Miyakogusa Predicted Gene

Lj0g3v0341299.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0341299.1 Non Characterized Hit- tr|G5DX57|G5DX57_SILLA
Putative uncharacterized protein (Fragment) OS=Silene
,37.67,3e-18,seg,NULL,CUFF.23367.1
         (208 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g073305.1 | hypothetical protein | HC | chr8:31085398-3108...   209   2e-54

>Medtr8g073305.1 | hypothetical protein | HC |
           chr8:31085398-31082945 | 20130731
          Length = 380

 Score =  209 bits (531), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/212 (60%), Positives = 137/212 (64%), Gaps = 5/212 (2%)

Query: 2   KDEELARKLHRAMNSSPRISKNSPRSGSKGCRSKKPRXXXXXXXXXXXX-XMEVGQDCLS 60
           KDEELARKLHRAMNSSPRISK  P+S SKG RSK+PR              M VGQDCLS
Sbjct: 168 KDEELARKLHRAMNSSPRISKTPPKSDSKGSRSKRPRSSSSFEMTEGSECGMAVGQDCLS 227

Query: 61  LNNRHVIAGKIYSEGSNQEVCXXXXXXXXXXXXXXXXXEIDNREAELSQSKQKNCEDSSX 120
           LNN H I+GKI SEGSNQEVC                 EIDN EAE S SK KNCEDS  
Sbjct: 228 LNNGHAISGKIDSEGSNQEVCSSKKDKKAIKYDRSSQIEIDNGEAESSHSKPKNCEDSHS 287

Query: 121 --XXXXXXXXXXXXXXLSICSSKD-AQPREGIKAR-ISSLTEMNTGNHHVDSIPVFPVEP 176
                           LSIC+SKD A+PRE IK R  SSLTEMNT N HV +IPVFPVEP
Sbjct: 288 PPIGKKRGRTKLKKLPLSICTSKDKAKPREEIKVRRSSSLTEMNTTNQHVHTIPVFPVEP 347

Query: 177 STNRVMPTEATSIRKCQEFKAPACIKQNKVVQ 208
           ST+R+ P EATS  KCQ+FK PACIKQNK VQ
Sbjct: 348 STDRMKPIEATSTWKCQDFKVPACIKQNKAVQ 379