Miyakogusa Predicted Gene
- Lj0g3v0343009.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0343009.1 tr|H3GSS2|H3GSS2_PHYRM tRNA pseudouridine
synthase OS=Phytophthora ramorum
GN=fgenesh1_pg.C_scaffold,34.04,0.000000000000002,PSEUDOURIDYLATE
SYNTHASE,Pseudouridine synthase I, TruA; no description,Pseudouridine
synthase I, Tr,CUFF.23514.1
(507 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g131270.1 | tRNA pseudouridine synthase A, related protein... 806 0.0
Medtr4g131220.1 | tRNA pseudouridine synthase A, related protein... 804 0.0
Medtr4g131200.1 | tRNA pseudouridine synthase | HC | chr4:547442... 529 e-150
Medtr4g131205.1 | tRNA pseudouridine synthase | HC | chr4:547446... 213 4e-55
Medtr5g074640.1 | tRNA pseudouridine synthase | HC | chr5:317260... 91 2e-18
Medtr5g074620.1 | tRNA pseudouridine synthase | HC | chr5:317201... 70 4e-12
Medtr8g101250.1 | tRNA pseudouridine synthase | HC | chr8:424998... 57 5e-08
Medtr8g101250.2 | tRNA pseudouridine synthase | HC | chr8:424998... 57 5e-08
>Medtr4g131270.1 | tRNA pseudouridine synthase A, related protein |
HC | chr4:54768312-54766231 | 20130731
Length = 530
Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/478 (81%), Positives = 424/478 (88%), Gaps = 6/478 (1%)
Query: 28 GTKIRPKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYASGAVPDNDRGYPKRYD 87
G+K+R KRRK+AIFFAYCGVGYQGMQKNPGAKTIEG+LEEALY SGAVP+ DRG KRYD
Sbjct: 46 GSKVRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYD 105
Query: 88 FARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLNLNLPPQIRIFGFKRVTASYSAKKFCD 147
+ARSARTDKGVSAVGQVVSGRFYIDPPG VDRLN NLP QIRIFGFKRVTAS+SAKKFCD
Sbjct: 106 WARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFCD 165
Query: 148 RRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVIGLVGNGKHNLEL 207
RRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKV G+VGN K NLEL
Sbjct: 166 RRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLEL 225
Query: 208 EGVDVGAGLSSNRNDTLTSGVTEDAADPLSKGH-NQLNEELSNDNEGKVSADDMKTKTDL 266
E VDV G SSN+ND + SGVT+D LSKG N LN+E NDNEGKVS +++ +KT
Sbjct: 226 EAVDVENG-SSNKNDVVDSGVTKDVEVSLSKGDDNHLNKESINDNEGKVSVEEVNSKT-- 282
Query: 267 EAVVSGQDEGTPLSGGSVNNSGIIEEEKMNGEDEPNQGSRFCYGEKERERFNKILKYYVG 326
VVS QDE P++GGS NN GI+EEEK+N ED GS FCYGEKERERFN ILK YVG
Sbjct: 283 --VVSDQDEVAPINGGSENNLGILEEEKVNREDTAANGSGFCYGEKERERFNNILKCYVG 340
Query: 327 THNFHNFTTRIKPEDPAAQRFIISFDANTTVAIEGMEFVKCEVVGQSFMLHQIRKMTGLA 386
THNFHNFTTRIKPEDP+A+RFIISFDA+TTV +EGMEFVKCE+VGQSFMLHQIRKM GLA
Sbjct: 341 THNFHNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMGLA 400
