Miyakogusa Predicted Gene
- Lj0g3v0343699.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0343699.1 Non Characterized Hit- tr|F6HP54|F6HP54_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,72.07,0,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; seg,NULL;
PORR,Plant organelle RNA recognition doma,CUFF.23574.1
(454 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g033595.1 | plant organelle RNA recognition domain protein... 661 0.0
Medtr2g067960.1 | plant organelle RNA recognition domain protein... 554 e-158
Medtr3g063230.1 | plant organelle RNA recognition domain protein... 206 4e-53
Medtr7g088530.1 | plant organelle RNA recognition domain protein... 198 8e-51
Medtr3g063230.2 | plant organelle RNA recognition domain protein... 180 2e-45
Medtr3g105530.1 | plant organelle RNA recognition domain protein... 150 3e-36
Medtr7g117270.1 | plant organelle RNA recognition domain protein... 145 1e-34
Medtr1g032380.1 | plant organelle RNA recognition domain protein... 136 5e-32
Medtr1g032040.1 | plant organelle RNA recognition domain protein... 136 5e-32
Medtr1g072550.1 | plant organelle RNA recognition domain protein... 135 1e-31
Medtr1g072550.2 | plant organelle RNA recognition domain protein... 135 1e-31
Medtr6g043850.1 | plant organelle RNA recognition domain protein... 133 3e-31
Medtr0153s0070.2 | plant organelle RNA recognition domain protei... 126 5e-29
Medtr7g107280.1 | plant organelle RNA recognition domain protein... 125 1e-28
Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family p... 122 8e-28
Medtr1g019170.4 | plant organelle RNA recognition domain protein... 122 9e-28
Medtr1g019170.3 | plant organelle RNA recognition domain protein... 122 9e-28
Medtr1g019170.1 | plant organelle RNA recognition domain protein... 122 9e-28
Medtr1g019170.2 | plant organelle RNA recognition domain protein... 122 9e-28
Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family p... 122 9e-28
Medtr1g098960.1 | plant organelle RNA recognition domain protein... 119 7e-27
Medtr3g030020.1 | plant organelle RNA recognition domain protein... 117 2e-26
Medtr8g089370.2 | plant organelle RNA recognition domain protein... 108 1e-23
Medtr8g089370.1 | plant organelle RNA recognition domain protein... 108 1e-23
Medtr4g053720.1 | plant organelle RNA recognition domain protein... 106 5e-23
Medtr3g074730.1 | plant organelle RNA recognition domain protein... 103 5e-22
Medtr0153s0070.1 | plant organelle RNA recognition domain protei... 100 2e-21
Medtr3g083350.1 | plant organelle RNA recognition domain protein... 96 6e-20
Medtr6g033585.1 | plant organelle RNA recognition domain protein... 93 5e-19
Medtr7g018630.1 | plant organelle RNA recognition domain protein... 92 8e-19
Medtr3g448960.1 | plant organelle RNA recognition domain protein... 83 7e-16
Medtr8g102038.1 | plant organelle RNA recognition domain protein... 61 3e-09
>Medtr6g033595.1 | plant organelle RNA recognition domain protein |
HC | chr6:10945964-10948263 | 20130731
Length = 466
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/423 (77%), Positives = 356/423 (84%), Gaps = 4/423 (0%)
Query: 1 MRFFGSISTNFFKRKLENFPLIHHFINHNPSFNLKFVREKSQSTAIPKKQLRIRDHGYDN 60
MR F +NFFK +N LIHH +NP+ N +RE SQST+IPKKQ RIRDHGYDN
Sbjct: 1 MRVFIFRISNFFK---QNLQLIHHH-QYNPNPNFSSIREFSQSTSIPKKQQRIRDHGYDN 56
Query: 61 YMEVEKKTRKVLKFQNLILNEPSQSVPIPRLETLARRIGFTRHEAGAFILKFPHVFEIFE 120
YME+EKKTRKVLKFQNLIL+EP+QS+PI RLET A RIGFTRHEA AFILKF HVFEIFE
Sbjct: 57 YMEIEKKTRKVLKFQNLILSEPNQSIPISRLETQAHRIGFTRHEAIAFILKFLHVFEIFE 116
Query: 121 HPVQRILFCRLTRKAVLQIDRERHALAGYLPRAVTSLRKLVMMANGHRLRLEHVRIARAV 180
HPVQRILFCRLTRKA+LQI++ER ALA + RAVT LRK++MM+NG RLRLEHVRIAR+
Sbjct: 117 HPVQRILFCRLTRKAILQIEQERLALADQVERAVTRLRKMIMMSNGLRLRLEHVRIARSA 176
Query: 181 LGLPDDFEQSVVLRYPEFFRLVDADETRNKYIELVEFDPRLATCAIXXXXXXXXXXXGGD 240
LGLPDDFE SVVLRYPEFFRLVDA ETRNKYIELVEFDP+LA CAI G +
Sbjct: 177 LGLPDDFEYSVVLRYPEFFRLVDAKETRNKYIELVEFDPKLAKCAIEDARERVYRERGSE 236
Query: 241 AEDIRFSFWINFPPGFKIGKYFKIAMWKWQRVPYWSPYEDVSGYDLRSIEAQKRMEKRAV 300
AEDIRFSF I+FPPGFKI KYF+IAMWKWQR+PYWSPYEDV GYDLRSIEAQKRMEKRAV
Sbjct: 237 AEDIRFSFLIDFPPGFKISKYFRIAMWKWQRLPYWSPYEDVLGYDLRSIEAQKRMEKRAV 296
Query: 301 ATIHEILSLTVEKKITLERIAHFRMAMNLPKKLKEFLLQHQGIFYVSTRGNQGKLHTVFL 360
ATIHE+LSLTVEKKITLERIAHFRMAMNLPKKLKEFLLQHQGIFYVSTRGN GKLHTVFL
Sbjct: 297 ATIHELLSLTVEKKITLERIAHFRMAMNLPKKLKEFLLQHQGIFYVSTRGNHGKLHTVFL 356
Query: 361 REAYRRGELIEPNDXXXXXXXXXXXXXXSPRKAKVDRELVGYRRRGLDDEMGQVTRAYVE 420
REAY +GEL+EPND SPRKA+VDREL+GYRR LDDEMGQVTRAYVE
Sbjct: 357 REAYSKGELVEPNDLYLARRKLVELVLLSPRKARVDRELIGYRRSKLDDEMGQVTRAYVE 416
Query: 421 DAC 423
DAC
Sbjct: 417 DAC 419
>Medtr2g067960.1 | plant organelle RNA recognition domain protein |
HC | chr2:28431693-28434356 | 20130731
Length = 431
Score = 554 bits (1427), Expect = e-158, Method: Compositional matrix adjust.
