
                         S+FV TYEDK+GDWMLVGDVPW MF  S +RLRIM+ SEA GL 
Sbjct: 159 --------------SEFVPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSEAKGLG 202


>Medtr8g014520.1 | auxin response factor | HC | chr8:4572622-4568904
           | 20130731
          Length = 271

 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 92/184 (50%), Gaps = 35/184 (19%)

Query: 82  NRPSQVVGWPPLPACRMN--SFNSQAKSTEVFDPVAEKS--KSNNTVVRKGAENGNDNSV 137
           N  S VVGWPP+ + R N  S +S    TE    V +K    SN  +   G         
Sbjct: 103 NAASPVVGWPPIRSFRKNIASGSSSKPPTESRPMVQDKVIVDSNKPISNSGK-------- 154

Query: 138 INIKDKRHIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITC---- 193
                        F+K+NMDG PIGRK+D++A+ SYE L+  ++D+F      I      
Sbjct: 155 -----------GLFVKINMDGVPIGRKIDINAYDSYEKLSSAVDDLFRGLLEEINLSHGI 203

Query: 194 -KGSNGDDRGIIFGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIM 252
            K    +D G+          L GS ++ L YED EGD MLVGDVPW MF  +V+RLR+ 
Sbjct: 204 NKKQEEEDTGM-------KGSLTGSGEYTLVYEDNEGDKMLVGDVPWHMFVSTVKRLRVS 256

Query: 253 RTSE 256
           ++S+
Sbjct: 257 KSSD 260


>Medtr8g014520.2 | auxin response factor | HC | chr8:4572622-4568904
           | 20130731
          Length = 268

 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 92/184 (50%), Gaps = 35/184 (19%)

Query: 82  NRPSQVVGWPPLPACRMN--SFNSQAKSTEVFDPVAEKS--KSNNTVVRKGAENGNDNSV 137
           N  S VVGWPP+ + R N  S +S    TE    V +K    SN  +   G         
Sbjct: 103 NAASPVVGWPPIRSFRKNIASGSSSKPPTESRPMVQDKVIVDSNKPISNSGK-------- 154

Query: 138 INIKDKRHIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITC---- 193
                        F+K+NMDG PIGRK+D++A+ SYE L+  ++D+F      I      
Sbjct: 155 -----------GLFVKINMDGVPIGRKIDINAYDSYEKLSSAVDDLFRGLLEEINLSHGI 203

Query: 194 -KGSNGDDRGIIFGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIM 252
            K    +D G+          L GS ++ L YED EGD MLVGDVPW MF  +V+RLR+ 
Sbjct: 204 NKKQEEEDTGM-------KGSLTGSGEYTLVYEDNEGDKMLVGDVPWHMFVSTVKRLRVS 256

Query: 253 RTSE 256
           ++S+
Sbjct: 257 KSSD 260


>Medtr1g093240.3 | auxin-responsive AUX/IAA family protein | HC |
           chr1:33903407-33900363 | 20130731
          Length = 204

 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 84/157 (53%), Gaps = 37/157 (23%)

Query: 85  SQVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINIKDKR 144
           +QVVGWPP+ + R N    +  +TE      EK+ SN T                     
Sbjct: 82  AQVVGWPPVRSYRKNMMAQKVNNTED----TEKTTSNTT--------------------- 116

Query: 145 HIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGII 204
              ++ F+KV+MDG P  RKVDL+ + +Y+ L++ L  MF+  T      G+ G    I 
Sbjct: 117 ---AAAFVKVSMDGAPYLRKVDLTMYKTYKDLSDALAKMFSSFTT-----GNYGAQGMID 168

Query: 205 FGGERHSKLLD--GSSKFVLTYEDKEGDWMLVGDVPW 239
           F  E  SKL+D   SS++V TYEDK+GDWMLVGDVPW
Sbjct: 169 FMNE--SKLMDLLNSSEYVPTYEDKDGDWMLVGDVPW 203