Query: 387 VAIMRDCAPESLIDKALQKDVSIIVPTAPEVGLYLDECFFTSYNDKWKDTHEEVSMKAYE 446
VAIMR+CAPESLI+KALQKDVSI VPTAPEVGLYLDECFFTSYN KWKDTHEEVSMKAYE
Sbjct: 401 VAIMRNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYE 460
Query: 447 KEAEDFKMKYIYSHIASTEQKEGTVGLWLHSLNHRNYPDLRILDEEGITDNKRFETEI 504
KEAEDFKM+YIY HIASTE KEGTVGLWLHSLNHRNYPDLRILD EG+T++K+ E ++
Sbjct: 461 KEAEDFKMQYIYPHIASTEYKEGTVGLWLHSLNHRNYPDLRILDGEGVTNDKKVEVDM 518
>Medtr4g131220.1 | tRNA pseudouridine synthase A, related protein |
HC | chr4:54751590-54749272 | 20130731
Length = 530
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/478 (81%), Positives = 424/478 (88%), Gaps = 6/478 (1%)
Query: 28 GTKIRPKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYASGAVPDNDRGYPKRYD 87
G+K+R KRRK+AIFFAYCGVGYQGMQKNPGAKTIEG+LEEALY SGAVP+ DRG KRYD
Sbjct: 46 GSKVRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYD 105
Query: 88 FARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLNLNLPPQIRIFGFKRVTASYSAKKFCD 147
+ARSARTDKGVSAVGQVVSGRFYIDPPG VDRLN NLP QIRIFGFKRVTAS+SAKKFCD
Sbjct: 106 WARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFCD 165
Query: 148 RRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVIGLVGNGKHNLEL 207
RRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKV G+VGN K NLEL
Sbjct: 166 RRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLEL 225
Query: 208 EGVDVGAGLSSNRNDTLTSGVTEDAADPLSKGH-NQLNEELSNDNEGKVSADDMKTKTDL 266
E VDV G SSN+ND + SGVT+D LSKG N LN+E NDNEGKVS +++ +KT
Sbjct: 226 EAVDVENG-SSNKNDVVDSGVTKDVEVSLSKGDDNHLNKESINDNEGKVSVEEVNSKT-- 282
Query: 267 EAVVSGQDEGTPLSGGSVNNSGIIEEEKMNGEDEPNQGSRFCYGEKERERFNKILKYYVG 326
VVS +DE P++GGS NN GI+EEEK+N ED GS FCYGEKERERFN ILK YVG
Sbjct: 283 --VVSDEDEVAPINGGSENNLGILEEEKVNREDTAANGSGFCYGEKERERFNNILKCYVG 340
Query: 327 THNFHNFTTRIKPEDPAAQRFIISFDANTTVAIEGMEFVKCEVVGQSFMLHQIRKMTGLA 386
THNFHNFTTRIKPEDP+A+RFIISFDA+TTV +EGMEFVKCE+VGQSFMLHQIRKM GLA
Sbjct: 341 THNFHNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMGLA 400
Query: 387 VAIMRDCAPESLIDKALQKDVSIIVPTAPEVGLYLDECFFTSYNDKWKDTHEEVSMKAYE 446
VAIMR+CAPESLI+KALQKDVSI VPTAPEVGLYLDECFFTSYN KWKDTHEEVSMKAYE
Sbjct: 401 VAIMRNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYE 460
Query: 447 KEAEDFKMKYIYSHIASTEQKEGTVGLWLHSLNHRNYPDLRILDEEGITDNKRFETEI 504
KEAEDFKM+YIY HIASTE KEGTVGLWLHSLNHRNYPDLRILD EG+T++K+ E ++
Sbjct: 461 KEAEDFKMQYIYPHIASTEYKEGTVGLWLHSLNHRNYPDLRILDGEGVTNDKKVEVDM 518
>Medtr4g131200.1 | tRNA pseudouridine synthase | HC |
chr4:54744263-54742890 | 20130731
Length = 361
Score = 529 bits (1363), Expect = e-150, Method: Compositional matrix adjust.
