Miyakogusa Predicted Gene

Lj0g3v0342059.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0342059.1 tr|G7J5Q3|G7J5Q3_MEDTR Thylakoidal processing
peptidase OS=Medicago truncatula GN=MTR_3g100960 PE=3
,85.11,0.00000000000006,
,gene.Ljchr0_pseudomol_20120828.path1.gene35454.1
         (47 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g100960.1 | processing peptidase | HC | chr3:46459060-4646...    82   1e-16
Medtr3g100960.3 | processing peptidase | HC | chr3:46459060-4646...    82   2e-16
Medtr3g100960.2 | processing peptidase | HC | chr3:46459060-4646...    82   2e-16
Medtr2g059220.1 | processing peptidase | HC | chr2:24452161-2445...    75   1e-14

>Medtr3g100960.1 | processing peptidase | HC |
          chr3:46459060-46461865 | 20130731
          Length = 375

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/47 (85%), Positives = 41/47 (87%)

Query: 1  MANRATFSFSRYVAQNLVSSAGVRVANSRCVQECWILSRFFGTNQKP 47
          MA R TFSFS YVAQNLVSSAGVRVANSRCVQEC ILSR FG+N KP
Sbjct: 1  MAIRVTFSFSGYVAQNLVSSAGVRVANSRCVQECCILSRLFGSNPKP 47


>Medtr3g100960.3 | processing peptidase | HC |
          chr3:46459060-46461840 | 20130731
          Length = 334

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/47 (85%), Positives = 41/47 (87%)

Query: 1  MANRATFSFSRYVAQNLVSSAGVRVANSRCVQECWILSRFFGTNQKP 47
          MA R TFSFS YVAQNLVSSAGVRVANSRCVQEC ILSR FG+N KP
Sbjct: 1  MAIRVTFSFSGYVAQNLVSSAGVRVANSRCVQECCILSRLFGSNPKP 47


>Medtr3g100960.2 | processing peptidase | HC |
          chr3:46459060-46461769 | 20130731
          Length = 334

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/47 (85%), Positives = 41/47 (87%)

Query: 1  MANRATFSFSRYVAQNLVSSAGVRVANSRCVQECWILSRFFGTNQKP 47
          MA R TFSFS YVAQNLVSSAGVRVANSRCVQEC ILSR FG+N KP
Sbjct: 1  MAIRVTFSFSGYVAQNLVSSAGVRVANSRCVQECCILSRLFGSNPKP 47


>Medtr2g059220.1 | processing peptidase | HC |
          chr2:24452161-24453195 | 20130731
          Length = 344

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 39/47 (82%)

Query: 1  MANRATFSFSRYVAQNLVSSAGVRVANSRCVQECWILSRFFGTNQKP 47
          MA RATFSFS YVAQ LVSSA VRVAN R V EC ILSRFFG+NQKP
Sbjct: 1  MAIRATFSFSGYVAQTLVSSASVRVANPRGVHECCILSRFFGSNQKP 47