Miyakogusa Predicted Gene
- Lj0g3v0340609.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0340609.1 tr|G7KPD3|G7KPD3_MEDTR Peroxisomal fatty acid
beta-oxidation multifunctional protein OS=Medicago tru,88.29,0,no
description,NULL; no description,NAD(P)-binding domain;
3-HYDROXYACYL-COA DEHYROGENASE,NULL; ECH,,CUFF.23325.1
(411 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g087670.1 | glyoxysomal fatty acid beta-oxidation MFP-A pr... 696 0.0
Medtr2g436300.1 | glyoxysomal fatty acid beta-oxidation MFP-A pr... 458 e-129
Medtr4g120130.1 | glyoxysomal fatty acid beta-oxidation MFP-A pr... 447 e-125
Medtr0837s0020.1 | 3-hydroxyacyl-CoA dehydrogenase NAD-binding p... 141 9e-34
Medtr4g122220.1 | enoyl-CoA hydratase/isomerase family protein |... 79 1e-14
Medtr2g039260.1 | NAD-binding domain 3-hydroxyacyl-CoA dehydroge... 62 9e-10
Medtr4g100350.1 | enoyl-CoA hydratase/isomerase family protein |... 62 1e-09
Medtr8g061230.1 | 3-hydroxyacyl-CoA dehyrogenase | HC | chr8:210... 59 7e-09
Medtr8g058775.1 | 3-hydroxyacyl-CoA dehyrogenase | HC | chr8:202... 59 7e-09
Medtr3g085700.1 | enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-... 57 3e-08
>Medtr6g087670.1 | glyoxysomal fatty acid beta-oxidation MFP-A
protein | HC | chr6:32981575-32974721 | 20130731
Length = 722
Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/411 (84%), Positives = 371/411 (90%), Gaps = 2/411 (0%)
Query: 1 MASVKVDFEVGNDGVAVITMCNPPVNALAVPIIKALKDRFDEAARRNDVKAIVLTGKGGR 60
MASVKVDFEVGNDGVAVITMCNPPVNALA+PII+ LK++F+EAARRNDVKAIVLTGKGGR
Sbjct: 1 MASVKVDFEVGNDGVAVITMCNPPVNALAIPIIRGLKNKFEEAARRNDVKAIVLTGKGGR 60
Query: 61 FSGGFDISVMQKVHQTGDVTLVPDVSVELVVNAIEDSKKPXXXXXXXXXXXXXXXXXMGC 120
FSGGFDISVMQKVHQTGD+TLVPDVSVELVVN+IEDSKKP MGC
Sbjct: 61 FSGGFDISVMQKVHQTGDITLVPDVSVELVVNSIEDSKKPVVAAVEGLALGGGLELAMGC 120
Query: 121 HARVAAPRTQLGLPELTLGIIPGFGGTQRLPRLVGLSKAVEMMLKSKSITSEEGNKLGLI 180
HARVAAP+ QLGLPELTLGIIPGFGGTQRLPRLVG SKAVEMML SK IT+EEG KLGLI
Sbjct: 121 HARVAAPKAQLGLPELTLGIIPGFGGTQRLPRLVGTSKAVEMMLTSKPITAEEGQKLGLI 180
Query: 181 DAIVSPGDLLNVSRRWALEIGERRKPWIRSLHKTDKLGSLSEAREVLKTAREHVKKTAAH 240
DAIVSP +LL +SR+WALEI E+R+PWIRSLH TDKLGS +AREVL+TAR+HVKKTA H
Sbjct: 181 DAIVSPAELLKLSRQWALEIAEQRRPWIRSLHITDKLGS--DAREVLRTARQHVKKTAPH 238
Query: 241 LPQQQACVDVIEHGIVHGGYSGVLREAEVFKQLVLSETAKGLIHVFFAQRAISKVPGVTD 300
LPQQQAC+DVIEHGI+HGGYSGVLREAEVFK+LVLSETAKGLIHVFFAQR ISK+PGVTD