Identities = 273/354 (77%), Positives = 297/354 (83%)
Query: 70 KVLKFQNLILNEPSQSVPIPRLETLARRIGFTRHEAGAFILKFPHVFEIFEHPVQRILFC 129
K + LIL+E +QS+PIPRLETLA RIGFTRHEA AFILKFP+VFEIFEH VQRILFC
Sbjct: 31 KSSQISELILSELNQSIPIPRLETLAHRIGFTRHEASAFILKFPYVFEIFEHLVQRILFC 90
Query: 130 RLTRKAVLQIDRERHALAGYLPRAVTSLRKLVMMANGHRLRLEHVRIARAVLGLPDDFEQ 189
RLTRK +LQI++ER ALA + R VT LRK++MM+NG RLRLEHVRIAR+ LGL DDFE
Sbjct: 91 RLTRKTILQIEQERLALADQVGRTVTCLRKMIMMSNGLRLRLEHVRIARSALGLRDDFEY 150
Query: 190 SVVLRYPEFFRLVDADETRNKYIELVEFDPRLATCAIXXXXXXXXXXXGGDAEDIRFSFW 249
VVLRYPEFFRLVDA ETRNKYIELVEFDP+LATCAI G +AEDIRFSF
Sbjct: 151 LVVLRYPEFFRLVDAKETRNKYIELVEFDPKLATCAIEDARERVYRERGSEAEDIRFSFL 210
Query: 250 INFPPGFKIGKYFKIAMWKWQRVPYWSPYEDVSGYDLRSIEAQKRMEKRAVATIHEILSL 309
I+F PGFKI KYF+IAMWKWQ +PYWSPYEDV GYDLRS EAQKRMEKRAVATIHE+LSL
Sbjct: 211 IDFLPGFKISKYFRIAMWKWQSLPYWSPYEDVWGYDLRSPEAQKRMEKRAVATIHELLSL 270
Query: 310 TVEKKITLERIAHFRMAMNLPKKLKEFLLQHQGIFYVSTRGNQGKLHTVFLREAYRRGEL 369
TVEKKITLERIAHF+MAMNLPKKLKEFLLQHQGIFYVSTRGN GKLHTVFLREAYR+GEL
Sbjct: 271 TVEKKITLERIAHFQMAMNLPKKLKEFLLQHQGIFYVSTRGNHGKLHTVFLREAYRKGEL 330
Query: 370 IEPNDXXXXXXXXXXXXXXSPRKAKVDRELVGYRRRGLDDEMGQVTRAYVEDAC 423
+EPND SPRKA+VDRELVGYRR LDDEMGQVTRAY+EDAC
Sbjct: 331 VEPNDLYLARRKLAEVVLLSPRKARVDRELVGYRRSKLDDEMGQVTRAYLEDAC 384
>Medtr3g063230.1 | plant organelle RNA recognition domain protein |
HC | chr3:28611519-28613057 | 20130731
Length = 425
Score = 206 bits (524), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 130/350 (37%), Positives = 187/350 (53%), Gaps = 26/350 (7%)
Query: 36 FVREKSQSTAIPKKQLRIRDHGYDNYMEVEKKTRKVLKFQNLILNEP-SQSVPIPRLETL 94
FVR S++T+I R RD ++ M+ K KV+ +LIL P ++SV + L L
Sbjct: 38 FVR--SKTTSIQYVNSRARDPTFEKLMDKYKNLLKVIAVHDLILANPKNRSVSVDFLSNL 95
Query: 95 ARRIGFTRHEAGAFILKFPHVFEIFEHPVQRILFCRLTRKAVLQIDRERHALAGYLPRAV 154
++R+ R A AF+ KFPH+F I+ P + FCRLT A+ +E A+ LP V
Sbjct: 96 SQRLHLNRG-ATAFLRKFPHIFNIYYEPSKLQPFCRLTDAALDVSRQEAEAINTSLPLVV 154
Query: 155 TSLRKLVMMANGHRLRLEHVRIARAVLGLPDDFEQSVVLRYPEFFRLVDADETRNKYIEL 214
L +++ M+ + L V LGLPDDFE+SV+ F+L DADE ++L
Sbjct: 155 ERLVRILSMSASKTVPLRAVFKVWRELGLPDDFEESVIAANSSVFQLCDADEQNTHLLKL 214
Query: 215 VEFDP-----------RLATCAIXXXXXXXXXXXGGDAEDIRFSFWINFPPGFKIGKYFK 263
V P R+ C ++ ++R+SF +PPG ++ K F+
Sbjct: 215 VGDVPSSGFRAAVEDWRVVECC--------KDESSVNSMEMRYSFKQRYPPGMRLSKNFR 266
Query: 264 IAMWKWQRVPYWSPYEDVSGYDLRSIEAQKRMEKRAVATIHEILSLTVEKKITLERIAHF 323
+ +WQ +PY PYE VS S MEKRAV+ +HE +SLTVEK + +E+I+ F
Sbjct: 267 ANVKEWQSLPYMGPYEMVSEKKKTSKAGMMAMEKRAVSIVHEFMSLTVEKMVEVEKISQF 326
Query: 324 RMAMNLPKKLKEFLLQHQGIFYVSTRGNQGKLHTVFLREAYRRGELIEPN 373
R + +++ L H GIFY+ST+ GK HTVFLREAY RG LI PN
Sbjct: 327 RKWFGIDFNIRDLFLDHPGIFYLSTK---GKRHTVFLREAYERGCLIHPN 373
>Medtr7g088530.1 | plant organelle RNA recognition domain protein |
HC | chr7:34489084-34490337 | 20130731
Length = 417
Score = 198 bits (504), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 183/335 (54%), Gaps = 12/335 (3%)
Query: 39 EKSQSTAIPKKQLRIRDHGYDNYMEVEKKTRKVLKFQNLILNEPSQSVPIPRLETLARRI 98
+K +A + + RIRD +D KK VLK +NLI N S +L + + I
Sbjct: 33 KKPTISAQTRLEDRIRDTHFDKLTTHFKKLSLVLKTRNLISNRKRGSFVSLQLMSRWKNI 92
Query: 99 GFTRHEAGAFILKFPHVFEIFEHPVQRILFCRLTRKAVLQIDRERHALAGYLPRAVTSLR 158
+F+ K+PHVF +F HP +R + CR+T+K I E + + V ++
Sbjct: 93 TGLNVTVTSFLQKYPHVFYLFVHPFRRNMCCRMTKKMKELILLEEVVVRQHEVEVVKRVK 152
Query: 159 KLVMMANGHRLRLEHVRIARAVLGLPDDFEQSVVLRYPEFFRLVDADETRNKYIELVEFD 218
KL+MM+ L L +R+ R LGLP DF +S++ RY + FRLVD + + LV +D
Sbjct: 153 KLLMMSVNGTLHLHALRLIRRELGLPCDFRESILGRYSDEFRLVDLE-----IVALVGWD 207
Query: 219 PRLATCAIXXXXXXXXXXXGGDAEDIRFSFWINFPPGFKIGKYFKIAMWKWQRVPYWSPY 278
L + + +F+F INFP GFKI + F+ + WQR+ Y PY
Sbjct: 208 DELGMARVEEWREREYREKWLSEFETKFAFPINFPTGFKIERGFREKLKGWQRLSYTKPY 267
Query: 279 EDVSGYDLRSIEAQKRMEKRAVATIHEILSLTVEKKITLERIAHFRMAMNLPKKLKEFLL 338
E + +R EKRAVA +HE+LSLTVEK + ++++AHFR ++ ++E LL
Sbjct: 268 ERKNV----KCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFDIEVNVRELLL 323
Query: 339 QHQGIFYVSTRGNQGKLHTVFLREAYRRGELIEPN 373
+H GIFY+ST+GN TVFLREAY +G LIEPN
Sbjct: 324 RHPGIFYISTKGNA---QTVFLREAYEKGGLIEPN 355
>Medtr3g063230.2 | plant organelle RNA recognition domain protein |
HC | chr3:28611460-28613057 | 20130731
Length = 401
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 124/339 (36%), Positives = 180/339 (53%), Gaps = 28/339 (8%)
Query: 36 FVREKSQSTAIPKKQLRIRDHGYDNYMEVEKKTRKVLKFQNLILNEP-SQSVPIPRLETL 94
FVR S++T+I R RD ++ M+ K KV+ +LIL P ++SV + L L
Sbjct: 38 FVR--SKTTSIQYVNSRARDPTFEKLMDKYKNLLKVIAVHDLILANPKNRSVSVDFLSNL 95
Query: 95 ARRIGFTRHEAGAFILKFPHVFEIFEHPVQRILFCRLTRKAVLQIDRERHALAGYLPRAV 154
++R+ R A AF+ KFPH+F I+ P + FCRLT A+ +E A+ LP V
Sbjct: 96 SQRLHLNRG-ATAFLRKFPHIFNIYYEPSKLQPFCRLTDAALDVSRQEAEAINTSLPLVV 154
Query: 155 TSLRKLVMMANGHRLRLEHVRIARAVLGLPDDFEQSVVLRYPEFFRLVDADETRNKYIEL 214
L +++ M+ + L RAV L D EQ+ L +LV D + +
Sbjct: 155 ERLVRILSMSASKTVPL------RAVFKLCDADEQNTHL-----LKLV-GDVPSSGFRAA 202
Query: 215 VEFDPRLATCAIXXXXXXXXXXXGGDAEDIRFSFWINFPPGFKIGKYFKIAMWKWQRVPY 274
VE D R+ C ++ ++R+SF +PPG ++ K F+ + +WQ +PY
Sbjct: 203 VE-DWRVVECC--------KDESSVNSMEMRYSFKQRYPPGMRLSKNFRANVKEWQSLPY 253
Query: 275 WSPYEDVSGYDLRSIEAQKRMEKRAVATIHEILSLTVEKKITLERIAHFRMAMNLPKKLK 334
PYE VS S MEKRAV+ +HE +SLTVEK + +E+I+ FR + ++
Sbjct: 254 MGPYEMVSEKKKTSKAGMMAMEKRAVSIVHEFMSLTVEKMVEVEKISQFRKWFGIDFNIR 313
Query: 335 EFLLQHQGIFYVSTRGNQGKLHTVFLREAYRRGELIEPN 373
+ L H GIFY+ST+ GK HTVFLREAY RG LI PN
Sbjct: 314 DLFLDHPGIFYLSTK---GKRHTVFLREAYERGCLIHPN 349
