Miyakogusa Predicted Gene

Lj0g3v0341959.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0341959.1 tr|G7LIC7|G7LIC7_MEDTR HAT family dimerization
domain containing protein OS=Medicago truncatula
GN=M,61.6,0,DUF659,Domain of unknown function DUF659;
Dimer_Tnp_hAT,HAT dimerisation; Ribonuclease
H-like,Ribonu,CUFF.23430.1
         (404 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g028350.1 | hypothetical protein | LC | chr3:8989418-89888...   100   3e-21
Medtr7g105550.1 | hypothetical protein | HC | chr7:42807417-4280...    64   3e-10

>Medtr3g028350.1 | hypothetical protein | LC | chr3:8989418-8988833
           | 20130731
          Length = 139

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 64/106 (60%), Gaps = 25/106 (23%)

Query: 199 KTREGKHVEELVGNNQFWKEVYICLRGALPLIKVLRDVDSDEKPAMGFIYEAMDQAQETI 258
           K  E K ++ ++ +  FWK++ ICLRG              +KPAM FIYEAMDQA++  
Sbjct: 27  KKWERKALKNMILDKVFWKDIVICLRGI-------------KKPAMRFIYEAMDQAKD-- 71

Query: 259 QSDFHGVKKWYQPLWNIIDARWDKQLHRPLHAAGYYVNPQLHYAPG 304
                     Y+P+ NIID RWDK  HRPLH A YY+NPQLHYAPG
Sbjct: 72  ----------YKPILNIIDDRWDKIFHRPLHVAAYYLNPQLHYAPG 107


>Medtr7g105550.1 | hypothetical protein | HC |
           chr7:42807417-42807019 | 20130731
          Length = 96

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 42/67 (62%)

Query: 163 MTRFATSYITLGCLYEHKNSLKRMFSSKEWYKTPYSKTREGKHVEELVGNNQFWKEVYIC 222
           MTRFA SY+ L CL+ +  +L  MF+ KEW     +K+++G  VE+ V +N FWK V  C
Sbjct: 1   MTRFAASYLILECLHYNYRALIIMFTLKEWKSGKLAKSKDGIIVEKAVKDNVFWKNVMNC 60

Query: 223 LRGALPL 229
           +RG   L
Sbjct: 61  MRGVFLL 67