Miyakogusa Predicted Gene

Lj0g3v0343009.1
Show Alignment: 
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0343009.1 tr|H3GSS2|H3GSS2_PHYRM tRNA pseudouridine
synthase OS=Phytophthora ramorum
GN=fgenesh1_pg.C_scaffold,34.04,0.000000000000002,PSEUDOURIDYLATE
SYNTHASE,Pseudouridine synthase I, TruA; no description,Pseudouridine
synthase I, Tr,CUFF.23514.1
         (507 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g131270.1 | tRNA pseudouridine synthase A, related protein...   806   0.0  
Medtr4g131220.1 | tRNA pseudouridine synthase A, related protein...   804   0.0  
Medtr4g131200.1 | tRNA pseudouridine synthase | HC | chr4:547442...   529   e-150
Medtr4g131205.1 | tRNA pseudouridine synthase | HC | chr4:547446...   213   4e-55
Medtr5g074640.1 | tRNA pseudouridine synthase | HC | chr5:317260...    91   2e-18
Medtr5g074620.1 | tRNA pseudouridine synthase | HC | chr5:317201...    70   4e-12
Medtr8g101250.1 | tRNA pseudouridine synthase | HC | chr8:424998...    57   5e-08
Medtr8g101250.2 | tRNA pseudouridine synthase | HC | chr8:424998...    57   5e-08

>Medtr4g131270.1 | tRNA pseudouridine synthase A, related protein |
           HC | chr4:54768312-54766231 | 20130731
          Length = 530

 Score =  806 bits (2082), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/478 (81%), Positives = 424/478 (88%), Gaps = 6/478 (1%)

Query: 28  GTKIRPKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYASGAVPDNDRGYPKRYD 87
           G+K+R KRRK+AIFFAYCGVGYQGMQKNPGAKTIEG+LEEALY SGAVP+ DRG  KRYD
Sbjct: 46  GSKVRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYD 105

Query: 88  FARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLNLNLPPQIRIFGFKRVTASYSAKKFCD 147
           +ARSARTDKGVSAVGQVVSGRFYIDPPG VDRLN NLP QIRIFGFKRVTAS+SAKKFCD
Sbjct: 106 WARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFCD 165

Query: 148 RRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVIGLVGNGKHNLEL 207
           RRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKV G+VGN K NLEL
Sbjct: 166 RRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLEL 225

Query: 208 EGVDVGAGLSSNRNDTLTSGVTEDAADPLSKGH-NQLNEELSNDNEGKVSADDMKTKTDL 266
           E VDV  G SSN+ND + SGVT+D    LSKG  N LN+E  NDNEGKVS +++ +KT  
Sbjct: 226 EAVDVENG-SSNKNDVVDSGVTKDVEVSLSKGDDNHLNKESINDNEGKVSVEEVNSKT-- 282

Query: 267 EAVVSGQDEGTPLSGGSVNNSGIIEEEKMNGEDEPNQGSRFCYGEKERERFNKILKYYVG 326
             VVS QDE  P++GGS NN GI+EEEK+N ED    GS FCYGEKERERFN ILK YVG
Sbjct: 283 --VVSDQDEVAPINGGSENNLGILEEEKVNREDTAANGSGFCYGEKERERFNNILKCYVG 340

Query: 327 THNFHNFTTRIKPEDPAAQRFIISFDANTTVAIEGMEFVKCEVVGQSFMLHQIRKMTGLA 386
           THNFHNFTTRIKPEDP+A+RFIISFDA+TTV +EGMEFVKCE+VGQSFMLHQIRKM GLA
Sbjct: 341 THNFHNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMGLA 400

Query: 387 VAIMRDCAPESLIDKALQKDVSIIVPTAPEVGLYLDECFFTSYNDKWKDTHEEVSMKAYE 446
           VAIMR+CAPESLI+KALQKDVSI VPTAPEVGLYLDECFFTSYN KWKDTHEEVSMKAYE
Sbjct: 401 VAIMRNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYE 460

Query: 447 KEAEDFKMKYIYSHIASTEQKEGTVGLWLHSLNHRNYPDLRILDEEGITDNKRFETEI 504
           KEAEDFKM+YIY HIASTE KEGTVGLWLHSLNHRNYPDLRILD EG+T++K+ E ++
Sbjct: 461 KEAEDFKMQYIYPHIASTEYKEGTVGLWLHSLNHRNYPDLRILDGEGVTNDKKVEVDM 518