>Medtr3g105530.1 | plant organelle RNA recognition domain protein |
HC | chr3:48661486-48663294 | 20130731
Length = 431
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 106/343 (30%), Positives = 169/343 (49%), Gaps = 13/343 (3%)
Query: 36 FVREKSQSTAIPKKQLRIRDHGYDNYMEVEKKTRKVLKFQNLILNEPSQSVPIPRLETLA 95
F R + S + + + R H + E K T K++ L+ EP +P+ L
Sbjct: 20 FERWMTTSKRVQDRSKKKRVHELEAATEKWKITSKIVFLIELLEQEPEIVIPVRSLSHYR 79
Query: 96 RRIGFTR-HEAGAFILKFPHVFEIFEHPVQRILFCRLTRKAVLQIDRERHALAGYLPRAV 154
++I + H F+ K P +FE+++ +L+C LT+KA + ++ + + +A
Sbjct: 80 KQISLPKPHRISDFLRKTPKLFELYKDR-NGVLWCGLTQKAEVLMEEHKRVIEENEDKAA 138
Query: 155 TSLRKLVMMANGHRLRLEHVRIARAVLGLPDDFEQSVVLRYPEFFRLVDADETRNKYIEL 214
+ +L+MM+ R++L+ + R GLP DF V +YP+ FR+V +++EL
Sbjct: 139 EYVTRLLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLDDVEFLEL 198
Query: 215 VEFDPRLATCAIXXXXXXXXXXXGGDAED---IRFSFWINFPPGFK-IGKYFKIAMWKWQ 270
V ++ A I + F + FP FK + Y+ + +Q
Sbjct: 199 VSWNSEWAITEIEKKNKMILEGVTETEHTPGLLSLPFPLKFPANFKRVHSYYGEKIKMFQ 258
Query: 271 RVPYWSPYEDVSGYDLRSIEAQKRMEKRAVATIHEILSLTVEKKITLERIAHFRMAMNLP 330
Y SPY D G S+E +KRAVA +HE+LS TVEK++ + + HFR + +P
Sbjct: 259 ERTYLSPYADAKGLKPGSLE----FDKRAVAVMHELLSFTVEKRLVTDHLTHFRWELVMP 314
Query: 331 KKLKEFLLQHQGIFYVSTRGNQGKLHTVFLREAYRRGELIEPN 373
+KL LL+H GIFYVS R GK +VFL EAY ELIE +
Sbjct: 315 QKLMRLLLKHCGIFYVSER---GKRFSVFLTEAYEGSELIEKS 354
>Medtr7g117270.1 | plant organelle RNA recognition domain protein |
HC | chr7:48441549-48444050 | 20130731
Length = 530
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/324 (31%), Positives = 167/324 (51%), Gaps = 21/324 (6%)
Query: 58 YDNYMEVEKKTRKVLKFQNLILNEPSQSVPIPRLETLARRIGFTRHEAGAFILK-FPHVF 116
+DN ++ +KK + VLK + +++++P++ + + L R +G + IL+ FP VF
Sbjct: 92 FDNVIQKDKKLKFVLKVRKILVSKPTRVMSLQELGKYRRELGLDKKRKLIVILRRFPGVF 151
Query: 117 EIFEHPVQRILFCRLTRKAVLQID--RERHALAGYLPRAVTSLRKLVMMANGHRLRLEHV 174
EI E + F + L ++ R R+ + + VT LRKL+MM R+ LE +
Sbjct: 152 EIVEDGCYSLKFKMTSEAEKLYLEELRVRNEMEDVV---VTKLRKLLMMPLEKRILLEKI 208
Query: 175 RIARAVLGLPDDFEQSVVLRYPEFFRLVDADETRNKYIELVEFDPRLATCAIXXXXXXXX 234
LGLP +F ++ RYPEFF++V + R +EL +DP LA A
Sbjct: 209 GHLANDLGLPREFRDTICHRYPEFFKVVQTE--RGPALELTHWDPHLAVSAAELSAEENR 266
Query: 235 XXXGGDAEDI-----RFSFWINFPPGFKIGKYFKIAMWKWQRVPYWSPYEDVSGYDLRSI 289
+ I +F+ + P G + K + +++ +PY SPY D S L +
Sbjct: 267 IREVEEQNLIIDRAPKFN-RVKLPKGLSLSKGEMRKIMQFRDIPYISPYSDFSMIGLNTP 325
Query: 290 EAQKRMEKRAVATIHEILSLTVEKKITLERIAHFRMAMNLPKKLKEFLLQHQGIFYVSTR 349
E EK A IHEILSLT+EK+ ++ HFR ++L+ L++H +FY+S +
Sbjct: 326 EK----EKHACGVIHEILSLTLEKRTLVDNFTHFREEFRFSQQLRGMLIRHPDMFYISLK 381
Query: 350 GNQGKLHTVFLREAYRRGELIEPN 373
G++ +VFLREAYR +L++ +
Sbjct: 382 GDR---DSVFLREAYRDSQLVDKD 402
>Medtr1g032380.1 | plant organelle RNA recognition domain protein |
HC | chr1:11495605-11496780 | 20130731
Length = 391
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 156/321 (48%), Gaps = 15/321 (4%)
Query: 54 RDHGYDNYMEVEKKTRKVLKFQNLILNEPSQSVPIPRLETLARRIGFTRHEAGAFILKFP 113
+D D +E +K+ ++ + +LNEP Q +P+ LE +R+ + + F+ + P
Sbjct: 37 KDPSLDQAIEQDKRFKQCFRVVKEVLNEPGQVIPLRYLEKRRQRMRL-KVKIDTFLNQNP 95
Query: 114 HVFEIF----EHPVQRILFCRLTRKAVLQIDRERHALAGYLPRAVTSLRKLVMMANGHRL 169
+F+++ + + + F R++ + ++ E+ P V+ L KL+MM+ +
Sbjct: 96 FLFDVYYDRIKPKTKPVKFLRVSDHLLQFLEEEKRIYKENEPLIVSKLCKLLMMSKDKVV 155
Query: 170 RLEHVRIARAVLGLPDDFEQSVVLRYPEFFRLVDADETRNKYIELVEFDPRLATCAIXXX 229
+ + + G P+DF +V RYPE+FRL ++ELV ++P A +
Sbjct: 156 SADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNPEFAKSVVEKR 215
Query: 230 XXXXXXXXGGDAEDIRFSFWINFPPGFKIGKYFKIAMWKWQRVPYWSPYEDVSGYDLRSI 289
G +R SF + PPGF + K + + W + Y SPYEDVS ++
Sbjct: 216 AEEESSATGI---RVRPSFNVKLPPGFVLKKEMREWIRDWMELDYVSPYEDVSHFE---- 268
Query: 290 EAQKRMEKRAVATIHEILSLTVEKKITLERIAHFRMAMNLPKKLKEFLLQHQGIFYVSTR 349
++ + MEKR+V HE+LSL++ K+I + + F +H GIFY+S +
Sbjct: 269 QSSREMEKRSVGVFHELLSLSLYKRIPVPILGKFCDEYRFSNAFSSAFTRHSGIFYLSLK 328
Query: 350 GNQGKLHTVFLREAYRRGELI 370
G + T LREAY +LI
Sbjct: 329 GG---IETAMLREAYEGDKLI 346
>Medtr1g032040.1 | plant organelle RNA recognition domain protein |
HC | chr1:11336962-11338761 | 20130731
Length = 391
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 156/321 (48%), Gaps = 15/321 (4%)
Query: 54 RDHGYDNYMEVEKKTRKVLKFQNLILNEPSQSVPIPRLETLARRIGFTRHEAGAFILKFP 113
+D D +E +K+ ++ + +LNEP Q +P+ LE +R+ + + F+ + P
Sbjct: 37 KDPSLDQAIEQDKRFKQCFRVVKEVLNEPGQVIPLRYLEKRRQRMRL-KVKIDTFLNQNP 95
Query: 114 HVFEIF----EHPVQRILFCRLTRKAVLQIDRERHALAGYLPRAVTSLRKLVMMANGHRL 169
+F+++ + + + F R++ + ++ E+ P V+ L KL+MM+ +
Sbjct: 96 FLFDVYYDRIKPKTKPVKFLRVSDHLLQFLEEEKRIYKENEPLIVSKLCKLLMMSKDKVV 155
Query: 170 RLEHVRIARAVLGLPDDFEQSVVLRYPEFFRLVDADETRNKYIELVEFDPRLATCAIXXX 229
+ + + G P+DF +V RYPE+FRL ++ELV ++P A +
Sbjct: 156 SADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNPEFAKSVVEKR 215
Query: 230 XXXXXXXXGGDAEDIRFSFWINFPPGFKIGKYFKIAMWKWQRVPYWSPYEDVSGYDLRSI 289
G +R SF + PPGF + K + + W + Y SPYEDVS ++
Sbjct: 216 AEEESSATGI---RVRPSFNVKLPPGFVLKKEMREWIRDWMELDYVSPYEDVSHFE---- 268
Query: 290 EAQKRMEKRAVATIHEILSLTVEKKITLERIAHFRMAMNLPKKLKEFLLQHQGIFYVSTR 349
++ + MEKR+V HE+LSL++ K+I + + F +H GIFY+S +
Sbjct: 269 QSSREMEKRSVGVFHELLSLSLYKRIPVPILGKFCDEYRFSNAFSSAFTRHSGIFYLSLK 328
Query: 350 GNQGKLHTVFLREAYRRGELI 370
G + T LREAY +LI
Sbjct: 329 GG---IETAMLREAYEGDKLI 346
>Medtr1g072550.1 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32198282 | 20130731
Length = 393
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 155/322 (48%), Gaps = 15/322 (4%)
