Miyakogusa Predicted Gene

Lj0g3v0341359.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0341359.2 tr|B9HCJ4|B9HCJ4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_762468 PE=4
SV=1,61.15,0,WD40,WD40 repeat; no description,WD40/YVTN
repeat-like-containing domain; WD40 repeat-like,WD40-repe,CUFF.23377.2
         (453 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g066770.1 | MAP kinase-binding-like protein | HC | chr7:24...   671   0.0  
Medtr8g092620.1 | MAP kinase organizer 1 | HC | chr8:38745356-38...    52   1e-06
Medtr8g092620.2 | MAP kinase organizer 1 | HC | chr8:38744844-38...    52   2e-06
Medtr3g106080.1 | TBP-associated factor 5 | HC | chr3:48932864-4...    50   4e-06

>Medtr7g066770.1 | MAP kinase-binding-like protein | HC |
           chr7:24350427-24347173 | 20130731
          Length = 475

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/455 (77%), Positives = 391/455 (85%), Gaps = 7/455 (1%)

Query: 1   MKPTR-RFNKPNTEESKLVLEEVIGLTTKNGNGLASNPSSSKCAYLAGSVVVIYDVSLGI 59
           MK TR RF KP T  SKLVLEEVIGLTTK+GNGLASN SSSKCAYLAGSVVVI DV+ G 
Sbjct: 1   MKTTRSRFKKPPTV-SKLVLEEVIGLTTKSGNGLASNVSSSKCAYLAGSVVVILDVNSGT 59

Query: 60  QSHLMVSNRPP-KPLSCVAMSREGRFIAAGEAGSQSSVLVWDSSTLSNVSELKGHPYRVA 118
           QSHL+ S+R   KPLSCVA+S++GRF+AAGE G+QSSVLVWDSSTLS VSELKGH   V 
Sbjct: 60  QSHLIASDRLSLKPLSCVALSKDGRFVAAGETGNQSSVLVWDSSTLSVVSELKGHLLGVT 119

Query: 119 CICFSPNGKHLVSVGGYIYLWDWRSGKLVTKLQATSSCSTISSVGFSSDAKFIVTVGKKH 178
           CICFSPNGKHLVS GGYIYLWDWRSG L+TK QATSS ST+SSVGFSSDAKFIVT GKKH
Sbjct: 120 CICFSPNGKHLVSGGGYIYLWDWRSGHLITKFQATSSGSTVSSVGFSSDAKFIVTAGKKH 179

Query: 179 LKFWTLGSSRSTRQNGGLSRT----TLEIHEKLTNLSIHKEGSFTAIAFSPESSISNDNC 234
           LKFWTL SSR T+QNGG+ RT    +L IHEKL NLSI K+ SFT+IA S  ++ S+DN 
Sbjct: 180 LKFWTLESSRKTQQNGGMRRTARSASLAIHEKLANLSIEKDCSFTSIASSVWTNSSDDNR 239

Query: 235 KRAGDCFHIYALTDSGILCLIRSGLTIQKSVALKVQKAFALSTSGKLIACACNNGEVQLF 294
           K+AG  F IYALTDSGIL LI SGL+++KSV LKVQ+AFALSTS KLIACACNNG V L+
Sbjct: 240 KQAGGLFPIYALTDSGILYLIHSGLSVKKSVILKVQRAFALSTSEKLIACACNNGTVLLY 299

Query: 295 TPISLEYVGSILYSKAQKLYEENNSVYHALVLEQDFQQSPALPDAVACKFSATEKLVVIY 354
           TP+SLEYVGSILYSKA+K YEENN+VYHA+  EQ+ QQ PALPDAVAC+F A EKLVVIY
Sbjct: 300 TPVSLEYVGSILYSKAKKFYEENNTVYHAVFPEQNSQQLPALPDAVACQFLAFEKLVVIY 359

Query: 355 RDHSLCIWDIHDVNQVTKCFMLVSHSSCIWDVKNLCCENMHDLSSVCTARGCSGGVSFAT 414
            DHSL IWDIHDVNQ TKCF+LVSHSSCIWD+KNLCCENMHD S  CTA+GCSGG+SFAT
Sbjct: 360 SDHSLYIWDIHDVNQATKCFVLVSHSSCIWDIKNLCCENMHDPSLACTAKGCSGGISFAT 419