>Medtr4g124300.1 | auxin-responsive AUX/IAA family protein | HC |
           chr4:51327848-51326632 | 20130731
          Length = 184

 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 62/107 (57%), Gaps = 18/107 (16%)

Query: 147 RSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGIIFG 206
           R S F+KV M+G PIGRK++L  H SY+ L + L  MF     +I C  S          
Sbjct: 92  RPSLFVKVYMEGIPIGRKLNLLEHHSYDGLIKALCHMFR---TTILCPNSQP-------- 140

Query: 207 GERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMR 253
                  L+  +  VLTYED+EGDWM+VGDVPW MF  SV+RL+I R
Sbjct: 141 -------LNSWNFHVLTYEDQEGDWMMVGDVPWEMFLSSVKRLKITR 180


>Medtr1g040675.1 | auxin response factor | HC |
           chr1:15063378-15065770 | 20130731
          Length = 186

 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 61/111 (54%), Gaps = 18/111 (16%)

Query: 151 FIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGIIFGGERH 210
           ++KV+MDG P  RK+DL  +  Y  L + LE MF  +                   GE  
Sbjct: 91  YVKVSMDGAPYLRKIDLRIYGGYPELLKALETMFKLTI------------------GEYS 132

Query: 211 SKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGLA 261
            +     S++  TYEDK+GDWMLVGDVPW MF  S +RLRIM+ +EA GL 
Sbjct: 133 EREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGTEARGLG 183


>Medtr1g076270.1 | auxin response factor | HC |
           chr1:33944737-33945503 | 20130731
          Length = 178

 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 82/177 (46%), Gaps = 61/177 (34%)

Query: 85  SQVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINIKDKR 144
           +++VGWPP+ + R NS   +A+++ ++                                 
Sbjct: 62  AKIVGWPPIRSYRKNSLQ-EAEASGIY--------------------------------- 87

Query: 145 HIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCK-GSNGDDRGI 203
                  +KV++DG P  RK+DL  +  Y  L + LE MF  +  + + K G  G     
Sbjct: 88  -------VKVSLDGAPYLRKIDLRVYGGYAQLLKALESMFKLTIGNYSEKEGYKG----- 135

Query: 204 IFGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGL 260
                         S++  TYEDK+GDWMLVGDVPW MF  S +RLRIM+ +EA G+
Sbjct: 136 --------------SEYEPTYEDKDGDWMLVGDVPWEMFVTSCKRLRIMKGTEARGV 178


>Medtr1g093350.1 | auxin response factor | HC |
           chr1:33849453-33847986 | 20130731
          Length = 178

 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 82/177 (46%), Gaps = 61/177 (34%)

Query: 85  SQVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINIKDKR 144
           +++VGWPP+ + R NS   +A+++ ++                                 
Sbjct: 62  AKIVGWPPIRSYRKNSLQ-EAEASGIY--------------------------------- 87

Query: 145 HIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCK-GSNGDDRGI 203
                  +KV++DG P  RK+DL  +  Y  L + LE MF  +  + + K G  G     
Sbjct: 88  -------VKVSLDGAPYLRKIDLRVYGGYAQLLKALESMFKLTIGNYSEKEGYKG----- 135

Query: 204 IFGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGL 260
                         S++  TYEDK+GDWMLVGDVPW MF  S +RLRIM+ +EA G+
Sbjct: 136 --------------SEYEPTYEDKDGDWMLVGDVPWEMFVTSCKRLRIMKGTEARGV 178


>Medtr1g085750.1 | auxin-responsive AUX/IAA family protein | HC |
           chr1:38333347-38334717 | 20130731
          Length = 176

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 65/118 (55%), Gaps = 23/118 (19%)

Query: 140 IKDKRHIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGD 199
           + D     S+ F+KV M+G PIGRK++L AH+ Y  L  TLE MF               
Sbjct: 74  VNDCSDYNSAFFVKVYMEGIPIGRKLNLLAHNGYHELVNTLEQMF--------------- 118