Query: 54 RDHGYDNYMEVEKKTRKVLKFQNLILNEPSQSVPIPRLETLARRIGFTRHEAGAFILKFP 113
+D D +E +K+ ++ + +LNEP Q +P+ LE +R+ + + F+ + P
Sbjct: 37 KDQSLDQAIEQDKRFKQCARVVKEVLNEPGQVIPLRYLEKRRQRMRL-KVKIDTFLNQNP 95
Query: 114 HVFEIF----EHPVQRILFCRLTRKAVLQIDRERHALAGYLPRAVTSLRKLVMMANGHRL 169
+F+++ + + + F R++ + + E+ P V+ L KL+MM+ +
Sbjct: 96 FLFDVYYDRIKPKTEPVKFLRVSDHLLQFLQEEKRIYKENEPLIVSKLCKLLMMSKDKIV 155
Query: 170 RLEHVRIARAVLGLPDDFEQSVVLRYPEFFRLVDADETRNKYIELVEFDPRLATCAIXXX 229
+ + + G P+DF +V RYPE+FRL ++ELV ++P A I
Sbjct: 156 SADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNPEFAKSVIERR 215
Query: 230 XXXXXXXXGGDAEDIRFSFWINFPPGFKIGKYFKIAMWKWQRVPYWSPYEDVSGYDLRSI 289
G +R SF + PPGF + K + + W + Y SPYEDVS +
Sbjct: 216 AEEESRATGI---RVRPSFNVKLPPGFVLKKEMREWIRDWMELDYVSPYEDVSHLE---- 268
Query: 290 EAQKRMEKRAVATIHEILSLTVEKKITLERIAHFRMAMNLPKKLKEFLLQHQGIFYVSTR 349
+A + MEKR+V HE+LSL++ K++ + + F +H GIFY+S +
Sbjct: 269 QASREMEKRSVGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYMSLK 328
Query: 350 GNQGKLHTVFLREAYRRGELIE 371
G + T LREAY +LI+
Sbjct: 329 GG---IETAMLREAYDGDKLID 347
>Medtr1g072550.2 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32199304 | 20130731
Length = 393
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 155/322 (48%), Gaps = 15/322 (4%)
Query: 54 RDHGYDNYMEVEKKTRKVLKFQNLILNEPSQSVPIPRLETLARRIGFTRHEAGAFILKFP 113
+D D +E +K+ ++ + +LNEP Q +P+ LE +R+ + + F+ + P
Sbjct: 37 KDQSLDQAIEQDKRFKQCARVVKEVLNEPGQVIPLRYLEKRRQRMRL-KVKIDTFLNQNP 95
Query: 114 HVFEIF----EHPVQRILFCRLTRKAVLQIDRERHALAGYLPRAVTSLRKLVMMANGHRL 169
+F+++ + + + F R++ + + E+ P V+ L KL+MM+ +
Sbjct: 96 FLFDVYYDRIKPKTEPVKFLRVSDHLLQFLQEEKRIYKENEPLIVSKLCKLLMMSKDKIV 155
Query: 170 RLEHVRIARAVLGLPDDFEQSVVLRYPEFFRLVDADETRNKYIELVEFDPRLATCAIXXX 229
+ + + G P+DF +V RYPE+FRL ++ELV ++P A I
Sbjct: 156 SADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNPEFAKSVIERR 215
Query: 230 XXXXXXXXGGDAEDIRFSFWINFPPGFKIGKYFKIAMWKWQRVPYWSPYEDVSGYDLRSI 289
G +R SF + PPGF + K + + W + Y SPYEDVS +
Sbjct: 216 AEEESRATGI---RVRPSFNVKLPPGFVLKKEMREWIRDWMELDYVSPYEDVSHLE---- 268
Query: 290 EAQKRMEKRAVATIHEILSLTVEKKITLERIAHFRMAMNLPKKLKEFLLQHQGIFYVSTR 349
+A + MEKR+V HE+LSL++ K++ + + F +H GIFY+S +
Sbjct: 269 QASREMEKRSVGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYMSLK 328
Query: 350 GNQGKLHTVFLREAYRRGELIE 371
G + T LREAY +LI+
Sbjct: 329 GG---IETAMLREAYDGDKLID 347
>Medtr6g043850.1 | plant organelle RNA recognition domain protein |
LC | chr6:15115306-15109090 | 20130731
Length = 664
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 102/325 (31%), Positives = 172/325 (52%), Gaps = 21/325 (6%)
Query: 53 IRDHGYDNYMEVEKKTRKVLKFQNLILNEPSQSVPIPRL-ETLARRIGFTRHEAGAFILK 111
+RD G D+ +E EK + +L +LI NEP++S+PI + ++ + + F E FI K
Sbjct: 31 VRDRGLDHAVEREKNLKPLLTLLSLINNEPTKSLPISIIKQSRSLNLPFRPIE---FIRK 87
Query: 112 FPHVFEIF-EHPVQRILFCRLTRKAVLQIDRERHALAGYLPRAVTSLR--KLVMMANGHR 168
+P VFE F + +LT KA+ E+ +A + + ++R KL+M+A G++
Sbjct: 88 YPSVFEEFYNNGCTFEPHVKLTAKAIDLNADEKFLVASDVFKKDVAVRVLKLLMIAKGNK 147
Query: 169 LRLEHVRIARAVLGLPDDFEQSVVLRYPEFFRLVDADETRNKYIELVEFDPRLATCAIXX 228
+ L V + LGLPDD+ +SV+ +P+ FR+V D N +ELV + + + +
Sbjct: 148 IPLSVVDGLKWDLGLPDDYVKSVIPEFPDHFRVVGVDN--NAVLELVCWSKKHSVSFLEK 205
Query: 229 XXXXXXXXXGGDAEDIRFSFWINFPPGFKIGKYFKIAMWKWQRVPYWSPYEDVSGYDLRS 288
G + F + F GF++ K ++ + +W + Y SPYE+ G +L
Sbjct: 206 KYGDKAKGQGKE-----LGFPVQFSTGFEMDKKYEKWVKEWNGLRYVSPYEN--GVNLSG 258
Query: 289 IEAQKRMEKRAVATIHEILSLTVEKKITLERIAHFRMAMNLPKKLKEFLLQHQGIFYVST 348
+ + +K V +HEIL+L V KK + + + L + K +LQH GIFYVS+
Sbjct: 259 --SSEESDKWVVGVLHEILNLLVSKKTEKDNVLMIGEWLGLASRFKRVILQHPGIFYVSS 316
Query: 349 RGNQGKLHTVFLREAYRRGELIEPN 373
+ +++TV LR+ Y+RG L+E N
Sbjct: 317 ---KNRMYTVVLRDGYKRGLLVEDN 338
>Medtr0153s0070.2 | plant organelle RNA recognition domain protein |
HC | scaffold0153:34902-38440 | 20130731
Length = 335
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 150/312 (48%), Gaps = 10/312 (3%)
Query: 38 REKSQSTAIPKKQLRIRDHGYDNYMEVEKKTRKVLKFQNLILNEPSQSVPIPRLETLARR 97
R + S + + + R H + E K T K++ L+ EP +P+ L ++
Sbjct: 29 RWMTTSKRVQDRSKKKRVHELEAATEKWKITSKIVFLIELLEQEPEIVIPVRSLSHYRKQ 88
Query: 98 IGFTR-HEAGAFILKFPHVFEIFEHPVQRILFCRLTRKAVLQIDRERHALAGYLPRAVTS 156
I + H F+ K P +FE+++ +L+C LT+KA + ++ + + +A
Sbjct: 89 ISLPKPHRISDFLRKTPKLFELYKDR-NGVLWCGLTQKAEVLMEEHKRVIEENEDKAAEY 147
Query: 157 LRKLVMMANGHRLRLEHVRIARAVLGLPDDFEQSVVLRYPEFFRLVDADETRNKYIELVE 216
+ +L+MM+ R++L+ + R GLP DF V +YP+ FR+V +++ELV
Sbjct: 148 VTRLLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLDDVEFLELVS 207
Query: 217 FDPRLATCAIXXXXXXXXXXXGGDAED---IRFSFWINFPPGFK-IGKYFKIAMWKWQRV 272
++ A I + F + FP FK + Y+ + +Q
Sbjct: 208 WNSEWAITEIEKKNKMIMEGVTETEHTPGLLSLPFPLKFPANFKRVHSYYGEKIKMFQER 267
Query: 273 PYWSPYEDVSGYDLRSIEAQKRMEKRAVATIHEILSLTVEKKITLERIAHFRMAMNLPKK 332
Y SPY D G S+E +KRAVA +HE+LS TVEK++ + + HFR + +P+K
Sbjct: 268 TYLSPYADAKGLKPGSLE----FDKRAVAVMHELLSFTVEKRLVTDHLTHFRWELVMPQK 323
Query: 333 LKEFLLQHQGIF 344
L LL+H GIF
Sbjct: 324 LMRLLLKHCGIF 335
>Medtr7g107280.1 | plant organelle RNA recognition domain protein |
HC | chr7:43760664-43762324 | 20130731
Length = 420
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 157/339 (46%), Gaps = 16/339 (4%)
Query: 42 QSTAIPKKQLR-IRDHGYDNYMEVEKKTRKVLKFQNLILNEPSQSVPIPRLETLARRIGF 100
QS I K +L+ +++ D+ ++ E + ++ I + + + +G
Sbjct: 21 QSRGIAKVRLKWVKNRSIDHIIDKETDLKAASLLKDAIKRSSTSFLTAKTFSDWQKLLGL 80
Query: 101 TRHEAGAFILKFPHVFEIFEHPVQRILFC-RLTRKAVLQIDRERHALAGYLPRAVTSLRK 159
