Miyakogusa Predicted Gene
- Lj0g3v0341469.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0341469.1 Non Characterized Hit- tr|A5C0X5|A5C0X5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,56.32,3e-19,PREDICTED PROTEIN (FRAGMENT),NULL; GAG-POL-RELATED
RETROTRANSPOSON,NULL,CUFF.23385.1
(88 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g448730.1 | hypothetical protein | LC | chr3:16385365-1638... 67 3e-12
Medtr3g093120.1 | SPFH domain/band 7 family protein | LC | chr3:... 66 7e-12
Medtr7g056567.1 | hypothetical protein | LC | chr7:20137782-2013... 65 2e-11
Medtr7g056447.1 | F-box/RNI/FBD-like domain protein | LC | chr7:... 60 3e-10
Medtr2g014690.1 | Pol-like polyprotein/retrotransposon, putative... 59 1e-09
Medtr6g060522.1 | Pol polyprotein/retrotransposon, putative | LC... 59 1e-09
Medtr6g075400.1 | hypothetical protein | LC | chr6:28003835-2800... 57 3e-09
Medtr4g079363.1 | hypothetical protein | HC | chr4:30665843-3066... 56 7e-09
Medtr2g075320.1 | LCR related | HC | chr2:31485484-31482331 | 20... 56 8e-09
Medtr1g027010.1 | hypothetical protein | LC | chr1:8900521-89007... 55 1e-08
Medtr2g019760.1 | apoptosis-antagonizing transcription factor, c... 55 2e-08
Medtr2g046930.1 | transmembrane protein, putative | LC | chr2:20... 53 6e-08
Medtr8g011410.1 | cysteine-rich RLK (receptor-like kinase) prote... 52 8e-08
Medtr6g034995.1 | hypothetical protein | LC | chr6:12310735-1230... 52 1e-07
Medtr3g022740.1 | Ty1/Copia-like polyprotein/retrotransposon | L... 51 2e-07
>Medtr3g448730.1 | hypothetical protein | LC |
chr3:16385365-16387028 | 20130731
Length = 227
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 4 IHCDNIGTTYLCANPVFHSRMKHLAIDFHFVRELVQQGKLTVSHISTKDQPADALTKPLS 63
I CDN L NP+ HSR KH+ I HF+R+ VQ+G L + I T+ Q AD TKPLS
Sbjct: 150 IFCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDTEHQWADIFTKPLS 209
Query: 64 AAKF 67
+F
Sbjct: 210 VERF 213
>Medtr3g093120.1 | SPFH domain/band 7 family protein | LC |
chr3:42570339-42574091 | 20130731
Length = 534
Score = 66.2 bits (160), Expect = 7e-12, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 1 MP-RIHCDNIGTTYLCANPVFHSRMKHLAIDFHFVRELVQQGKLTVSHISTKDQPADALT 59
MP +++CD+ ++ NPVFH R KH+ +D HFVR + G+L S++ST Q AD LT
Sbjct: 451 MPMQLYCDSQSALHIAKNPVFHERTKHIELDCHFVRNEILHGQLQPSYVSTHAQLADILT 510
Query: 60 KPLSAAKF 67
K L A F
Sbjct: 511 KALGRAPF 518
>Medtr7g056567.1 | hypothetical protein | LC |
chr7:20137782-20139042 | 20130731
Length = 163
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%)