Query: 200 DRGIIFGGERHSKLLDGSSK---FVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRT 254
           D  I++G E     +DG       VLTYED EGD ++VGDVPW MF  SV+RL+I R 
Sbjct: 119 DTTILWGTE-----MDGVQSERCHVLTYEDGEGDLIMVGDVPWEMFLSSVKRLKITRV 171


>Medtr7g110790.1 | auxin-responsive AUX/IAA family protein | HC |
           chr7:45409781-45408778 | 20130731
          Length = 161

 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 65/110 (59%), Gaps = 23/110 (20%)

Query: 148 SSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGIIFGG 207
           +S ++KV M+G PIGRK+++ AH SY  L +TLE MF               D  I++G 
Sbjct: 67  NSLYVKVYMEGIPIGRKLNILAHQSYHELVKTLEHMF---------------DTTILWGN 111

Query: 208 ERHSKLLDGSSK---FVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRT 254
           E     +DG       VLTYED+EGD ++VGDVPW MF  +V+RL+I R 
Sbjct: 112 E-----MDGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRV 156


>Medtr2g102490.1 | auxin-responsive AUX/IAA family protein | HC |
           chr2:44155116-44156253 | 20130731
          Length = 198

 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 9/108 (8%)

Query: 151 FIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGIIFGGERH 210
           ++KV +DG P  RKVDL  +  Y+ L   L  MF+ +  +I         R  +   ++ 
Sbjct: 88  YVKVAVDGAPYLRKVDLEVYECYDNLLTALNTMFSTNCFTI---------RNDLMNEKKF 138

Query: 211 SKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEAN 258
                 +++++ TYEDK+GDWML+GDVPW MF  S +R+R+M +S  N
Sbjct: 139 MDSRKNTNEYLATYEDKDGDWMLLGDVPWKMFVESCKRIRLMISSGDN 186


>Medtr3g106850.1 | auxin-responsive AUX/IAA family protein | HC |
           chr3:49381656-49382979 | 20130731
          Length = 213

 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 51/174 (29%)

Query: 85  SQVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINIKDKR 144
           + +VGWPP+ + R   F+ Q     +               RK  EN N           
Sbjct: 87  NHLVGWPPIKSWRKKEFHDQQLPEHI---------------RKANENQNR---------- 121

Query: 145 HIRSSP-FIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGI 203
             RS P ++KVNM+G  +GR+++L  ++SY+TL ++L  MF      + C+  N ++ G 
Sbjct: 122 --RSKPLYVKVNMEGVGMGRQINLRLYNSYQTLKDSLISMF------VKCQ--NFEETG- 170

Query: 204 IFGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEA 257
                         + + LT+++K+G+W L   + W  F G+VRRL I+R  E 
Sbjct: 171 --------------ANYTLTFQNKQGEWKLTSHITWQSFIGTVRRLAILRNGEC 210


>Medtr4g011880.1 | auxin-responsive AUX/IAA family protein | HC |
           chr4:3041610-3037433 | 20130731
          Length = 178

 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 80/192 (41%), Gaps = 64/192 (33%)

Query: 81  TNRPSQVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINI 140
             + +QVVGWPP+ + R  + N  +K                                  
Sbjct: 49  IEKKNQVVGWPPVCSYRKKNMNEGSKM--------------------------------- 75

Query: 141 KDKRHIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDD 200
                     ++KV+MDG P  RK+DL  H  Y  LA  LE +F         K ++   
Sbjct: 76  ----------YMKVSMDGAPYLRKIDLGLHKGYLELALALEKLFGCCGIEEALKDAD--- 122

Query: 201 RGIIFGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGL 260
                           + + V  YEDK+GDWMLVGDVPW MF  S +RLRIM+ S+A G 
Sbjct: 123 ----------------NCEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGF 166