T FI ++P +F F HP L C RLT A L +E+ A + V K
Sbjct: 81 TV-PVLRFIRRYPTLFHEFPHPRWNSLPCFRLTDTAQLLDSQEQSIYAVHENDIVERFSK 139
Query: 160 LVMMANGHRLRLEHVRIARAVLGLPDDFEQSVVLRYPEFFRLVDADETRNKYIELVEFDP 219
++MM + ++ + + LGLPD FE++++ +YP+ F+ V A + I LV++
Sbjct: 140 VLMMMKSRTVPIQSLYPLKFDLGLPDAFEKTLIPKYPDKFQFVKAGNGVSA-IRLVDWCD 198
Query: 220 RLATCAIXXXXXXXXXXXGGDAEDIR-----FSFWINFPPGFKIGKYFKIAMWKWQRVPY 274
A A+ D + F + FP G+ K + M ++Q++PY
Sbjct: 199 EFAVSALQKSNQCESENASDQYRDFKRGKTALVFPMRFPRGYGGQKKVRFWMDEFQKLPY 258
Query: 275 WSPYEDVSGYDLRSIEAQKRMEKRAVATIHEILSLTVEKKITLERIAHFRMAMNLPKKLK 334
SPY D S D +S MEKR V +HE LSL + KK + R +NLP K
Sbjct: 259 ISPYADSSKIDPKS----DLMEKRVVGVLHEFLSLCLHKKTKRNYLRSLREELNLPHKFT 314
Query: 335 EFLLQHQGIFYVSTRGNQGKLHTVFLREAYRRGELIEPN 373
++ GIFY+S + K TV LRE Y RG+L++P+
Sbjct: 315 RIFTRYPGIFYLSLK---CKTTTVTLREGYARGKLVDPH 350
>Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9462535 | 20130731
Length = 630
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 148/297 (49%), Gaps = 39/297 (13%)
Query: 82 PSQSVPIPRLETLARRIGFTRHEAGAFILKFPHVFEIFEHPVQRILFCRLTRKAVLQIDR 141
P+ +PI L+ + + + +A +I K+P F+ + V L K ++++
Sbjct: 55 PNNQIPIQTLQKKFKTLDL-QGKALNWISKYPSCFQFHQDHV-------LLTKRMMELVH 106
Query: 142 ERHALAGYLPRA-VTSLRKLVMMANGHRLRLEHVRIARAVLGLPDDFEQSVVLRYPEFFR 200
E +L L V L KL+M++ + L + + + LG PDD+ +V +YP+ FR
Sbjct: 107 EEQSLKDSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFR 166
Query: 201 LVDADETRNKYI-ELVEFDPRLATCAIXXXXXXXXXXXGGDAEDIRFSF-----WINFPP 254
+ + R+ + EL++++P A + + ++ FS W+
Sbjct: 167 IRNESGRRSSMVVELMKWNPDFAVSEVEALAMK-------NGVEVNFSCCLPSSWVKSLE 219
Query: 255 GFKIGKYFKIAMWKWQRVPYWSPYEDVSGYDLRSIEAQKRMEKRAVATIHEILSLTVEKK 314
F+ +++ VPY SPY D G +E K MEKR V +HE+LSLT+ KK
Sbjct: 220 KFR----------EFELVPYVSPYSDPRGL----VEGSKEMEKRNVGLVHELLSLTLWKK 265
Query: 315 ITLERIAHFRMAMNLPKKLKEFLLQHQGIFYVSTRGNQGKLHTVFLREAYRRGELIE 371
I++ ++ HF+ LP K+ LL+H GIFYVS N+ +++TV LRE Y +L++
Sbjct: 266 ISIMKLGHFKREFFLPDKVNVLLLKHPGIFYVS---NKYRIYTVLLREGYVGSQLVD 319
>Medtr1g019170.4 | plant organelle RNA recognition domain protein |
HC | chr1:5720388-5724512 | 20130731
Length = 416
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 148/294 (50%), Gaps = 29/294 (9%)
Query: 82 PSQSVPIPRLETLARRIGFTRHEAGAFILKFPHVFEIFEHPVQRILFCRLTRKAVLQIDR 141
P+ +PI L+ + + + +A +I K+P F+ + V L K ++++
Sbjct: 55 PNNQIPIQTLQKKFKTLDL-QGKALNWISKYPSCFQFHQDHV-------LLTKRMMELVH 106
Query: 142 ERHALAGYLPRA-VTSLRKLVMMANGHRLRLEHVRIARAVLGLPDDFEQSVVLRYPEFFR 200
E +L L V L KL+M++ + L + + + LG PDD+ +V +YP+ FR
Sbjct: 107 EEQSLKDSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFR 166
Query: 201 LVDADETRNKYI-ELVEFDPRLATCAIXXXXXXXXXXXGGDAEDIRFSFWINFPPGFKIG 259
+ + R+ + EL++++P A + + ++ FS + +
Sbjct: 167 IRNESGRRSSMVVELMKWNPDFAVSEVEALAMK-------NGVEVNFSCCLPSSWVKSLE 219
Query: 260 KYFKIAMWKWQRVPYWSPYEDVSGYDLRSIEAQKRMEKRAVATIHEILSLTVEKKITLER 319
K+ + + VPY SPY D G +E K MEKR V +HE+LSLT+ KKI++ +
Sbjct: 220 KFHEFEL-----VPYVSPYSDPRGL----VEGSKEMEKRNVGLVHELLSLTLWKKISIMK 270
Query: 320 IAHFRMAMNLPKKLKEFLLQHQGIFYVSTRGNQGKLHTVFLREAYRRGELIEPN 373
+ HF+ LP K+ LL+H GIFYVS N+ +++TV LRE Y +L++ +
Sbjct: 271 LGHFKREFFLPDKVNVLLLKHPGIFYVS---NKYRIYTVLLREGYVGSQLVDKD 321
>Medtr1g019170.3 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 148/294 (50%), Gaps = 29/294 (9%)
Query: 82 PSQSVPIPRLETLARRIGFTRHEAGAFILKFPHVFEIFEHPVQRILFCRLTRKAVLQIDR 141
P+ +PI L+ + + + +A +I K+P F+ + V L K ++++
Sbjct: 55 PNNQIPIQTLQKKFKTLDL-QGKALNWISKYPSCFQFHQDHV-------LLTKRMMELVH 106
Query: 142 ERHALAGYLPRA-VTSLRKLVMMANGHRLRLEHVRIARAVLGLPDDFEQSVVLRYPEFFR 200
E +L L V L KL+M++ + L + + + LG PDD+ +V +YP+ FR
Sbjct: 107 EEQSLKDSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFR 166
Query: 201 LVDADETRNKYI-ELVEFDPRLATCAIXXXXXXXXXXXGGDAEDIRFSFWINFPPGFKIG 259
+ + R+ + EL++++P A + + ++ FS + +
Sbjct: 167 IRNESGRRSSMVVELMKWNPDFAVSEVEALAMK-------NGVEVNFSCCLPSSWVKSLE 219
Query: 260 KYFKIAMWKWQRVPYWSPYEDVSGYDLRSIEAQKRMEKRAVATIHEILSLTVEKKITLER 319
K+ + + VPY SPY D G +E K MEKR V +HE+LSLT+ KKI++ +
Sbjct: 220 KFHEFEL-----VPYVSPYSDPRGL----VEGSKEMEKRNVGLVHELLSLTLWKKISIMK 270
Query: 320 IAHFRMAMNLPKKLKEFLLQHQGIFYVSTRGNQGKLHTVFLREAYRRGELIEPN 373
+ HF+ LP K+ LL+H GIFYVS N+ +++TV LRE Y +L++ +
Sbjct: 271 LGHFKREFFLPDKVNVLLLKHPGIFYVS---NKYRIYTVLLREGYVGSQLVDKD 321
>Medtr1g019170.1 | plant organelle RNA recognition domain protein |
HC | chr1:5720173-5724512 | 20130731
Length = 416
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 148/294 (50%), Gaps = 29/294 (9%)
Query: 82 PSQSVPIPRLETLARRIGFTRHEAGAFILKFPHVFEIFEHPVQRILFCRLTRKAVLQIDR 141
P+ +PI L+ + + + +A +I K+P F+ + V L K ++++
Sbjct: 55 PNNQIPIQTLQKKFKTLDL-QGKALNWISKYPSCFQFHQDHV-------LLTKRMMELVH 106
Query: 142 ERHALAGYLPRA-VTSLRKLVMMANGHRLRLEHVRIARAVLGLPDDFEQSVVLRYPEFFR 200
E +L L V L KL+M++ + L + + + LG PDD+ +V +YP+ FR
Sbjct: 107 EEQSLKDSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFR 166
Query: 201 LVDADETRNKYI-ELVEFDPRLATCAIXXXXXXXXXXXGGDAEDIRFSFWINFPPGFKIG 259
+ + R+ + EL++++P A + + ++ FS + +
Sbjct: 167 IRNESGRRSSMVVELMKWNPDFAVSEVEALAMK-------NGVEVNFSCCLPSSWVKSLE 219
Query: 260 KYFKIAMWKWQRVPYWSPYEDVSGYDLRSIEAQKRMEKRAVATIHEILSLTVEKKITLER 319
K+ + + VPY SPY D G +E K MEKR V +HE+LSLT+ KKI++ +
Sbjct: 220 KFHEFEL-----VPYVSPYSDPRGL----VEGSKEMEKRNVGLVHELLSLTLWKKISIMK 270
Query: 320 IAHFRMAMNLPKKLKEFLLQHQGIFYVSTRGNQGKLHTVFLREAYRRGELIEPN 373
+ HF+ LP K+ LL+H GIFYVS N+ +++TV LRE Y +L++ +
Sbjct: 271 LGHFKREFFLPDKVNVLLLKHPGIFYVS---NKYRIYTVLLREGYVGSQLVDKD 321
