Miyakogusa Predicted Gene
- Lj0g3v0343529.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0343529.1 Non Characterized Hit- tr|I1M8Q7|I1M8Q7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.38041 PE,38.14,3e-19,no
description,Copper amine oxidase, N2/N3-terminal; DUF3223,Protein of
unknown function DUF3223,CUFF.23565.1
(168 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g038990.1 | DNA-directed RNA polymerase | HC | chr8:144590... 249 7e-67
Medtr3g102270.1 | DCL protein | HC | chr3:47131265-47137864 | 20... 108 2e-24
Medtr3g101770.1 | DCL protein | HC | chr3:46852812-46861223 | 20... 105 1e-23
Medtr5g011000.1 | DNA-directed RNA polymerase | HC | chr5:306076... 62 2e-10
Medtr3g102270.3 | DCL protein | HC | chr3:47131265-47131968 | 20... 59 3e-09
Medtr3g102270.4 | DCL protein | HC | chr3:47131265-47133258 | 20... 57 8e-09
Medtr3g102270.2 | DCL protein | HC | chr3:47131265-47137884 | 20... 57 8e-09
>Medtr8g038990.1 | DNA-directed RNA polymerase | HC |
chr8:14459096-14475944 | 20130731
Length = 2010
Score = 249 bits (637), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 116/169 (68%), Positives = 140/169 (82%), Gaps = 5/169 (2%)
Query: 1 MKHMNRPGRVPGPRLDMYSSEEQDILKDIEPIVQSIRRIMQQEGYNDGDPLGADDQRFIL 60
K+ +RP R PG R ++Y+ EEQDI+KDIEPIVQSIRRIMQ +GYNDGDPL +DQ+++L
Sbjct: 1801 WKNRSRPVRPPGQRFELYTPEEQDIMKDIEPIVQSIRRIMQLQGYNDGDPLANEDQKYVL 1860
Query: 61 ENVFEHHPEKETKMGAGIDFVMVSRHTNFQDSRCLYVVLKDGRREDFSYRKCLDSWIRKK 120
ENVFEHHP+KETKMG G+D VMVS+H+NFQDSRCLYVVLKDG++EDFSYRKCL++ +RKK
Sbjct: 1861 ENVFEHHPDKETKMGVGVDHVMVSKHSNFQDSRCLYVVLKDGKKEDFSYRKCLENLVRKK 1920
Query: 121 YPEIAESFLGKYFRKPRP---RDQTPNQTQDQTST--PVGDQPQTPVPA 164
YPE AESF GKYFRKP+P RDQTPN +QT+ P G+Q P PA
Sbjct: 1921 YPETAESFCGKYFRKPQPRVKRDQTPNPAGEQTAAPNPAGEQTAAPNPA 1969
>Medtr3g102270.1 | DCL protein | HC | chr3:47131265-47137864 |
20130731
Length = 202
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 75/118 (63%)
Query: 18 YSSEEQDILKDIEPIVQSIRRIMQQEGYNDGDPLGADDQRFILENVFEHHPEKETKMGAG 77
+ +E +I DIEPI+ + I+ Y DG L +D++ ++E + +HP E K+G G
Sbjct: 82 WKDKEDEIFNDIEPIIVLTKEILHSSKYMDGGTLTLEDEKTVVEKLLAYHPHSEDKIGCG 141
Query: 78 IDFVMVSRHTNFQDSRCLYVVLKDGRREDFSYRKCLDSWIRKKYPEIAESFLGKYFRK 135
++ +MV RH F+ SRCL+VV DG DFSY+KCL +I+KKYP AE F+ ++ ++
Sbjct: 142 LESIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYIKKKYPAHAERFIREHLKR 199
>Medtr3g101770.1 | DCL protein | HC | chr3:46852812-46861223 |
20130731
Length = 224
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 71/113 (62%)
Query: 22 EQDILKDIEPIVQSIRRIMQQEGYNDGDPLGADDQRFILENVFEHHPEKETKMGAGIDFV 81
E IL+D P+V +R I+ Y +GD L + ++ I+E + HPE + K+G GID++
Sbjct: 106 EDQILEDTVPLVGFVRTILHSGQYENGDRLSPEHEKTIVEKLLPFHPESQKKIGCGIDYI 165
Query: 82 MVSRHTNFQDSRCLYVVLKDGRREDFSYRKCLDSWIRKKYPEIAESFLGKYFR 134
V H NF SRC+++V +DG DFSY KC+ IRK YP A+SF+ ++FR
Sbjct: 166 TVGYHPNFDRSRCMFIVRQDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFR 218
>Medtr5g011000.1 | DNA-directed RNA polymerase | HC |
chr5:3060764-3075383 | 20130731
Length = 1519
Score = 62.4 bits (150), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 28 DIEPIVQSIRRIMQQEGYNDGDPLGADDQRFILENVFEHHPEKETKMGAGIDFVMVSRHT 87
DI+ + R I+ + Y + L D+ I++ V HP ++ K G+G + V H
Sbjct: 1363 DIQRLTFDARVILNK--YQIDETLSETDKLTIMK-VLHFHPRRDEKFGSGPQNIKVGWHP 1419
Query: 88 NFQDSRCLYVVLKDGRREDFSYRKCL 113
F DSRC +++ KDG EDFSYRKC+
Sbjct: 1420 EFTDSRCFFIIRKDGSVEDFSYRKCI 1445
>Medtr3g102270.3 | DCL protein | HC | chr3:47131265-47131968 |
20130731
Length = 167
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 18 YSSEEQDILKDIEPIVQSIRRIMQQEGYNDGDPLGADDQRFILENVFEHHPEKETKMGAG 77
+ +E +I DIEPI+ + I+ Y DG L +D++ ++E + +HP E K+G G
Sbjct: 82 WKDKEDEIFNDIEPIIVLTKEILHSSKYMDGGTLTLEDEKTVVEKLLAYHPHSEDKIGCG 141
Query: 78 IDFVMVSRHT 87
++ +MVS ++
Sbjct: 142 LESIMVSTYS 151
>Medtr3g102270.4 | DCL protein | HC | chr3:47131265-47133258 |
20130731
Length = 199
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 18 YSSEEQDILKDIEPIVQSIRRIMQQEGYNDGDPLGADDQRFILENVFEHHPEKETKMGAG 77
+ +E +I DIEPI+ + I+ Y DG L +D++ ++E + +HP E K+G G
Sbjct: 82 WKDKEDEIFNDIEPIIVLTKEILHSSKYMDGGTLTLEDEKTVVEKLLAYHPHSEDKIGCG 141
Query: 78 IDFVMVSRHTNFQDSRC 94
++ +M+ + Q +RC
Sbjct: 142 LESIMIDSNYEAQ-TRC 157
>Medtr3g102270.2 | DCL protein | HC | chr3:47131265-47137884 |
20130731
Length = 199
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 18 YSSEEQDILKDIEPIVQSIRRIMQQEGYNDGDPLGADDQRFILENVFEHHPEKETKMGAG 77
+ +E +I DIEPI+ + I+ Y DG L +D++ ++E + +HP E K+G G
Sbjct: 82 WKDKEDEIFNDIEPIIVLTKEILHSSKYMDGGTLTLEDEKTVVEKLLAYHPHSEDKIGCG 141
Query: 78 IDFVMVSRHTNFQDSRC 94
++ +M+ + Q +RC
Sbjct: 142 LESIMIDSNYEAQ-TRC 157