Sbjct: 239 LPQQQACIDVIEHGILHGGYSGVLREAEVFKKLVLSETAKGLIHVFFAQRTISKIPGVTD 298
Query: 301 IGLKPRNVRKAAVIGGGLMGSGIATALILGNIHVILKEVNSEYLQKGIKFIEANVSGLVR 360
IGLKPRNVRKAAVIGGGLMGSGIATALILGNI VILKEVNSEYLQKGIK IEANV GLV
Sbjct: 299 IGLKPRNVRKAAVIGGGLMGSGIATALILGNIRVILKEVNSEYLQKGIKTIEANVRGLVT 358
Query: 361 RGKLTKQKADGALSLLKGVLDYTEFKDVDLVIEAVIENVGLKQTIFSDLEK 411
R KLT+QKA+GALSLLKGVLDY EFKDVD+VIEAVIE V LKQ IFSDLEK
Sbjct: 359 RKKLTQQKAEGALSLLKGVLDYAEFKDVDMVIEAVIEKVSLKQDIFSDLEK 409
>Medtr2g436300.1 | glyoxysomal fatty acid beta-oxidation MFP-A
protein | HC | chr2:14109767-14119095 | 20130731
Length = 721
Score = 458 bits (1179), Expect = e-129, Method: Compositional matrix adjust.
Identities = 230/411 (55%), Positives = 298/411 (72%)
Query: 1 MASVKVDFEVGNDGVAVITMCNPPVNALAVPIIKALKDRFDEAARRNDVKAIVLTGKGGR 60
MA EVG DGVA+IT+ NPPVN+L+ + ++LK+ FDEA +R DVKAIV+TG G+
Sbjct: 1 MAKGHTVLEVGADGVAIITIVNPPVNSLSFDVFQSLKESFDEAHKREDVKAIVVTGAKGK 60
Query: 61 FSGGFDISVMQKVHQTGDVTLVPDVSVELVVNAIEDSKKPXXXXXXXXXXXXXXXXXMGC 120
FSGGFDI+ + + T +S+EL N IE +KP M C
Sbjct: 61 FSGGFDINAFGLIQKGLGDTKPGLISIELQTNTIEAGRKPTVAAIDGLALGGGLELAMAC 120
Query: 121 HARVAAPRTQLGLPELTLGIIPGFGGTQRLPRLVGLSKAVEMMLKSKSITSEEGNKLGLI 180
AR++ P QLGLPEL LG+IPG GGTQRLPRLVGL+KA+EMML SK+I +EE + LGL+
Sbjct: 121 TARISTPSAQLGLPELQLGVIPGGGGTQRLPRLVGLAKALEMMLTSKAIKAEEAHSLGLV 180
Query: 181 DAIVSPGDLLNVSRRWALEIGERRKPWIRSLHKTDKLGSLSEAREVLKTAREHVKKTAAH 240
DA+VS L++ +R+WAL+I +RR+PW+ SL+KTDK+ SL EARE+LK A+ +K A +
Sbjct: 181 DALVSRDKLVSAARQWALDIVDRRRPWVASLYKTDKIESLGEAREILKFAKTQAQKRAPN 240
Query: 241 LPQQQACVDVIEHGIVHGGYSGVLREAEVFKQLVLSETAKGLIHVFFAQRAISKVPGVTD 300
L C+DVIEHGIV G +G+L+EAE F+ LV S+T K LIH+FF+QR SKVPGVTD
Sbjct: 241 LKHPLVCIDVIEHGIVAGPRAGLLKEAEAFEGLVASDTCKSLIHIFFSQRGTSKVPGVTD 300
Query: 301 IGLKPRNVRKAAVIGGGLMGSGIATALILGNIHVILKEVNSEYLQKGIKFIEANVSGLVR 360
GL PR V+K A++GGGLMGSGIATALIL N VILKEVN ++L+ G+ ++AN+ V+
Sbjct: 301 RGLVPRQVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGVNRVKANLQSRVK 360
Query: 361 RGKLTKQKADGALSLLKGVLDYTEFKDVDLVIEAVIENVGLKQTIFSDLEK 411
+G++TK+K + +SLLKG +DY FKDVDLVIEAVIENV LKQ IF+DLEK
Sbjct: 361 KGQMTKEKFEKTISLLKGTIDYESFKDVDLVIEAVIENVVLKQQIFADLEK 411
>Medtr4g120130.1 | glyoxysomal fatty acid beta-oxidation MFP-A
protein | HC | chr4:49803884-49795592 | 20130731
Length = 723
Score = 447 bits (1149), Expect = e-125, Method: Compositional matrix adjust.