>Medtr1g019170.2 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 148/294 (50%), Gaps = 29/294 (9%)
Query: 82 PSQSVPIPRLETLARRIGFTRHEAGAFILKFPHVFEIFEHPVQRILFCRLTRKAVLQIDR 141
P+ +PI L+ + + + +A +I K+P F+ + V L K ++++
Sbjct: 55 PNNQIPIQTLQKKFKTLDL-QGKALNWISKYPSCFQFHQDHV-------LLTKRMMELVH 106
Query: 142 ERHALAGYLPRA-VTSLRKLVMMANGHRLRLEHVRIARAVLGLPDDFEQSVVLRYPEFFR 200
E +L L V L KL+M++ + L + + + LG PDD+ +V +YP+ FR
Sbjct: 107 EEQSLKDSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFR 166
Query: 201 LVDADETRNKYI-ELVEFDPRLATCAIXXXXXXXXXXXGGDAEDIRFSFWINFPPGFKIG 259
+ + R+ + EL++++P A + + ++ FS + +
Sbjct: 167 IRNESGRRSSMVVELMKWNPDFAVSEVEALAMK-------NGVEVNFSCCLPSSWVKSLE 219
Query: 260 KYFKIAMWKWQRVPYWSPYEDVSGYDLRSIEAQKRMEKRAVATIHEILSLTVEKKITLER 319
K+ + + VPY SPY D G +E K MEKR V +HE+LSLT+ KKI++ +
Sbjct: 220 KFHEFEL-----VPYVSPYSDPRGL----VEGSKEMEKRNVGLVHELLSLTLWKKISIMK 270
Query: 320 IAHFRMAMNLPKKLKEFLLQHQGIFYVSTRGNQGKLHTVFLREAYRRGELIEPN 373
+ HF+ LP K+ LL+H GIFYVS N+ +++TV LRE Y +L++ +
Sbjct: 271 LGHFKREFFLPDKVNVLLLKHPGIFYVS---NKYRIYTVLLREGYVGSQLVDKD 321
>Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9464177 | 20130731
Length = 626
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 148/297 (49%), Gaps = 39/297 (13%)
Query: 82 PSQSVPIPRLETLARRIGFTRHEAGAFILKFPHVFEIFEHPVQRILFCRLTRKAVLQIDR 141
P+ +PI L+ + + + +A +I K+P F+ + V L K ++++
Sbjct: 55 PNNQIPIQTLQKKFKTLDL-QGKALNWISKYPSCFQFHQDHV-------LLTKRMMELVH 106
Query: 142 ERHALAGYLPRA-VTSLRKLVMMANGHRLRLEHVRIARAVLGLPDDFEQSVVLRYPEFFR 200
E +L L V L KL+M++ + L + + + LG PDD+ +V +YP+ FR
Sbjct: 107 EEQSLKDSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFR 166
Query: 201 LVDADETRNKYI-ELVEFDPRLATCAIXXXXXXXXXXXGGDAEDIRFSF-----WINFPP 254
+ + R+ + EL++++P A + + ++ FS W+
Sbjct: 167 IRNESGRRSSMVVELMKWNPDFAVSEVEALAMK-------NGVEVNFSCCLPSSWVKSLE 219
Query: 255 GFKIGKYFKIAMWKWQRVPYWSPYEDVSGYDLRSIEAQKRMEKRAVATIHEILSLTVEKK 314
F+ +++ VPY SPY D G +E K MEKR V +HE+LSLT+ KK
Sbjct: 220 KFR----------EFELVPYVSPYSDPRGL----VEGSKEMEKRNVGLVHELLSLTLWKK 265
Query: 315 ITLERIAHFRMAMNLPKKLKEFLLQHQGIFYVSTRGNQGKLHTVFLREAYRRGELIE 371
I++ ++ HF+ LP K+ LL+H GIFYVS N+ +++TV LRE Y +L++
Sbjct: 266 ISIMKLGHFKREFFLPDKVNVLLLKHPGIFYVS---NKYRIYTVLLREGYVGSQLVD 319
>Medtr1g098960.1 | plant organelle RNA recognition domain protein |
HC | chr1:44599463-44600719 | 20130731
Length = 418
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 148/299 (49%), Gaps = 39/299 (13%)
Query: 82 PSQSVPIPRLETLARRIGFTRHEAGAFILKFPHVFEIFEHPVQRILFCRLTRKAVLQIDR 141
P+ +PI L+ + + + +A +I K+P F+ + V L K ++++
Sbjct: 57 PNNQIPILTLQKKFKTLDL-QGKALNWISKYPSCFQFHQDHV-------LLTKRMMKLVH 108
Query: 142 ERHALAGYLPRA-VTSLRKLVMMANGHRLRLEHVRIARAVLGLPDDFEQSVVLRYPEFFR 200
E +L L V L KL+M++ + L + + + GLPDD+ +V +Y + FR
Sbjct: 109 EEQSLKDSLESVFVLRLAKLLMLSLNNCLNVMKINEIKNSFGLPDDYLIGIVAKYSDLFR 168
Query: 201 LVDADETRNKYI-ELVEFDPRLATCAIXXXXXXXXXXXGGDAEDIRFSF-----WINFPP 254
+ + R+ + EL++++P A + + ++ FS W+
Sbjct: 169 IRNESGRRSSMVVELMKWNPDFAVSEVEALAMK-------NGVEVNFSCCLPSSWVKSLE 221
Query: 255 GFKIGKYFKIAMWKWQRVPYWSPYEDVSGYDLRSIEAQKRMEKRAVATIHEILSLTVEKK 314
F+ +++ VPY SPY D R +E K MEKR + +HE+LSLT+ KK
Sbjct: 222 KFR----------EFELVPYVSPYSDPR----RLVEGSKEMEKRNLGLVHELLSLTLWKK 267
Query: 315 ITLERIAHFRMAMNLPKKLKEFLLQHQGIFYVSTRGNQGKLHTVFLREAYRRGELIEPN 373
I++ ++ HF+ LP K+ LL+H GIFYVS N+ +++TV LRE Y +L++ N
Sbjct: 268 ISIMKLGHFKREFFLPDKVNVLLLKHHGIFYVS---NKYRIYTVLLREGYVGSQLVDKN 323
>Medtr3g030020.1 | plant organelle RNA recognition domain protein |
HC | chr3:9470357-9471627 | 20130731
Length = 373
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 138/273 (50%), Gaps = 38/273 (13%)
Query: 108 FILKFPHVFEIFEHPVQRILFCRLTRKAVLQIDRERHALAGYLPRA-VTSLRKLVMMANG 166
+I K+P F+ + V L K ++++ E +L L V L KL+M +
Sbjct: 37 WISKYPSCFQFHQDHV-------LLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMFSLN 89
Query: 167 HRLRLEHVRIARAVLGLPDDFEQSVVLRYPEFFRL-VDADETRNKYIELVEFDPRLATCA 225
+ L + + + LG PDD+ +V++YP+ FR+ ++ + +EL++++P +
Sbjct: 90 NCLNVMKINEIKNSLGFPDDYLIGIVMKYPDLFRIRNESGRISSMVVELMKWNPDFSVSE 149
Query: 226 IXXXXXXXXXXXGGDAEDIRFSF-----WINFPPGFKIGKYFKIAMWKWQRVPYWSPYED 280
+ + ++ FS+ W+ F+ +++ VPY SPY D
Sbjct: 150 VAALAMK-------NGVEVNFSYCLPSSWVKSLEKFR----------EFELVPYVSPYSD 192
Query: 281 VSGYDLRSIEAQKRMEKRAVATIHEILSLTVEKKITLERIAHFRMAMNLPKKLKEFLLQH 340
G +E K MEKR V +HE+LSLT+ KKI++ ++ HF+ LP K+ LL+H
Sbjct: 193 PRGL----VEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLKH 248
Query: 341 QGIFYVSTRGNQGKLHTVFLREAYRRGELIEPN 373
GIFYVS N+ +++TV LRE Y +L++ +
Sbjct: 249 PGIFYVS---NKYRIYTVLLREGYVGSQLVDKD 278
>Medtr8g089370.2 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 157/334 (47%), Gaps = 36/334 (10%)
Query: 53 IRDHGYDNYMEVEKKTRKVLKFQNLILNEPSQSVPIPRLETLARRIGFTRH-EAGAFILK 111
++D D+ + ++ + ++I + VPI RL ++G + FI +
Sbjct: 38 VKDRTMDSVVVGKRDLKAAGILVSVIYSSSEDYVPIYRLSRHRGQLGLPDEIKLAVFIRR 97
Query: 112 FPHVF------EIFEHPVQRILFCRLTRKAVLQIDRE-----RHALAGYLPRAVTSLRKL 160
+P+VF + PV C ++I RE R + R L KL
Sbjct: 98 YPNVFVESYSLDSGGSPVP----CFGLSSEAMKIHREEVDILRENSLEFRDR----LCKL 149
Query: 161 VMMANGHRLRLEHVRIARAVLGLPDDFEQSVVLRYPEFFRLVDADETRNKYIELVEFDPR 220
+M+ L L+ + + LGLP D++ S V+ +PE F V + R ++L+ +D +
Sbjct: 150 LMLTRDWMLPLQTIDQLKWDLGLPYDYQDSFVMNHPEKFSFVRLPDVRVG-LKLLFWDDK 208
Query: 221 LATCAIXXXXXXXXXXXGGDAEDIR---FSFWINFPPGFKIGKYFKIAMWKWQRVPYWSP 277
LA + EDI+ +F ++F GF + + + +WQ++PY SP
Sbjct: 209 LAVSELEKNASLQQ-----QVEDIKNGTLAFPVSFTRGFGMKRKSMEWLREWQKLPYTSP 263
