Miyakogusa Predicted Gene

Lj0g3v0342359.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0342359.2 tr|F2E9B9|F2E9B9_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2
SV=1,54.74,4e-19,coiled-coil,NULL; seg,NULL,CUFF.23459.2
         (98 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g006550.3 | transmembrane protein, putative | HC | chr4:67...   110   4e-25
Medtr4g006550.1 | transmembrane protein, putative | HC | chr4:67...   110   4e-25
Medtr4g006550.2 | transmembrane protein, putative | HC | chr4:67...   110   4e-25
Medtr8g060830.1 | transmembrane protein, putative | HC | chr8:21...   108   1e-24

>Medtr4g006550.3 | transmembrane protein, putative | HC |
           chr4:673238-675849 | 20130731
          Length = 262

 Score =  110 bits (274), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 65/98 (66%), Gaps = 1/98 (1%)

Query: 1   MMTAVKMLFTEPPQKKKFGFDFHLVQFFFACMPSLAVYLVAQYARYDMXXXXXXXXXXXX 60
           MMTA+KMLFT+PP+KKKFGFDFHLVQFFFACMPSLAVYLVAQY RY +            
Sbjct: 62  MMTALKMLFTDPPKKKKFGFDFHLVQFFFACMPSLAVYLVAQYTRYAIRRMEAEVEEKKK 121

Query: 61  XXXXXXXXXXXXXXXLNPPEEREAKSDPQLMEVKVRLE 98
                          LNPPEE++ K DPQL E+K RLE
Sbjct: 122 QKEEEEAKEKEKELELNPPEEKD-KPDPQLSEMKERLE 158


>Medtr4g006550.1 | transmembrane protein, putative | HC |
           chr4:671771-675853 | 20130731
          Length = 262

 Score =  110 bits (274), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 65/98 (66%), Gaps = 1/98 (1%)

Query: 1   MMTAVKMLFTEPPQKKKFGFDFHLVQFFFACMPSLAVYLVAQYARYDMXXXXXXXXXXXX 60
           MMTA+KMLFT+PP+KKKFGFDFHLVQFFFACMPSLAVYLVAQY RY +            
Sbjct: 62  MMTALKMLFTDPPKKKKFGFDFHLVQFFFACMPSLAVYLVAQYTRYAIRRMEAEVEEKKK 121

Query: 61  XXXXXXXXXXXXXXXLNPPEEREAKSDPQLMEVKVRLE 98
                          LNPPEE++ K DPQL E+K RLE
Sbjct: 122 QKEEEEAKEKEKELELNPPEEKD-KPDPQLSEMKERLE 158


>Medtr4g006550.2 | transmembrane protein, putative | HC |
           chr4:671771-675853 | 20130731
          Length = 262

 Score =  110 bits (274), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 65/98 (66%), Gaps = 1/98 (1%)

Query: 1   MMTAVKMLFTEPPQKKKFGFDFHLVQFFFACMPSLAVYLVAQYARYDMXXXXXXXXXXXX 60
           MMTA+KMLFT+PP+KKKFGFDFHLVQFFFACMPSLAVYLVAQY RY +            
Sbjct: 62  MMTALKMLFTDPPKKKKFGFDFHLVQFFFACMPSLAVYLVAQYTRYAIRRMEAEVEEKKK 121

Query: 61  XXXXXXXXXXXXXXXLNPPEEREAKSDPQLMEVKVRLE 98
                          LNPPEE++ K DPQL E+K RLE
Sbjct: 122 QKEEEEAKEKEKELELNPPEEKD-KPDPQLSEMKERLE 158


>Medtr8g060830.1 | transmembrane protein, putative | HC |
           chr8:21266127-21262722 | 20130731
          Length = 262

 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 66/98 (67%), Gaps = 1/98 (1%)

Query: 1   MMTAVKMLFTEPPQKKKFGFDFHLVQFFFACMPSLAVYLVAQYARYDMXXXXXXXXXXXX 60
           MMTA+KMLFT+PP+KKKFGFDFHLVQFFFACMPSLAVYLVAQYARY++            
Sbjct: 62  MMTALKMLFTDPPKKKKFGFDFHLVQFFFACMPSLAVYLVAQYARYEIRRMEAEVEEKKK 121

Query: 61  XXXXXXXXXXXXXXXLNPPEEREAKSDPQLMEVKVRLE 98
                          L PPEE++ K DPQL E+K RLE
Sbjct: 122 QKEEEEAKEKEKELELYPPEEKD-KPDPQLSEMKERLE 158