Miyakogusa Predicted Gene

Lj0g3v0342229.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0342229.1 tr|G7JJ22|G7JJ22_MEDTR Helicase swr1 OS=Medicago
truncatula GN=MTR_4g118720 PE=4 SV=1,61.66,0,coiled-coil,NULL;
HSA,Helicase/SANT-associated, DNA binding; seg,NULL; no
description,Glutamine-Leuc,CUFF.23470.1
         (882 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g118720.1 | SNF2 family amine-terminal protein | HC | chr4...  1007   0.0  
Medtr1g105050.1 | chromatin remodeling factor, putative | HC | c...    50   8e-06

>Medtr4g118720.1 | SNF2 family amine-terminal protein | HC |
           chr4:49190490-49169826 | 20130731
          Length = 3282

 Score = 1007 bits (2603), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/973 (57%), Positives = 654/973 (67%), Gaps = 121/973 (12%)

Query: 1   MDSSQNVEMEAAKFLHKLIQDSKDEPAKLATKLHVILQHMKSSGKEHTMPYQVISRAMET 60
           M S QNVE+EAAKFLHKLIQDSKDEP KLATKL+VILQHMKSSGKEH+MPYQVISRAMET
Sbjct: 18  MASPQNVELEAAKFLHKLIQDSKDEPVKLATKLYVILQHMKSSGKEHSMPYQVISRAMET 77

Query: 61  VINQHSLDIEALKSSRLPLSGSAQIGSS-QAVGVAKDSRAGLAENEMPKM--VASGRPPV 117
           VINQH LDIEALKSSRLPL+G  QIGSS QAVG AKDSR  LAE+E PKM    SGRPP+
Sbjct: 78  VINQHGLDIEALKSSRLPLTGVPQIGSSSQAVGGAKDSRPSLAESEAPKMEPFTSGRPPI 137

Query: 118 APSSGATDFYQGSVTQRSGQSFDPESPSSLDSRSAHSQSQDQHDAAKLDKQVKQKDGKKA 177
           AP+ GA D+YQGSV QRS QSFD ESPSSLDSRSA+S SQD+ D    DKQ  QKDGKK 
Sbjct: 138 APTGGAPDYYQGSVAQRSNQSFDQESPSSLDSRSANSLSQDKRDTVIWDKQANQKDGKKG 197

Query: 178 TSKRKRGDTSSPVEPHTDVPSQLDSQNT-VNTRKGKMM-TESSDGLPVKSGDLTKFNMVP 235
            +KRKRGD++SPVE H D  S ++ +NT VNTRKGKM  TE SDG+P KSG++T F++VP
Sbjct: 198 NTKRKRGDSTSPVEMHVDSSSLVEPRNTGVNTRKGKMTKTEPSDGIPAKSGEMTNFSVVP 257

Query: 236 SSIQMEHFPALSGSMQTMHSAN-------------------------------------- 257
           ++ QME+    SG+M+TM  AN                                      
Sbjct: 258 NNSQMENISTFSGNMKTMLRANPEGHHLLAKQTDSTNIGNPTGRAPNSKYPEDLEVSSAH 317

Query: 258 -----QEGAYAKVHGGLVVATTSQPMSEPVFSSSVQYGSVLENDGGSSTSLTDRHKIAQI 312
                Q+GAYA+VHGG+VV      M+EPVFSSS+QYG  L  DGGSS +L D H+I+QI
Sbjct: 318 IAPGKQQGAYARVHGGMVVPANVSAMNEPVFSSSMQYGVPLNRDGGSSNTLADGHQISQI 377

Query: 313 GRQGSFSETTALRQGFPPKDTGKSAVSAVPESSSTPFKEQQLKQLRAQCLVFLAFRNNLA 372
           GRQ S SE T LRQG PP+DTGKS V A   SS+ PFKE QLKQLRAQCLVFLAFRN L 
Sbjct: 378 GRQNSGSEMTMLRQGVPPRDTGKSPVPAA--SSTMPFKENQLKQLRAQCLVFLAFRNGLP 435

Query: 373 PKKLHLEIALGTSFSRE---GKDPIDHKXXXXXXXXXXXXXXVMMPFGCLNNMRQSDSNP 429
           PKKLHLE+A GT F+RE    KD  D K              V+MPFG  +N+R +D NP
Sbjct: 436 PKKLHLEVAFGTFFAREDGSNKDSNDPKGKSQSFSEPGNMPGVIMPFGSSSNLRPTDKNP 495