Identities = 262/337 (77%), Positives = 290/337 (86%), Gaps = 6/337 (1%)
Query: 169 ETVLASLGSENELVKCLPCSERGRKVIGLVGNGKHNLELEGVDVGAGLSSNRNDTLTSGV 228
ETVLASLGSENELVKCLPCSERGRKV G+VGN K NLELE VDV G SSN+ND + SGV
Sbjct: 18 ETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLELEAVDVENG-SSNKNDVVDSGV 76
Query: 229 TEDAADPLSKGH-NQLNEELSNDNEGKVSADDMKTKTDLEAVVSGQDEGTPLSGGSVNNS 287
T+D LSKG N +N+E N NEGKVS +++ +KT VVS QDE P++GGS NN
Sbjct: 77 TKDVEVSLSKGDDNHINKESINYNEGKVSVEEVNSKT----VVSDQDEVAPINGGSENNL 132
Query: 288 GIIEEEKMNGEDEPNQGSRFCYGEKERERFNKILKYYVGTHNFHNFTTRIKPEDPAAQRF 347
GI+EEEK+N ED GS FCYGEKERERFN ILK YVGTHNFHNFTTRIKPEDP+A+RF
Sbjct: 133 GILEEEKVNREDTAANGSGFCYGEKERERFNNILKCYVGTHNFHNFTTRIKPEDPSAKRF 192
Query: 348 IISFDANTTVAIEGMEFVKCEVVGQSFMLHQIRKMTGLAVAIMRDCAPESLIDKALQKDV 407
IISFDA+TTV +EGMEFVKCE+VGQSFMLHQIRKM GLAVAIMR+CAPESLI+KALQKDV
Sbjct: 193 IISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQKDV 252
Query: 408 SIIVPTAPEVGLYLDECFFTSYNDKWKDTHEEVSMKAYEKEAEDFKMKYIYSHIASTEQK 467
SI VPTAPEVGLYLDECFFTSYN KWKDTHEEVSMKAYEKEAEDFKM+YIY HIASTE K
Sbjct: 253 SITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEKEAEDFKMQYIYPHIASTEYK 312
Query: 468 EGTVGLWLHSLNHRNYPDLRILDEEGITDNKRFETEI 504
EGTVGLWLHSLNHRNYPDLRILD EG+T++K+ E ++
Sbjct: 313 EGTVGLWLHSLNHRNYPDLRILDGEGVTNDKKVEVDM 349
>Medtr4g131205.1 | tRNA pseudouridine synthase | HC |
chr4:54744679-54744275 | 20130731
Length = 134
Score = 213 bits (542), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 100/117 (85%), Positives = 109/117 (93%)
Query: 28 GTKIRPKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYASGAVPDNDRGYPKRYD 87
G+K+R KRRK+AIFFAYCGVGYQGMQKNPGAKTIEG+LEEALY SGAVP+ DRG KRYD
Sbjct: 16 GSKVRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYD 75
Query: 88 FARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLNLNLPPQIRIFGFKRVTASYSAKK 144
+ARSARTDKGVSAVGQVVSGRFYIDPPG VDRLN NLP QI+IFGFKRVTAS+SAK+
Sbjct: 76 WARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIQIFGFKRVTASFSAKE 132
>Medtr5g074640.1 | tRNA pseudouridine synthase | HC |
chr5:31726081-31722203 | 20130731
Length = 501
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 103/408 (25%), Positives = 168/408 (41%), Gaps = 76/408 (18%)
Query: 34 KRRKIAIFFAYCGVGYQGMQKNP---GAKTIEGDLEEALYASGAVPDNDRGYPKRYDFAR 90
+++K+ + AY G Y+G+Q T+E +LE A++ +G + +++ G ++ +AR
Sbjct: 55 RKKKVVMRIAYTGTNYRGLQMQRDQNSLSTVEKELESAIFKAGGIRESNLGDLEKIGWAR 114
Query: 91 SARTDKGVSAVGQVVSGRFYI-------DPPG--LVDRLNLNLPPQIRIFGFKRVTASYS 141
S+RTDKGV ++ +V+ + I DP G L + +N LP I++ S+
Sbjct: 115 SSRTDKGVHSLATMVAFKMEIPENSWNEDPFGFALANYVNSYLPCDIKVISILPAQRSFD 174
Query: 142 AKKFCDRRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVIGLVGNG 201
+K C R+Y YL+P + H + + + N+++K
Sbjct: 175 PRKECVLRKYSYLLPADIIGIQSHSSNDEIDYHMSEFNDILK------------------ 216
Query: 202 KHNLELEGVDVGAGLSSNRNDTLTSGVTEDAADPLSKGHNQLNEELSNDN---EGKVSAD 258