Query: 278 YEDVSGYDLRSIEAQKRMEKRAVATIHEILSLTVEKKITLERIAHFRMAMNLPKKLKEFL 337
Y D S D+R+ + EKR V HE+L LT+ K+ + +++ R + LP+K +
Sbjct: 264 YADASHLDIRTDVS----EKRVVGVFHELLHLTLHKQTERKNVSNLRRPLALPQKFTKAF 319
Query: 338 LQHQGIFYVSTRGNQGKLHTVFLREAYRRGELIE 371
+H GIFY+S + + TV LREAY GEL++
Sbjct: 320 ERHPGIFYISKKNDT---QTVVLREAYNGGELVQ 350
>Medtr8g089370.1 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 157/334 (47%), Gaps = 36/334 (10%)
Query: 53 IRDHGYDNYMEVEKKTRKVLKFQNLILNEPSQSVPIPRLETLARRIGFTRH-EAGAFILK 111
++D D+ + ++ + ++I + VPI RL ++G + FI +
Sbjct: 38 VKDRTMDSVVVGKRDLKAAGILVSVIYSSSEDYVPIYRLSRHRGQLGLPDEIKLAVFIRR 97
Query: 112 FPHVF------EIFEHPVQRILFCRLTRKAVLQIDRE-----RHALAGYLPRAVTSLRKL 160
+P+VF + PV C ++I RE R + R L KL
Sbjct: 98 YPNVFVESYSLDSGGSPVP----CFGLSSEAMKIHREEVDILRENSLEFRDR----LCKL 149
Query: 161 VMMANGHRLRLEHVRIARAVLGLPDDFEQSVVLRYPEFFRLVDADETRNKYIELVEFDPR 220
+M+ L L+ + + LGLP D++ S V+ +PE F V + R ++L+ +D +
Sbjct: 150 LMLTRDWMLPLQTIDQLKWDLGLPYDYQDSFVMNHPEKFSFVRLPDVRVG-LKLLFWDDK 208
Query: 221 LATCAIXXXXXXXXXXXGGDAEDIR---FSFWINFPPGFKIGKYFKIAMWKWQRVPYWSP 277
LA + EDI+ +F ++F GF + + + +WQ++PY SP
Sbjct: 209 LAVSELEKNASLQQ-----QVEDIKNGTLAFPVSFTRGFGMKRKSMEWLREWQKLPYTSP 263
Query: 278 YEDVSGYDLRSIEAQKRMEKRAVATIHEILSLTVEKKITLERIAHFRMAMNLPKKLKEFL 337
Y D S D+R+ + EKR V HE+L LT+ K+ + +++ R + LP+K +
Sbjct: 264 YADASHLDIRTDVS----EKRVVGVFHELLHLTLHKQTERKNVSNLRRPLALPQKFTKAF 319
Query: 338 LQHQGIFYVSTRGNQGKLHTVFLREAYRRGELIE 371
+H GIFY+S + + TV LREAY GEL++
Sbjct: 320 ERHPGIFYISKKNDT---QTVVLREAYNGGELVQ 350
>Medtr4g053720.1 | plant organelle RNA recognition domain protein |
HC | chr4:19386178-19384121 | 20130731
Length = 357
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 150/325 (46%), Gaps = 16/325 (4%)
Query: 53 IRDHGYDNYMEVEKKTRKVLKFQNLILNEPSQSVPIPRLETLARRIGFTRHEAGAFILKF 112
+RD D + EK + V+ +N I++ PS+S+ + L + + K+
Sbjct: 25 VRDDYLDTAVLKEKNLKHVISLKNHIVSSPSKSLSLYNASMLKASLNLPMITIK-LVEKY 83
Query: 113 PHVFEIFEHPVQRILFCRLTRKAVL--QIDRERHALAGYLPRAVTSLRKLVMMANGHRLR 170
HVF F+ +LT +A+ + + E H A L +L+M+A RL
Sbjct: 84 HHVFMQFQPSPGLPPRIKLTAQALALHKEEMEVHNSRTNQEDAAQRLARLLMLAGMARLP 143
Query: 171 LEHVRIARAVLGLPDDFEQSVVLRYPEFFRL-VDADETRNKYI---ELVEFDPRLATCAI 226
+ + + +GLP D+ +++ YP++F + V D K + ELV + L+ +
Sbjct: 144 IYVIEKLKWDMGLPHDYVTTLLAYYPDYFDVCVVEDPLSGKEVLALELVSWRKELSVSEL 203
Query: 227 XXXXXXXXXXXGGDAEDIRFSFWINFPPGFKIGKYFKIAMWKWQRVPYWSPYEDVSGYDL 286
DI+F ++ P F + K K + WQ +PY SPYE+ D
Sbjct: 204 EKRVMGFNYDADKRRHDIQFPMFL--PKSFALEKRVKTWVEGWQTLPYISPYENAFHLDS 261
Query: 287 RSIEAQKRMEKRAVATIHEILSLTVEKKITLERIAHFRMAMNLPKKLKEFLLQHQGIFYV 346
S +A EK VA +HE+LSL V KK E + + + L + K+ L+ H GIFY+
Sbjct: 262 NSDQA----EKWTVAILHELLSLLVSKKTESENLICYGECLGLGSRFKKALVHHPGIFYL 317
Query: 347 STRGNQGKLHTVFLREAYRRGELIE 371
S N+ + T LREAYR L++
Sbjct: 318 S---NKIRTQTAVLREAYRNEFLVK 339
>Medtr3g074730.1 | plant organelle RNA recognition domain protein |
HC | chr3:33769164-33767587 | 20130731
Length = 404
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 149/320 (46%), Gaps = 20/320 (6%)
Query: 57 GYDNYMEVEKKTRKVLKFQNLILNEPSQSVPIPRLETLARRIGFTR-HEAGAFILKFPHV 115
++ ++ E R V + +N + N+P + + L R +GF R + I + P +
Sbjct: 62 AFEQIVKRETLMRFVTRSKNYLSNQPEHVLQLDDAGKLHRELGFPRGRKIAKSIQQHPPL 121
Query: 116 FEIFEHPVQRILFCRLTRKAVLQIDRERHALAGYLPRAVTSLRKLVMMANGHRLRLEHVR 175
F + H ++ F T + E+ + V +RKL+MM+ HR+ L +
Sbjct: 122 FLTYRHTDGKMWFG-FTDLMEELLAEEKSIMESMELDRVEKVRKLLMMSRFHRISLAKIH 180
Query: 176 IARAVLGLPDDFEQSVVLRYPEFFRLVDADETRN----KYIELVEFDPRLATCAIXXXXX 231
R + G+PDDF V +YP +FR+VD + + +ELV +DP LA AI
Sbjct: 181 HVRNLFGIPDDFRDRVE-KYPNYFRIVDDKNKDDGKKVRVLELVNWDPLLAVSAIEKEFM 239
Query: 232 XXXXXXGGDAEDIRFSFWINFPPGFKIGKYFKIAMWKWQRVPYWSPYEDVSGYDLRSIEA 291
D +F+F + ++G + M +P SPY D + +D+ ++EA
Sbjct: 240 V-----NEDDAKRKFTFPVKHGKDLELGIEDERKMNLLNALPLVSPYSDGAKFDVWTLEA 294
Query: 292 QKRMEKRAVATIHEILSLTVEKKITLERIAHFRMAMNLPKKLKEFLLQHQGIFYVSTRGN 351
EK V IHE LSLT+EK+ ++ + F+ +L K L++ FY++ G
Sbjct: 295 ----EKYRVGLIHEFLSLTLEKRASIHHLVEFKEEFSLTKHTYHMLVKQPRAFYLA--GT 348
Query: 352 QGKLHTVFLREAY-RRGELI 370
+ VFL+E Y R G LI
Sbjct: 349 EMNW-VVFLKEGYDRNGVLI 367
>Medtr0153s0070.1 | plant organelle RNA recognition domain protein |
HC | scaffold0153:36398-37624 | 20130731
Length = 373
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 143/336 (42%), Gaps = 48/336 (14%)
Query: 41 SQSTAIPKKQLRIRDHGYDNYMEVEKKTRKVLKFQNLILNEPSQSVPIPRLETLARRIGF 100
+ S + + + R H + E K T K++ L+ EP +P+ L ++I
Sbjct: 2 TTSKRVQDRSKKKRVHELEAATEKWKITSKIVFLIELLEQEPEIVIPVRSLSHYRKQISL 61
Query: 101 TR-HEAGAFILKFPHVFEIFEHPVQRILFCRLTRKAVLQIDRERHALAGYLPRAVTSLRK 159
+ H F+ K P +FE+++ +L+C LT+KA + ++ + + +A + +
Sbjct: 62 PKPHRISDFLRKTPKLFELYKDR-NGVLWCGLTQKAEVLMEEHKRVIEENEDKAAEYVTR 120
Query: 160 LVMMANGHRLRLEHVRIARAVLGLPDDFEQSVVLRYPEFFRLVDADETRNKYIELVEFDP 219
L+MM+ R++L+ + R GLP DF V +YP+ FR+V +++ELV ++
Sbjct: 121 LLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLDDVEFLELVSWNS 180
Query: 220 RLATCAIXXXXXXXXXXXGGDAED---IRFSFWINFPPGFK-IGKYFKIAMWKWQRVPYW 275
A I + F + FP FK + Y+ + +Q Y
Sbjct: 181 EWAITEIEKKNKMIMEGVTETEHTPGLLSLPFPLKFPANFKRVHSYYGEKIKMFQERTYL 240
Query: 276 SPYEDVSGYDLRSIEAQKRMEKRAVATIHEILSLTVEKKITLERIAHFRMAMNLPKKLKE 335
SPY D G S+E +KRAVA +HE+LS TVEK+
Sbjct: 241 SPYADAKGLKPGSLE----FDKRAVAVMHELLSFTVEKR--------------------- 275
Query: 336 FLLQHQGIFYVSTRGNQGKLHTVFLREAYRRGELIE 371
GK +VFL EAY ELIE
Sbjct: 276 -----------------GKRFSVFLTEAYEGSELIE 294
>Medtr3g083350.1 | plant organelle RNA recognition domain protein |