>Medtr4g131220.1 | tRNA pseudouridine synthase A, related protein |
           HC | chr4:54751590-54749272 | 20130731
          Length = 530

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/478 (81%), Positives = 424/478 (88%), Gaps = 6/478 (1%)

Query: 28  GTKIRPKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYASGAVPDNDRGYPKRYD 87
           G+K+R KRRK+AIFFAYCGVGYQGMQKNPGAKTIEG+LEEALY SGAVP+ DRG  KRYD
Sbjct: 46  GSKVRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYD 105

Query: 88  FARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLNLNLPPQIRIFGFKRVTASYSAKKFCD 147
           +ARSARTDKGVSAVGQVVSGRFYIDPPG VDRLN NLP QIRIFGFKRVTAS+SAKKFCD
Sbjct: 106 WARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFCD 165

Query: 148 RRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVIGLVGNGKHNLEL 207
           RRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKV G+VGN K NLEL
Sbjct: 166 RRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLEL 225

Query: 208 EGVDVGAGLSSNRNDTLTSGVTEDAADPLSKGH-NQLNEELSNDNEGKVSADDMKTKTDL 266
           E VDV  G SSN+ND + SGVT+D    LSKG  N LN+E  NDNEGKVS +++ +KT  
Sbjct: 226 EAVDVENG-SSNKNDVVDSGVTKDVEVSLSKGDDNHLNKESINDNEGKVSVEEVNSKT-- 282

Query: 267 EAVVSGQDEGTPLSGGSVNNSGIIEEEKMNGEDEPNQGSRFCYGEKERERFNKILKYYVG 326
             VVS +DE  P++GGS NN GI+EEEK+N ED    GS FCYGEKERERFN ILK YVG
Sbjct: 283 --VVSDEDEVAPINGGSENNLGILEEEKVNREDTAANGSGFCYGEKERERFNNILKCYVG 340

Query: 327 THNFHNFTTRIKPEDPAAQRFIISFDANTTVAIEGMEFVKCEVVGQSFMLHQIRKMTGLA 386
           THNFHNFTTRIKPEDP+A+RFIISFDA+TTV +EGMEFVKCE+VGQSFMLHQIRKM GLA
Sbjct: 341 THNFHNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMGLA 400

Query: 387 VAIMRDCAPESLIDKALQKDVSIIVPTAPEVGLYLDECFFTSYNDKWKDTHEEVSMKAYE 446
           VAIMR+CAPESLI+KALQKDVSI VPTAPEVGLYLDECFFTSYN KWKDTHEEVSMKAYE
Sbjct: 401 VAIMRNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYE 460

Query: 447 KEAEDFKMKYIYSHIASTEQKEGTVGLWLHSLNHRNYPDLRILDEEGITDNKRFETEI 504
           KEAEDFKM+YIY HIASTE KEGTVGLWLHSLNHRNYPDLRILD EG+T++K+ E ++
Sbjct: 461 KEAEDFKMQYIYPHIASTEYKEGTVGLWLHSLNHRNYPDLRILDGEGVTNDKKVEVDM 518


>Medtr4g131200.1 | tRNA pseudouridine synthase | HC |
           chr4:54744263-54742890 | 20130731
          Length = 361

 Score =  529 bits (1363), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 262/337 (77%), Positives = 290/337 (86%), Gaps = 6/337 (1%)

Query: 169 ETVLASLGSENELVKCLPCSERGRKVIGLVGNGKHNLELEGVDVGAGLSSNRNDTLTSGV 228
           ETVLASLGSENELVKCLPCSERGRKV G+VGN K NLELE VDV  G SSN+ND + SGV
Sbjct: 18  ETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLELEAVDVENG-SSNKNDVVDSGV 76

Query: 229 TEDAADPLSKGH-NQLNEELSNDNEGKVSADDMKTKTDLEAVVSGQDEGTPLSGGSVNNS 287
           T+D    LSKG  N +N+E  N NEGKVS +++ +KT    VVS QDE  P++GGS NN 
Sbjct: 77  TKDVEVSLSKGDDNHINKESINYNEGKVSVEEVNSKT----VVSDQDEVAPINGGSENNL 132

Query: 288 GIIEEEKMNGEDEPNQGSRFCYGEKERERFNKILKYYVGTHNFHNFTTRIKPEDPAAQRF 347
           GI+EEEK+N ED    GS FCYGEKERERFN ILK YVGTHNFHNFTTRIKPEDP+A+RF
Sbjct: 133 GILEEEKVNREDTAANGSGFCYGEKERERFNNILKCYVGTHNFHNFTTRIKPEDPSAKRF 192

