Miyakogusa Predicted Gene

Lj0g3v0341589.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0341589.1 Non Characterized Hit- tr|I3S696|I3S696_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.79,0,rplM_bact: ribosomal protein L13,Ribosomal protein L13,
bacterial-type; 50S RIBOSOMAL PROTEIN L13,NU,CUFF.23405.1
         (248 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g054450.1 | 50S ribosomal protein L13 | HC | chr8:19793730...   346   1e-95
Medtr8g054450.2 | 50S ribosomal protein L13 | HC | chr8:19793730...   173   1e-43
Medtr3g082760.1 | 50S ribosomal protein L13 | HC | chr3:37350483...    93   2e-19

>Medtr8g054450.1 | 50S ribosomal protein L13 | HC |
           chr8:19793730-19798008 | 20130731
          Length = 240

 Score =  346 bits (888), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 162/195 (83%), Positives = 177/195 (90%), Gaps = 8/195 (4%)

Query: 54  VHCQQETSLVTEEQSPVVAVEQDPRFMCVEPEPRFKGPDIWNKTYYPKAADHVNTEKTWY 113
           VH QQETS+V EE+        DPRF+CVEPEPRF+GPDIWN T+YPKA+DHVNTEKTWY
Sbjct: 54  VHSQQETSIVAEEE--------DPRFICVEPEPRFQGPDIWNTTWYPKASDHVNTEKTWY 105

Query: 114 VVDATDKVLGRLASTIAIHIRGKNLMTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRR 173
           +VDATDK+LGRLASTIA HIRGKNL+TYTPSVDMG+FVIV+NAEKVAVSGKKRTQKLYRR
Sbjct: 106 IVDATDKILGRLASTIANHIRGKNLVTYTPSVDMGSFVIVINAEKVAVSGKKRTQKLYRR 165

Query: 174 HSGRPGGMKVETFSQLQNRIPERIIEHAVRGMLPKGRLGRDLFTHLKVYKGPDHPHAAQK 233
           HSGRPGGM VETF QLQNRIPERIIEHAVRGMLPKGRLGR LFT LKVY GPDHPH AQ+
Sbjct: 166 HSGRPGGMTVETFDQLQNRIPERIIEHAVRGMLPKGRLGRTLFTRLKVYSGPDHPHEAQQ 225

Query: 234 PVDLPIRDKRIELKR 248
           P+DLPIRDKRI+L+R
Sbjct: 226 PIDLPIRDKRIQLQR 240


>Medtr8g054450.2 | 50S ribosomal protein L13 | HC |
           chr8:19793730-19794805 | 20130731
          Length = 186

 Score =  173 bits (438), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 80/118 (67%), Positives = 92/118 (77%), Gaps = 8/118 (6%)

Query: 54  VHCQQETSLVTEEQSPVVAVEQDPRFMCVEPEPRFKGPDIWNKTYYPKAADHVNTEKTWY 113
           VH QQETS+V EE+        DPRF+CVEPEPRF+GPDIWN T+YPKA+DHVNTEKTWY
Sbjct: 54  VHSQQETSIVAEEE--------DPRFICVEPEPRFQGPDIWNTTWYPKASDHVNTEKTWY 105

Query: 114 VVDATDKVLGRLASTIAIHIRGKNLMTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLY 171
           +VDATDK+LGRLASTIA HIRGKNL+TYTPSVDMG+FVIVV      +     +   Y
Sbjct: 106 IVDATDKILGRLASTIANHIRGKNLVTYTPSVDMGSFVIVVRISAFIICNWHGSADFY 163


>Medtr3g082760.1 | 50S ribosomal protein L13 | HC |
           chr3:37350483-37354635 | 20130731
          Length = 200

 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 69/117 (58%)

Query: 112 WYVVDATDKVLGRLASTIAIHIRGKNLMTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLY 171
           W V DA  ++LGRLAS IA  + GK+  TYTP+ D G   IV+NA+ +AV+G+K T K+Y
Sbjct: 26  WRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKVY 85

Query: 172 RRHSGRPGGMKVETFSQLQNRIPERIIEHAVRGMLPKGRLGRDLFTHLKVYKGPDHP 228
             H+G  G +K  T      + P  +I  A+  M+PK  L  D    L+++ G +HP
Sbjct: 86  YWHTGYVGHLKQRTLKDQMAKDPTDVIRKAILRMIPKNNLRDDRDRKLRIFPGSEHP 142