Query: 1 MPRIHCDNIGTTYLCANPVFHSRMKHLAIDFHFVRELVQQGKLTVSHISTKDQPADALTK 60
+P ++CDN ++ +N VFH R KHL ID+H VRE +Q G L + +S+ DQ D T
Sbjct: 57 LPVLYCDNRSALHIVSNSVFHERPKHLEIDYHIVREKLQSGILKLLPVSSHDQIVDFFTN 116
Query: 61 PLSAAKFCTFRDKMHVID 78
L F K+ +ID
Sbjct: 117 SLLPKSFSLLLSKLGLID 134
>Medtr7g056447.1 | F-box/RNI/FBD-like domain protein | LC |
chr7:20001294-20000413 | 20130731
Length = 293
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%)
Query: 3 RIHCDNIGTTYLCANPVFHSRMKHLAIDFHFVRELVQQGKLTVSHISTKDQPADALTKPL 62
RIHCD+ +L + V+H R KH+ I HFVR++++ ++ V +++++ PAD TK L
Sbjct: 217 RIHCDSQSAIHLANHQVYHERTKHIDIRLHFVRDMIESKEIVVEKVASEENPADVFTKSL 276
Query: 63 SAAKF 67
++F
Sbjct: 277 PRSRF 281
>Medtr2g014690.1 | Pol-like polyprotein/retrotransposon, putative |
LC | chr2:4240748-4238986 | 20130731
Length = 201
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 42/70 (60%)
Query: 16 ANPVFHSRMKHLAIDFHFVRELVQQGKLTVSHISTKDQPADALTKPLSAAKFCTFRDKMH 75
ANPVFH R KH+ ID H VR+ VQ G + + +S+K+Q AD T+PL F T + K+
Sbjct: 128 ANPVFHERTKHIEIDCHVVRDKVQAGLIHLLPVSSKEQVADIFTRPLHHGPFNTLQIKLG 187
Query: 76 VIDGDIILRG 85
I LRG
Sbjct: 188 TIIIHSSLRG 197
>Medtr6g060522.1 | Pol polyprotein/retrotransposon, putative | LC |
chr6:20849668-20848461 | 20130731
Length = 195
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 1 MPRIHCDNIGTTYLCANPVFHSRMKHLAIDFHFVRELVQQGKLTVSHISTKDQPADALTK 60
+P ++CDN ++ NP+FH KH+ I H VR+ +Q G + +S+KDQ AD T
Sbjct: 42 LPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLLVSSKDQLADIFTN 101
Query: 61 PLSAAKFCTFRDKMHVID 78
PL F T + +++
Sbjct: 102 PLLPQPFSTLLSNLGMLN 119
>Medtr6g075400.1 | hypothetical protein | LC |
chr6:28003835-28006556 | 20130731
Length = 203
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 4 IHCDNIGTTYLCANPVFHSRMKHLAIDFHFVRELVQQGKLTVSHISTKDQPADALTKPLS 63
+ CDN L N V R KH+ + FHFVR+L + G + V + ++Q AD +TKP+
Sbjct: 121 VFCDNASAIKLSKNYVLQGRSKHIDVRFHFVRDLCKDGVIDVIYCKNEEQTADIITKPVK 180
Query: 64 AAKFCTFRDKMHV 76
A F R + V
Sbjct: 181 TAMFEKLRSMLRV 193
>Medtr4g079363.1 | hypothetical protein | HC |
chr4:30665843-30666627 | 20130731
Length = 213
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 6 CDNIGTTYLCANPVFHSRMKHLAIDFHFVRELVQQGKLTVSHISTKDQPADALTKPLSAA 65
CDN T ++ +NPVFH R KH+ ID HFVR+ V ++ + + + DQ AD +TK L
Sbjct: 127 CDNQATLHIASNPVFHERTKHIEIDCHFVRDKVLSEEIIIDLVGSNDQLAD-ITKSLRGP 185
Query: 66 KFCTFRDKM 74
+ + +K+
Sbjct: 186 RVESICNKL 194
>Medtr2g075320.1 | LCR related | HC | chr2:31485484-31482331 |
20130731
Length = 309
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 16 ANPVFHSRMKHLAIDFHFVRELVQQGKLTVSHISTKDQPADALTKPLSAAKFCTFRDKMH 75