E EG + TS P H++ E LS N E +
Sbjct: 217 ----EFEG--------GHPFHNYTSRSRYRRHIPRRPSHSKCGEILSAYNSEQEDSDEEE 264
Query: 259 DMKTKTDLEAVVSGQDEGTPLSGGSVNNSGIIEE-EKMNGEDEPNQG---SRFCYGEKER 314
+ K L + Q++ + SG S + +IE K N D+ + +++ Y E
Sbjct: 265 NFKVDEALTGNIECQNQKS--SGTSDSCEPVIETGNKGNLHDQSSSSVVRAKWLYEPDEA 322
Query: 315 ERFNKILKYYVGTHNFHNF-TTRIKPEDPAAQRFIISFDANTTVAIEGMEFVKCEVVGQS 373
+R N +H F + K E +I + IEG F
Sbjct: 323 DRLN-------ASHFRRVFRCSSGKLEKSMGHSYI-------EIYIEGESF--------- 359
Query: 374 FMLHQIRKMTGLAVAIMRDCAPESLIDKALQKDVSIIVPTAPEVGLYL 421
MLHQIRKM AVA+ R P +I +L K II+P AP L L
Sbjct: 360 -MLHQIRKMVATAVAVKRKLLPRDIITLSLSKFSRIILPLAPSEVLLL 406
>Medtr5g074620.1 | tRNA pseudouridine synthase | HC |
chr5:31720119-31716063 | 20130731
Length = 483
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 12/135 (8%)
Query: 35 RRKIAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALYASGAVPDNDRGYPKRYDFARS 91
++K+ + Y G ++G+Q + TIE +LE A++ G + D++ G + ++ RS
Sbjct: 56 KKKVVMRVGYIGTDFRGLQIQRNDHKLSTIEKELETAIFKVGGIRDSNYGDLDKINWGRS 115
Query: 92 ARTDKGVSAVGQVVSGRFYI-------DPPG--LVDRLNLNLPPQIRIFGFKRVTASYSA 142
+RTDKGV ++ ++S + I D G + + +N LP IR+F T +
Sbjct: 116 SRTDKGVHSLSTMISFKMEIPENAWKGDDYGIEMANHINSYLPNSIRVFSVLPSTKRFDP 175
Query: 143 KKFCDRRRYVYLIPV 157
+K C R+Y YL+P
Sbjct: 176 RKECSMRKYSYLLPA 190
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 361 GMEFVKCEVVGQSFMLHQIRKMTGLAVAIMRDCAPESLIDKALQKDVSIIVPTAPEVGLY 420
G +++ +V G SFMLHQIRKM G AVA+ R+ P+ + +L K I++P AP L
Sbjct: 328 GYNYIEIDVWGDSFMLHQIRKMVGTAVAVKRNSIPKDIFLLSLIKFSRIVLPIAPPEVLI 387
Query: 421 L 421
L
Sbjct: 388 L 388
>Medtr8g101250.1 | tRNA pseudouridine synthase | HC |
chr8:42499859-42506686 | 20130731
Length = 435
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 35 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYASGAVPD-------NDRGYPKRYD 87
R I +Y G + G QK P T++ +E +L G D D+G P +
Sbjct: 127 RFNFKILLSYHGGSFDGWQKQPNLNTVQSVVEVSL---GKFVDENKTQLLKDKGLPIQGC 183
Query: 88 FARSARTDKGVSAVGQVVSGRFY-----IDPPGLVDRLNLNLPPQIRIFGFKRVTASYSA 142
A + RTDKGV+A+ QV S FY I P + D +N P ++R+ V+ ++
Sbjct: 184 AAVAGRTDKGVTALQQVCS--FYTWKKDIKPREIEDAINDAAPGKLRVVSVYEVSRAFHP 241
Query: 143 KKFCDRRRYVYLIPV 157
RRY+Y+ P+
Sbjct: 242 NFSAKWRRYLYIFPL 256
>Medtr8g101250.2 | tRNA pseudouridine synthase | HC |
chr8:42499876-42506683 | 20130731
Length = 355
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 35 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYASGAVPD-------NDRGYPKRYD 87
R I +Y G + G QK P T++ +E +L G D D+G P +
Sbjct: 127 RFNFKILLSYHGGSFDGWQKQPNLNTVQSVVEVSL---GKFVDENKTQLLKDKGLPIQGC 183
Query: 88 FARSARTDKGVSAVGQVVSGRFY-----IDPPGLVDRLNLNLPPQIRIFGFKRVTASYSA 142
A + RTDKGV+A+ QV S FY I P + D +N P ++R+ V+ ++
Sbjct: 184 AAVAGRTDKGVTALQQVCS--FYTWKKDIKPREIEDAINDAAPGKLRVVSVYEVSRAFHP 241
Query: 143 KKFCDRRRYVYLIPV 157
RRY+Y+ P+
Sbjct: 242 NFSAKWRRYLYIFPL 256