Query: 348 IISFDANTTVAIEGMEFVKCEVVGQSFMLHQIRKMTGLAVAIMRDCAPESLIDKALQKDV 407
           IISFDA+TTV +EGMEFVKCE+VGQSFMLHQIRKM GLAVAIMR+CAPESLI+KALQKDV
Sbjct: 193 IISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQKDV 252

Query: 408 SIIVPTAPEVGLYLDECFFTSYNDKWKDTHEEVSMKAYEKEAEDFKMKYIYSHIASTEQK 467
           SI VPTAPEVGLYLDECFFTSYN KWKDTHEEVSMKAYEKEAEDFKM+YIY HIASTE K
Sbjct: 253 SITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEKEAEDFKMQYIYPHIASTEYK 312

Query: 468 EGTVGLWLHSLNHRNYPDLRILDEEGITDNKRFETEI 504
           EGTVGLWLHSLNHRNYPDLRILD EG+T++K+ E ++
Sbjct: 313 EGTVGLWLHSLNHRNYPDLRILDGEGVTNDKKVEVDM 349


>Medtr4g131205.1 | tRNA pseudouridine synthase | HC |
           chr4:54744679-54744275 | 20130731
          Length = 134

 Score =  213 bits (542), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 100/117 (85%), Positives = 109/117 (93%)

Query: 28  GTKIRPKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYASGAVPDNDRGYPKRYD 87
           G+K+R KRRK+AIFFAYCGVGYQGMQKNPGAKTIEG+LEEALY SGAVP+ DRG  KRYD
Sbjct: 16  GSKVRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYD 75

Query: 88  FARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLNLNLPPQIRIFGFKRVTASYSAKK 144
           +ARSARTDKGVSAVGQVVSGRFYIDPPG VDRLN NLP QI+IFGFKRVTAS+SAK+
Sbjct: 76  WARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIQIFGFKRVTASFSAKE 132


>Medtr5g074640.1 | tRNA pseudouridine synthase | HC |
           chr5:31726081-31722203 | 20130731
          Length = 501

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 168/408 (41%), Gaps = 76/408 (18%)

Query: 34  KRRKIAIFFAYCGVGYQGMQKNP---GAKTIEGDLEEALYASGAVPDNDRGYPKRYDFAR 90
           +++K+ +  AY G  Y+G+Q         T+E +LE A++ +G + +++ G  ++  +AR
Sbjct: 55  RKKKVVMRIAYTGTNYRGLQMQRDQNSLSTVEKELESAIFKAGGIRESNLGDLEKIGWAR 114

Query: 91  SARTDKGVSAVGQVVSGRFYI-------DPPG--LVDRLNLNLPPQIRIFGFKRVTASYS 141
           S+RTDKGV ++  +V+ +  I       DP G  L + +N  LP  I++        S+ 
Sbjct: 115 SSRTDKGVHSLATMVAFKMEIPENSWNEDPFGFALANYVNSYLPCDIKVISILPAQRSFD 174

Query: 142 AKKFCDRRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVIGLVGNG 201
            +K C  R+Y YL+P   +    H   + +   +   N+++K                  
Sbjct: 175 PRKECVLRKYSYLLPADIIGIQSHSSNDEIDYHMSEFNDILK------------------ 216

Query: 202 KHNLELEGVDVGAGLSSNRNDTLTSGVTEDAADPLSKGHNQLNEELSNDN---EGKVSAD 258
               E EG         +     TS        P    H++  E LS  N   E     +
Sbjct: 217 ----EFEG--------GHPFHNYTSRSRYRRHIPRRPSHSKCGEILSAYNSEQEDSDEEE 264

Query: 259 DMKTKTDLEAVVSGQDEGTPLSGGSVNNSGIIEE-EKMNGEDEPNQG---SRFCYGEKER 314
           + K    L   +  Q++ +  SG S +   +IE   K N  D+ +     +++ Y   E 
Sbjct: 265 NFKVDEALTGNIECQNQKS--SGTSDSCEPVIETGNKGNLHDQSSSSVVRAKWLYEPDEA 322

