Miyakogusa Predicted Gene

Lj0g3v0342609.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0342609.1 Non Characterized Hit- tr|I1K4D0|I1K4D0_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,94.27,0,DNA
DAMAGE-BINDING PROTEIN 1 (DAMAGE-SPECIFIC DNA-BINDING PROTEIN
1)(UV-DAMAGED DNA-BINDING FACTOR),,CUFF.23486.1
         (157 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g089380.1 | damaged DNA-binding protein 1A | HC | chr8:371...   310   3e-85

>Medtr8g089380.1 | damaged DNA-binding protein 1A | HC |
           chr8:37153843-37142364 | 20130731
          Length = 1089

 Score =  310 bits (795), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 142/157 (90%), Positives = 151/157 (96%)

Query: 1   MSIWNYVVTAHKPTNVTHSCVGNFTGPQDLNLIVAKCTRIEIHLLSPQGLQPMLDVPIYG 60
           MSIWNYVVTAHKPTNVTHSCVGNFT PQDLNLI+AKCTRIEIHLL+ QGLQ +LDVP+YG
Sbjct: 1   MSIWNYVVTAHKPTNVTHSCVGNFTSPQDLNLILAKCTRIEIHLLTAQGLQSILDVPLYG 60

Query: 61  RIATLELFRPHGEAQDYLFVATKRYKFCVLQWDPETSELVTRAMGDVSDRIGRPTDNGQI 120
           RIATLELFRPHGE QD+LF+AT+RYKFCVLQWD E SELVTR+MGDVSDRIGRPTDNGQI
Sbjct: 61  RIATLELFRPHGETQDFLFIATERYKFCVLQWDTEKSELVTRSMGDVSDRIGRPTDNGQI 120

Query: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFSIR 157
           GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAF+IR
Sbjct: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIR 157