Query: 430 SGPSSTGKTVEADSYSKGTESPRVMEDNGIL-------SEERKHLLAAKKGEFEKQIQEK 482
           SG SS GK +EA+S+ KGT+  R++ED G L       SE+ KHL  A K + E++IQE+
Sbjct: 496 SG-SSAGKFLEAESFMKGTDGTRLLEDKGNLHSDIQTPSEDSKHL--AAKRDVERRIQER 552

Query: 483 VAAQASLTTSFQQ-DSSS----------LNKQTN----------PEISG---WTGFASPN 518
           VAAQ+S  T +QQ DSSS          L+   N          P + G   WTGFA P+
Sbjct: 553 VAAQSSSATPYQQKDSSSSRGIVVGNSNLDDSDNGILTAGRANQPSVVGPNNWTGFAGPS 612

Query: 519 EAAKGSPQ----------------PSQFLNIVNNGGSRNHDP------FSLKDHLKPIAG 556
           EA+KG PQ                P+ F ++VN+ GS N +       +SLK+H KP+ G
Sbjct: 613 EASKGPPQVSTSQHELPIERRENIPTHFQSVVNSRGSWNPNSVNHLTSYSLKEHWKPVPG 672

Query: 557 IDVHSQGAMMMQDTNSMIKYVSSDGFKSVPVDGTSRQEGNESQLSSNLPPPKYTMSERWI 616
           ID +  G +   + N + K VS++            Q GN+   S++LP  K+TMSERWI
Sbjct: 673 IDSNHHGGVTTMNGNVLGKNVSAE------------QGGNDKLASADLPSKKFTMSERWI 720

Query: 617 MDQQRNRLLVEQNWVHKQQKTKQRMVTSFLKLKENVNSSEDISNKTKSVIEXXXXXXXXX 676
           MDQQ+ RLLV+QNW+ KQQK K+RM T F KLKENV+S EDIS KTKSVIE         
Sbjct: 721 MDQQKKRLLVQQNWMQKQQKAKERMTTCFHKLKENVSSCEDISAKTKSVIELKKLQLLDL 780

Query: 677 XXXXXSDFLNDFFKPITTEMEHLKSIKKHRHGRRVKQLEKIEHKMKDXXXXXXXXXXXXF 736
                SDFLNDFFKP+T+E+EHLKS KK+RHGRRVKQLE+ E KMK+            F
Sbjct: 781 QRRLRSDFLNDFFKPVTSELEHLKSFKKNRHGRRVKQLERYELKMKEERQKRIRERQKEF 840

Query: 737 FSEIEVHKERLDDVFKMKRERWKGLNRYVKEFHKRKERIHREKIDRIQREKINLLKINDV 796
           F+EIEVHKE+LDDVFK+KRERWKG+NRYVKEFHKRKERIHREKIDRIQREKINLLKINDV
Sbjct: 841 FTEIEVHKEKLDDVFKIKRERWKGVNRYVKEFHKRKERIHREKIDRIQREKINLLKINDV 900

Query: 797 EGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLREAKAAAGPFEYDVDEARSGSFXXXXX 856
           EGYLRMVQDAKSDRVKQLLK TEKYLQKLGSKL+EAKAAA     DVDE  S +F     
Sbjct: 901 EGYLRMVQDAKSDRVKQLLKATEKYLQKLGSKLQEAKAAAERSGQDVDEGGSTNFLENSE 960

Query: 857 XXXXXXXXTDQAK 869
                   +DQAK
Sbjct: 961 TTLVDEDESDQAK 973


>Medtr1g105050.1 | chromatin remodeling factor, putative | HC |
           chr1:47349899-47341180 | 20130731
          Length = 1083

 Score = 50.4 bits (119), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 11/132 (8%)

Query: 702 IKKHRHGRRVKQLEKIEHKMKDXXXXXXXXXXXXFFSEIEVHKERLDDVFKMKRERWKGL 761
           ++K R   R+ +LE++E                 FF+EI      L    +   +R K  
Sbjct: 173 LRKRRDSERLSRLEEVE-------KNNIETTKRRFFAEILNSVRELQLQIQASLKRRKQR 225

Query: 762 NRYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKY 821
           N  ++ +H R+    R++  R ++ +   LK +D E Y+RMV+++K++R+  LL+ET K 
Sbjct: 226 NDGIQAWHGRQ----RQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTVLLEETNKL 281

Query: 822 LQKLGSKLREAK 833
           L  LG+ ++  K
Sbjct: 282 LVNLGAAVQRQK 293