Miyakogusa Predicted Gene
- Lj0g3v0343459.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0343459.2 tr|G7JFP1|G7JFP1_MEDTR DNA-directed RNA
polymerase OS=Medicago truncatula GN=MTR_4g009200 PE=3
SV=1,41.27,0.000000000000002,coiled-coil,NULL; seg,NULL,CUFF.23566.2
(620 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g009195.1 | hypothetical protein | HC | chr4:1780631-17842... 59 2e-08
>Medtr4g009195.1 | hypothetical protein | HC | chr4:1780631-1784295
| 20130731
Length = 255
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 25/189 (13%)
Query: 7 DNWVEMAMADDSLVANLLLSFNRSESRNL----TVQWPIRHRRSQRRKS---KFARXXXX 59
DNWVE AMADD++VAN LLSF + S L TV W ++ RS+ R++ KF R
Sbjct: 4 DNWVETAMADDTIVANFLLSFTKKPSSPLYPPFTVHWNVQKPRSKLRRNHAVKFTRASPT 63
Query: 60 XXXXXXXXXXXXXXXXXXXKPLDDAG---------------SKAGDQSE-TASAXXXXXX 103
L D SK +Q+E TA
Sbjct: 64 TPLSWSAANSASTATANTAVTLADGNEASSSRFIKSVHSSRSKVDEQTEATAYKKMIRKK 123
Query: 104 XXXXXXXXXXXXXXXXSADLENQLKSLTFTVDKHRFRNQRLKSKMRMKVSVSRQSSNIVA 163
+L+++L S+ FTV++ R +N+ LK K+++ + VS++++
Sbjct: 124 RSLPELLEEEKMLLQERGNLKDKLASMNFTVERERAKNESLK-KIKLDL-VSQKATKEAR 181
Query: 164 TSLVSEKAV 172
TSLV+ KA+
Sbjct: 182 TSLVTGKAI 190