Query: 415 CSADGTIRLWDIATQSELSKNAEELKSELLGSSCL 449
           CSADGTIRLWDI+ QS+LSK+A+ELK+ELLGSSCL
Sbjct: 420 CSADGTIRLWDISLQSDLSKDAKELKNELLGSSCL 454


>Medtr8g092620.1 | MAP kinase organizer 1 | HC |
           chr8:38745356-38740545 | 20130731
          Length = 330

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 17/142 (11%)

Query: 40  SKCAYLAGSV---VVIYDVSLGIQSHLMVSNRPPKPLSCVAMSREGRFIAAGEAGSQSSV 96
           +K   + GSV   V  +D+ +G +    +S+   +P++C++MS +G  I AG     S+V
Sbjct: 162 TKTEIIGGSVDGTVRTFDMRIGRE----ISDSLGQPVNCISMSNDGNCILAGCL--DSTV 215

Query: 97  LVWDSSTLSNVSELKGHP---YRVACICFSPNGKHLV--SVGGYIYLWDWRSGKLVTKLQ 151
            + D +T   + E KGH    Y++ C C +    H+   S  G++Y WD     +V+K +
Sbjct: 216 RLLDRTTGELLQEYKGHTNKSYKLDC-CLTNTDAHVTGGSEDGFVYFWDLVDASVVSKFR 274

Query: 152 ATSSCSTISSVGFSSDAKFIVT 173
           A +  S ++SV +      ++T
Sbjct: 275 AHT--SVVTSVSYHPKENCMIT 294


>Medtr8g092620.2 | MAP kinase organizer 1 | HC |
           chr8:38744844-38740226 | 20130731
          Length = 299

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 17/142 (11%)

Query: 40  SKCAYLAGSV---VVIYDVSLGIQSHLMVSNRPPKPLSCVAMSREGRFIAAGEAGSQSSV 96
           +K   + GSV   V  +D+ +G +    +S+   +P++C++MS +G  I AG     S+V
Sbjct: 155 TKTEIIGGSVDGTVRTFDMRIGRE----ISDSLGQPVNCISMSNDGNCILAGCL--DSTV 208

Query: 97  LVWDSSTLSNVSELKGHP---YRVACICFSPNGKHLV--SVGGYIYLWDWRSGKLVTKLQ 151
            + D +T   + E KGH    Y++ C C +    H+   S  G++Y WD     +V+K +
Sbjct: 209 RLLDRTTGELLQEYKGHTNKSYKLDC-CLTNTDAHVTGGSEDGFVYFWDLVDASVVSKFR 267

Query: 152 ATSSCSTISSVGFSSDAKFIVT 173
           A +  S ++SV +      ++T
Sbjct: 268 AHT--SVVTSVSYHPKENCMIT 287


>Medtr3g106080.1 | TBP-associated factor 5 | HC |
           chr3:48932864-48942802 | 20130731
          Length = 669

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 11/133 (8%)

Query: 73  LSCVAMSREGRFIAAGEAGSQSSVLVWDSSTLSNVSELKGHPYRVACICFSPNGKHLVS- 131
           + CV       +IA G   S  +V +WD  +   V    GH   +  +  SP+G+++ S 
Sbjct: 506 VDCVQWHANCNYIATG--SSDKTVRLWDVQSGECVRVFVGHRGMILSLSMSPDGRYMASG 563

Query: 132 -VGGYIYLWDWRSGKLVTKLQATSSCSTISSVGFSSDAKFIVTVGKK-HLKFWTLGS--- 186
              G I +WD  SG+ VT L   +SC  + S+ FSS+   + +      +K W + +   
Sbjct: 564 DEDGTIMMWDLSSGRCVTPLVGHTSC--VWSLAFSSEGSILASGSADCTVKLWDVNTSTK 621

Query: 187 -SRSTRQNGGLSR 198
            SR+  +NG  +R
Sbjct: 622 VSRTEEKNGNANR 634