Query: 261 APRLEEKNSRQK 272
              L+ K S ++
Sbjct: 167 G--LQPKGSLKR 176


>Medtr1g109510.1 | auxin-responsive AUX/IAA family protein | HC |
           chr1:49537832-49539058 | 20130731
          Length = 178

 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 150 PFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGIIFGGER 209
            ++KVNMDG  IGRK+ +  H  Y +LA  LEDMF   + S           GI      
Sbjct: 84  AYVKVNMDGVSIGRKICILDHGGYSSLAIQLEDMFGSQSVS-----------GI------ 126

Query: 210 HSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEAN 258
             +L +  S++ L Y+D E +W  VGDV W  F   V+RLRI R +  N
Sbjct: 127 --RLFESGSEYSLFYKDSEDNWRTVGDVLWKEFVECVKRLRIARKNAGN 173


>Medtr1g085750.2 | auxin-responsive AUX/IAA family protein | HC |
           chr1:38333347-38334717 | 20130731
          Length = 157

 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 23/103 (22%)

Query: 140 IKDKRHIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGD 199
           + D     S+ F+KV M+G PIGRK++L AH+ Y  L  TLE MF               
Sbjct: 74  VNDCSDYNSAFFVKVYMEGIPIGRKLNLLAHNGYHELVNTLEQMF--------------- 118

Query: 200 DRGIIFGGERHSKLLDGSSK---FVLTYEDKEGDWMLVGDVPW 239
           D  I++G E     +DG       VLTYED EGD ++VGDVPW
Sbjct: 119 DTTILWGTE-----MDGVQSERCHVLTYEDGEGDLIMVGDVPW 156


>Medtr1g040675.2 | auxin response factor | HC |
           chr1:15063472-15065737 | 20130731
          Length = 162

 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 18/89 (20%)

Query: 151 FIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGIIFGGERH 210
           ++KV+MDG P  RK+DL  +  Y  L + LE MF  +                   GE  
Sbjct: 91  YVKVSMDGAPYLRKIDLRIYGGYPELLKALETMFKLTI------------------GEYS 132

Query: 211 SKLLDGSSKFVLTYEDKEGDWMLVGDVPW 239
            +     S++  TYEDK+GDWMLVGDVPW
Sbjct: 133 EREGYKGSEYAPTYEDKDGDWMLVGDVPW 161


>Medtr2g005240.1 | auxin response factor 2 | HC | chr2:92911-103331
           | 20130731
          Length = 671

 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 56/121 (46%), Gaps = 25/121 (20%)

Query: 144 RHIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGI 203
           R IRS    KV+M G  +GR VDL+    YE L   LE+MF+                  
Sbjct: 544 RQIRSC--TKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFD------------------ 583

Query: 204 IFGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGLAPR 263
              GE    L   + K+++ Y D E D M+VGD PW  F   VR++ I    E   L+P+
Sbjct: 584 -IEGE----LCGATKKWLVVYTDNEDDMMMVGDDPWLEFCSVVRKMFIYTPEEVKKLSPK 638

Query: 264 L 264
           +
Sbjct: 639 I 639


>Medtr4g128070.1 | auxin-responsive AUX/IAA family protein | HC |
           chr4:53308708-53310353 | 20130731
          Length = 173

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 13/103 (12%)

Query: 150 PFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGIIFGGER 209
           P + V ++G  I +++ L  H SY++LA+ L  MF + T          DD      G+ 
Sbjct: 68  PAVTVVLEGRSICQRISLHNHGSYQSLAKALRQMFVDCT----------DD---CDAGDH 114

Query: 210 HSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIM 252
           H  L +     V+ YED E D +L GD+ W  F    +R+RI+
Sbjct: 115 HLDLSNAIPGHVIAYEDMENDLLLAGDLTWKDFVRVAKRIRIL 157


>Medtr7g062540.1 | auxin response factor 2 | HC |
           chr7:22756278-22761697 | 20130731
          Length = 680

 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 24/109 (22%)

