Miyakogusa Predicted Gene

Lj0g3v0343459.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0343459.1 Non Characterized Hit- tr|I1MCC1|I1MCC1_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,41.05,0.000000000000002,coiled-coil,NULL; seg,NULL,CUFF.23566.1
         (620 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g009195.1 | hypothetical protein | HC | chr4:1780631-17842...    59   2e-08

>Medtr4g009195.1 | hypothetical protein | HC | chr4:1780631-1784295
           | 20130731
          Length = 255

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 25/189 (13%)

Query: 7   DNWVEMAMADDSLVANLLLSFNRSESRNL----TVQWPIRHRRSQRRKS---KFARXXXX 59
           DNWVE AMADD++VAN LLSF +  S  L    TV W ++  RS+ R++   KF R    
Sbjct: 4   DNWVETAMADDTIVANFLLSFTKKPSSPLYPPFTVHWNVQKPRSKLRRNHAVKFTRASPT 63

Query: 60  XXXXXXXXXXXXXXXXXXXKPLDDAG---------------SKAGDQSE-TASAXXXXXX 103
                                L D                 SK  +Q+E TA        
Sbjct: 64  TPLSWSAANSASTATANTAVTLADGNEASSSRFIKSVHSSRSKVDEQTEATAYKKMIRKK 123

Query: 104 XXXXXXXXXXXXXXXXSADLENQLKSLTFTVDKHRFRNQRLKSKMRMKVSVSRQSSNIVA 163
                             +L+++L S+ FTV++ R +N+ LK K+++ + VS++++    
Sbjct: 124 RSLPELLEEEKMLLQERGNLKDKLASMNFTVERERAKNESLK-KIKLDL-VSQKATKEAR 181

Query: 164 TSLVSEKAV 172
           TSLV+ KA+
Sbjct: 182 TSLVTGKAI 190