HC | chr3:37619083-37621215 | 20130731
Length = 568
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 97/389 (24%), Positives = 173/389 (44%), Gaps = 48/389 (12%)
Query: 21 LIHHFI--NHNP--SFNLKFVREKSQSTAIPKKQLR------------------IRDHGY 58
L H F+ N+ P S N F+R + S+ ++L+ +RD
Sbjct: 3 LCHPFLVTNNGPVTSLNSTFLRGTTPSSFYVNRKLKTCNLKNVSVSISCSSVKTVRDRTL 62
Query: 59 DNYMEVEKKTRKVLKFQNLILNEPSQSVPIPRLETLARRIGFTRHEAG-AFILKFPHVFE 117
D ++ + + R V K + L+L++P +PI L + + + + I ++P +FE
Sbjct: 63 DRHVVMRNRIRFVQKLKTLLLSKPKHFLPIKILSKCRAYLSLHKPRSLLSMIHRYPSIFE 122
Query: 118 IFEHP----------VQRILFCRLTRKAVLQIDRERHALAGYLPRAVTSLRKLVMMANGH 167
+F P + L RLT A E + + L+KL+M+++
Sbjct: 123 LFTIPWPPTPLNATKLYPQLCVRLTPAAAALAAEELNLKSSISTVLANKLQKLLMLSSHR 182
Query: 168 RLRLEHVRIARAVLGLPDDFEQSVVLRYPEFFRLVDADETRNKYIELVEFDPRLATCAIX 227
RL L + LGLP +F + +P+ F++VD R +ELV +D LA
Sbjct: 183 RLLLAKLVHLAPDLGLPPNFRSRLCNDHPDKFKIVDTSYGR--ALELVSWDTNLAKPLPP 240
Query: 228 XXXXXXXXXXGGDAEDIRFSFWINFPPGFKIGKYFKIAMWKWQRVPYWSPYEDVSGYDLR 287
++F + G + + + + K++ +P PY + + +
Sbjct: 241 RESHSLDLIVD---RPLKFK-QLRLRKGLNLKRPHRDYLLKFEEMPEVCPYNNPAESSTK 296
Query: 288 -SIEAQKRMEKRAVATIHEILSLTVEKKITLERIAHFRMAMNLPKKLKEFLLQHQGIFYV 346
SIEA EKR A I E+L +T+EK+ ++ + HFR LP KL+ +++H +FY
Sbjct: 297 ESIEA----EKRCCAVIREVLGMTIEKRTLIDHLTHFRKEFGLPNKLRGMIVRHPELFYT 352
Query: 347 STRGNQGKLHTVFLREAY-RRGELIEPND 374
S +G + +VFL E + +G L+E ++
Sbjct: 353 SLKGQRD---SVFLVERFDEKGNLLEKDE 378
>Medtr6g033585.1 | plant organelle RNA recognition domain protein |
HC | chr6:10942710-10939006 | 20130731
Length = 173
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 48/68 (70%)
Query: 356 HTVFLREAYRRGELIEPNDXXXXXXXXXXXXXXSPRKAKVDRELVGYRRRGLDDEMGQVT 415
H REAYR+GEL+EPND SPRKA+VDREL+GYRR LDDEMGQVT
Sbjct: 59 HVRIAREAYRKGELVEPNDLYLARRKLVELVLLSPRKARVDRELIGYRRSKLDDEMGQVT 118
Query: 416 RAYVEDAC 423
RAYVEDAC
Sbjct: 119 RAYVEDAC 126
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 55/93 (59%), Gaps = 12/93 (12%)
Query: 130 RLTRKAVLQIDRERHALAGYLPRAVTSLRKLVMMANGHRLRLEHVRIARAVLGLPDDFEQ 189
+LTRKA+LQI++ER ALA + RAVT LRK++MM+NG RLRLEHVRIAR
Sbjct: 16 KLTRKAILQIEQERLALADQVERAVTRLRKMIMMSNGLRLRLEHVRIARE---------- 65
Query: 190 SVVLRYPEFFRLVDADETRNKYIELVEFDPRLA 222
R E D R K +ELV PR A
Sbjct: 66 --AYRKGELVEPNDLYLARRKLVELVLLSPRKA 96
>Medtr7g018630.1 | plant organelle RNA recognition domain protein |
HC | chr7:6083157-6084419 | 20130731
Length = 420
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 143/316 (45%), Gaps = 20/316 (6%)
Query: 54 RDHGYDNYMEVEK--KTRKVLKFQNLILNEPSQSVPIPRLETLARRIGFTRHEAGAFILK 111
+D YD+ + + + V+ +N I +P+ +PI + ++ + F+ +
Sbjct: 53 KDSYYDSIEHIHHSIQLKPVIALKNCIAQDPNGCIPISSVSKRGLQLDVPM-KVARFLRQ 111
Query: 112 FPHVFEIFEHPVQRILFCRLTRKAVLQIDR-ERHALAGYLPRAVTSLRKLVMMANGHRLR 170
+P +FE F P + RLT +A +IDR E+ + L+K+++M + L
Sbjct: 112 YPSIFEEFTGPKYNHPWFRLTPEAA-EIDRDEKRVYEESREELRSRLKKMILMTKENVLP 170
Query: 171 LEHVRIARAVLGLPDDFEQSVVLRYPEFFRLVDADETRNKYIELVEFDPRLATCAIXXXX 230
L+ ++ + LGLP DF Q + FR V+ ++ +E R+ +
Sbjct: 171 LKIIQGMQWYLGLPHDFLQHHEQNLDDSFRFVEMEDGLKGLA--IESRERVYSVMEENAM 228
Query: 231 XXXXXXXGGDAEDIRFSFWINFPPGFKIGKYFKIAMW--KWQRVPYWSPYEDVSGYDLRS 288
G E I F F+ P + KI W ++Q++PY SPY+D S D S
Sbjct: 229 KKGMYYDGSQTEAIEFPFF----PSKALRMKTKIENWLHEFQKLPYISPYDDFSNLDPNS 284
Query: 289 IEAQKRMEKRAVATIHEILSLTVEKKITLERIAHFRMAMNLPKKLKEFLLQHQGIFYVST 348
A+KR+ + +HE+LSL ++ ++ + P+K+ +H +FY+S
Sbjct: 285 DIAEKRL----IGVLHELLSLFIDHSAERRKLLCLKKYFGFPQKVHRAFERHPHMFYMSM 340
Query: 349 RGNQGKLHTVFLREAY 364
R K TV L+EAY
Sbjct: 341 R---NKTCTVILKEAY 353
>Medtr3g448960.1 | plant organelle RNA recognition domain protein |
HC | chr3:16485012-16487013 | 20130731
Length = 463
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 132/299 (44%), Gaps = 64/299 (21%)
Query: 82 PSQSVPIPRLETLARRIGFTRHEAGAFILKFPHVFEIFEHPVQRILFCRLTRKAVLQIDR 141
P+ +PI L+ + + + +A +I K+P F+ + V L K ++++
Sbjct: 57 PNNQIPILTLQKKFKTLDL-QGKALNWISKYPSCFQFHQDHV-------LLTKRMMKLVH 108
Query: 142 ERHALAGYLPRA-VTSLRKLVMMANGHRLRLEHVRIARAVLGLPDDFEQSVVLRYPEFFR 200
E +L L V L KL+M++ + L + + + GLPDD+ +V +Y + FR
Sbjct: 109 EEQSLKDSLESVFVLRLAKLLMLSLNNCLNVMKINEIKNSFGLPDDYLIGIVAKYSDLFR 168
Query: 201 LVDADETRNKYI-ELVEFDPRLATCAIXXXXXXXXXXXGGDAEDIRFSF-----WINFPP 254
+ + R+ + EL++++P A + + ++ FS W+
Sbjct: 169 IRNESGRRSSMVVELMKWNPDFAVSEVEALAMK-------NGVEVNFSCCLPSSWVKSLE 221
Query: 255 GFKIGKYFKIAMWKWQRVPYWSPYEDVSGYDLRSIEAQKRMEKRAVATIHEILSLTVEKK 314
F+ +++ VPY SPY D R +E K MEKR + +HE+LSLT+ KK
Sbjct: 222 KFR----------EFELVPYVSPYSDPR----RLVEGSKEMEKRNLGLVHELLSLTLWKK 267
Query: 315 ITLERIAHFRMAMNLPKKLKEFLLQHQGIFYVSTRGNQGKLHTVFLREAYRRGELIEPN 373
I++ ++ HF+ +G+F+ +RE Y +L++ N
Sbjct: 268 ISIMKLGHFK----------------KGVFF------------CLIREGYVGSQLVDKN 298
>Medtr8g102038.1 | plant organelle RNA recognition domain protein |
HC | chr8:42900320-42901238 | 20130731
Length = 238
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 10/165 (6%)
Query: 153 AVTSLRKLVMMANGHRLRLEHVRIARAVLGLPDDFEQSVVLRYPEFFRL-VDADETRNKY 211
A L +L+M+A R + + + +GLP D+ +++ YP++F + V D K
Sbjct: 80 AAQRLSRLLMLAGMARFPIYVIEKLKWDMGLPHDYVTTLLAHYPDYFDVCVVEDPLSGKE 139
Query: 212 I---ELVEFDPRLATCAIXXXXXXXXXXXGGDAEDIRFSFWINFPPGFKIGKYFKIAMWK 268
+ E V + L+ + DI+F ++ P F + K K +
Sbjct: 140 VLALEFVLWRKELSVSELEKRVMGFNYGADNRRYDIQFPMFL--PKSFALEKRVKTWVEG 197
Query: 269 WQRVPYWSPYEDVSGYDLRSIEAQKRMEKRAVATIHEILSLTVEK 313
WQ +PY SPYE+ D S +A EK +VA +HE+LSL V K
Sbjct: 198 WQTLPYISPYENAFHLDSNSDQA----EKWSVAILHELLSLLVSK 238