Query: 153 KVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGIIFGGERHSK 212
           KV M G  +GR VDL+A   Y+ L + LE +F+        KG                 
Sbjct: 574 KVQMQGVAVGRAVDLTALDGYDQLIDELEKLFD-------IKGQ---------------- 610

Query: 213 LLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGLA 261
            +   +K+ + + D EGD MLVGD PW  F   VRR+ I  + + + ++
Sbjct: 611 -IQPRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVHKMS 658


>Medtr8g100050.1 | auxin response factor 2 | HC |
           chr8:40230869-40235830 | 20130731
          Length = 833

 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 24/122 (19%)

Query: 153 KVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGIIFGGERHSK 212
           KV+  G  +GR VDL+  S Y+ L   L+ +F                    F GE    
Sbjct: 714 KVHKKGIALGRSVDLTKFSDYDELTAELDQLFE-------------------FRGE---- 750

Query: 213 LLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGLAP-RLEEKNSRQ 271
           L+     +++ + D EGD MLVGD PW  F   VR++ I    E   ++P  L  KN   
Sbjct: 751 LISPQKDWLVVFTDNEGDMMLVGDDPWQEFCSMVRKIYIYPKEEIQKMSPGTLSSKNEEN 810

Query: 272 KS 273
            S
Sbjct: 811 HS 812


>Medtr4g021580.1 | auxin response factor 2 | HC |
           chr4:7078271-7072794 | 20130731
          Length = 667

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 24/117 (20%)

Query: 144 RHIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGI 203
           + I S    KV M G  +GR VDL+  + Y+ L   LE++F+                  
Sbjct: 550 KQICSRSRTKVQMQGVAVGRAVDLATLNGYDQLIGELEELFD------------------ 591

Query: 204 IFGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGL 260
           I G  +H    +      + + D EGD MLVGD PW  F   VRR+ I  + +   +
Sbjct: 592 IKGQLQHRNTWE------IVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKM 642


>Medtr8g027440.1 | auxin response factor 2 | HC |
           chr8:9733998-9728759 | 20130731
          Length = 677

 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 24/112 (21%)

Query: 153 KVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGIIFGGERHSK 212
           KV M+G  +GR +DL+  S Y+ L + +E +F+                     GE  S+
Sbjct: 562 KVQMEGVAVGRALDLTMLSGYDELIDEVEKLFD-------------------IKGELRSQ 602

Query: 213 LLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGLAPRL 264
                +K+ +T+ D E D MLVGD PW  F   V+++ I    E   +  +L
Sbjct: 603 -----NKWRVTFTDNENDMMLVGDDPWPEFCNMVKKIFICSNEELKKMKCKL 649


>Medtr1g024025.1 | auxin response factor 2 | LC |
           chr1:7778460-7771119 | 20130731
          Length = 1265

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 23/111 (20%)

Query: 151 FIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGIIFGGERH 210
           + KV   G+ +GR +D++   +YE L   +E MF          G   D +G        
Sbjct: 756 YTKVQKAGS-VGRSIDVTTFKNYEELIRAIECMFG-------LDGLLNDTKG-------- 799

Query: 211 SKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGLA 261
                  S + L Y D E D +LVGD PW  F G VR +RI+  SE   ++
Sbjct: 800 -------SGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVKEMS 843


>Medtr6g488150.2 | auxin response factor | HC |
           chr6:33216341-33219347 | 20130731
          Length = 193

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 30/105 (28%)

Query: 86  QVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINIKDKRH 145
           QVVGWPP+ + R NS  +Q++                          NDN  +  K    
Sbjct: 101 QVVGWPPIRSFRKNSMATQSQK-------------------------NDNDDVEAKS--- 132

Query: 146 IRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTAS 190
                ++KV+MDG P  RKVDL    +Y+ L+  LE MF+  T S
Sbjct: 133 --GCLYVKVSMDGAPYLRKVDLKIFGTYKELSSALEKMFSCFTIS 175