Query: 315 ERFNKILKYYVGTHNFHNF-TTRIKPEDPAAQRFIISFDANTTVAIEGMEFVKCEVVGQS 373
           +R N        +H    F  +  K E      +I        + IEG  F         
Sbjct: 323 DRLN-------ASHFRRVFRCSSGKLEKSMGHSYI-------EIYIEGESF--------- 359

Query: 374 FMLHQIRKMTGLAVAIMRDCAPESLIDKALQKDVSIIVPTAPEVGLYL 421
            MLHQIRKM   AVA+ R   P  +I  +L K   II+P AP   L L
Sbjct: 360 -MLHQIRKMVATAVAVKRKLLPRDIITLSLSKFSRIILPLAPSEVLLL 406


>Medtr5g074620.1 | tRNA pseudouridine synthase | HC |
           chr5:31720119-31716063 | 20130731
          Length = 483

 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 12/135 (8%)

Query: 35  RRKIAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALYASGAVPDNDRGYPKRYDFARS 91
           ++K+ +   Y G  ++G+Q    +    TIE +LE A++  G + D++ G   + ++ RS
Sbjct: 56  KKKVVMRVGYIGTDFRGLQIQRNDHKLSTIEKELETAIFKVGGIRDSNYGDLDKINWGRS 115

Query: 92  ARTDKGVSAVGQVVSGRFYI-------DPPG--LVDRLNLNLPPQIRIFGFKRVTASYSA 142
           +RTDKGV ++  ++S +  I       D  G  + + +N  LP  IR+F     T  +  
Sbjct: 116 SRTDKGVHSLSTMISFKMEIPENAWKGDDYGIEMANHINSYLPNSIRVFSVLPSTKRFDP 175

Query: 143 KKFCDRRRYVYLIPV 157
           +K C  R+Y YL+P 
Sbjct: 176 RKECSMRKYSYLLPA 190



 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%)

Query: 361 GMEFVKCEVVGQSFMLHQIRKMTGLAVAIMRDCAPESLIDKALQKDVSIIVPTAPEVGLY 420
           G  +++ +V G SFMLHQIRKM G AVA+ R+  P+ +   +L K   I++P AP   L 
Sbjct: 328 GYNYIEIDVWGDSFMLHQIRKMVGTAVAVKRNSIPKDIFLLSLIKFSRIVLPIAPPEVLI 387

Query: 421 L 421
           L
Sbjct: 388 L 388


>Medtr8g101250.1 | tRNA pseudouridine synthase | HC |
           chr8:42499859-42506686 | 20130731
          Length = 435

 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 35  RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYASGAVPD-------NDRGYPKRYD 87
           R    I  +Y G  + G QK P   T++  +E +L   G   D        D+G P +  
Sbjct: 127 RFNFKILLSYHGGSFDGWQKQPNLNTVQSVVEVSL---GKFVDENKTQLLKDKGLPIQGC 183

Query: 88  FARSARTDKGVSAVGQVVSGRFY-----IDPPGLVDRLNLNLPPQIRIFGFKRVTASYSA 142
            A + RTDKGV+A+ QV S  FY     I P  + D +N   P ++R+     V+ ++  
Sbjct: 184 AAVAGRTDKGVTALQQVCS--FYTWKKDIKPREIEDAINDAAPGKLRVVSVYEVSRAFHP 241

Query: 143 KKFCDRRRYVYLIPV 157
                 RRY+Y+ P+
Sbjct: 242 NFSAKWRRYLYIFPL 256


>Medtr8g101250.2 | tRNA pseudouridine synthase | HC |
           chr8:42499876-42506683 | 20130731
          Length = 355

 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 35  RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYASGAVPD-------NDRGYPKRYD 87
           R    I  +Y G  + G QK P   T++  +E +L   G   D        D+G P +  
Sbjct: 127 RFNFKILLSYHGGSFDGWQKQPNLNTVQSVVEVSL---GKFVDENKTQLLKDKGLPIQGC 183

Query: 88  FARSARTDKGVSAVGQVVSGRFY-----IDPPGLVDRLNLNLPPQIRIFGFKRVTASYSA 142
            A + RTDKGV+A+ QV S  FY     I P  + D +N   P ++R+     V+ ++  
Sbjct: 184 AAVAGRTDKGVTALQQVCS--FYTWKKDIKPREIEDAINDAAPGKLRVVSVYEVSRAFHP 241

Query: 143 KKFCDRRRYVYLIPV 157
                 RRY+Y+ P+
Sbjct: 242 NFSAKWRRYLYIFPL 256