ANPVFH R KHL ID H VRE +Q G L + +S+KD+ AD TK + F K+
Sbjct: 225 ANPVFHERTKHLEIDCHIVREKLQAGILKLLPVSSKDRIADFFTKFVHPQLFNLLLSKLG 284
Query: 76 VID 78
++D
Sbjct: 285 IVD 287
>Medtr1g027010.1 | hypothetical protein | LC |
chr1:8900521-8900712 | 20130731
Length = 63
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%)
Query: 27 LAIDFHFVRELVQQGKLTVSHISTKDQPADALTKPLSAAKFCTFRDKMHVID 78
+ +D FVRE V + +L VSH+ +DQ AD LT PLS A+F RDK+ V D
Sbjct: 1 MKLDIFFVREKVIRKELNVSHVPAQDQWADVLTNPLSTARFLYLRDKLRVCD 52
>Medtr2g019760.1 | apoptosis-antagonizing transcription factor,
carboxy-terminal domain protein | LC |
chr2:6518637-6515904 | 20130731
Length = 205
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 33/50 (66%)
Query: 38 VQQGKLTVSHISTKDQPADALTKPLSAAKFCTFRDKMHVIDGDIILRGRK 87
VQQGKL + H+ST DQ AD LTKPLS + R+K+ V DG LRG K
Sbjct: 56 VQQGKLKIQHVSTTDQLADCLTKPLSKGRHHYLRNKIGVSDGTPTLRGFK 105
>Medtr2g046930.1 | transmembrane protein, putative | LC |
chr2:20614300-20613483 | 20130731
Length = 205
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 34/52 (65%)
Query: 37 LVQQGKLTVSHISTKDQPADALTKPLSAAKFCTFRDKMHVIDGDIILRGRKR 88
L +QGKL V H+ T DQ AD LTKPLS ++ +K+ V DG ILRGR R
Sbjct: 150 LNKQGKLKVQHVCTVDQLADCLTKPLSKSRHQLLWNKIGVTDGTPILRGRVR 201
>Medtr8g011410.1 | cysteine-rich RLK (receptor-like kinase) protein
| HC | chr8:3054719-3058128 | 20130731
Length = 1017
Score = 52.4 bits (124), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 17 NPVFHSRMKHLAIDFHFVRELVQQGKLTVSHISTKDQPADALTKPLSAAKFCTFRDKMHV 76
N VFH R KH+ IDF+F+ + G+L +S I DQPAD TKP S +F T K+ +
Sbjct: 922 NDVFHERTKHIEIDFYFICQHFLCGELLIS-IGILDQPADLFTKPHSPGRFRTLVFKLKL 980
>Medtr6g034995.1 | hypothetical protein | LC |
chr6:12310735-12309973 | 20130731
Length = 152
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 5 HCDNIGTTYLCANPVFHSRMKHLAIDFHFVRELVQQGKLTVSHISTKDQPADALTKPLSA 64
+ DN+ YL N + H KH+ ++ HFV + V +G++ V H+S++ Q +D TK L
Sbjct: 70 YYDNVSVVYLSENLIQHKCTKHIEMEIHFVCDKVAKGQVRVFHVSSRYQISDIFTKGLPL 129
Query: 65 AKFCTFRDKMHVIDGDIILRG 85
F FRD +++ + + G
Sbjct: 130 QLFDDFRDSLNIREPPVSSTG 150
>Medtr3g022740.1 | Ty1/Copia-like polyprotein/retrotransposon | LC |
chr3:6792938-6796622 | 20130731
Length = 727
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 6/66 (9%)
Query: 19 VFHSRMKHLAIDFHFVRELVQQGKLTVSHISTKDQPADALTKPLSAAKFCTFRDKMHVID 78
V+H R KH+ I HFVR++++ ++ V +++++ PA+ TK L ++F H +
Sbjct: 112 VYHERTKHIDIRLHFVRDMIESKEIVVEKVASEENPANVFTKSLPRSRF------KHYFE 165
Query: 79 GDIILR 84
G+++ R
Sbjct: 166 GEVLER 171