Identities = 222/402 (55%), Positives = 290/402 (72%)
Query: 10 VGNDGVAVITMCNPPVNALAVPIIKALKDRFDEAARRNDVKAIVLTGKGGRFSGGFDISV 69
VG DGVA+IT+ NPPVN+L+ ++++LK+ FD+A +R+DVKAIV+TG G+FSGGFDIS
Sbjct: 12 VGADGVAIITIINPPVNSLSFDVLQSLKESFDQAIQRDDVKAIVVTGAKGKFSGGFDISA 71
Query: 70 MQKVHQTGDVTLVPDVSVELVVNAIEDSKKPXXXXXXXXXXXXXXXXXMGCHARVAAPRT 129
+ + + +S+E++ + IE +KKP M C+AR++
Sbjct: 72 FGGLQEAKERPKPGWISIEIITDTIEAAKKPSVAAIDGLALGGGLEVAMACNARLSTATA 131
Query: 130 QLGLPELTLGIIPGFGGTQRLPRLVGLSKAVEMMLKSKSITSEEGNKLGLIDAIVSPGDL 189
QLGLPEL LGIIPGFGGTQRLPRLVGL+KA+EMML SK + ++ GL+D +VSP L
Sbjct: 132 QLGLPELQLGIIPGFGGTQRLPRLVGLTKALEMMLTSKPVKGKDAFSSGLVDGLVSPDQL 191
Query: 190 LNVSRRWALEIGERRKPWIRSLHKTDKLGSLSEAREVLKTAREHVKKTAAHLPQQQACVD 249
+N +R+WAL+I +RR+PWI SL+KT+K+ L EARE+LK AR +K A +L C+D
Sbjct: 192 VNTARQWALDILDRRRPWIASLYKTEKIEPLGEAREILKFARAQARKQAPNLKHPLVCID 251
Query: 250 VIEHGIVHGGYSGVLREAEVFKQLVLSETAKGLIHVFFAQRAISKVPGVTDIGLKPRNVR 309
VIE GIV G +G+ +EAE F LV S+T K LIH+FFAQR SKVPGVTD GL PR V+
Sbjct: 252 VIEAGIVSGPRAGLWKEAEAFDALVQSDTCKSLIHIFFAQRGTSKVPGVTDRGLVPRPVK 311
Query: 310 KAAVIGGGLMGSGIATALILGNIHVILKEVNSEYLQKGIKFIEANVSGLVRRGKLTKQKA 369
K A++GGGLMGSGIATALIL N VILKEVN ++L GI I+AN+ V++G LT+++
Sbjct: 312 KVAILGGGLMGSGIATALILSNYSVILKEVNEKFLDAGINRIKANLQSRVKKGNLTQERF 371
Query: 370 DGALSLLKGVLDYTEFKDVDLVIEAVIENVGLKQTIFSDLEK 411
+ A SL+KG LDY F+DVD+VIEAVIENV LKQ IF+DLEK
Sbjct: 372 EKAFSLVKGSLDYDSFRDVDMVIEAVIENVSLKQQIFADLEK 413
>Medtr0837s0020.1 | 3-hydroxyacyl-CoA dehydrogenase NAD-binding
protein, putative | LC | scaffold0837:2078-5260 |
20130731
Length = 962
Score = 141 bits (356), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 184/393 (46%), Gaps = 23/393 (5%)
Query: 14 GVAVITMCNPPVNALAVPIIKALKDRFDEAARRNDVKAIVLTGKGGRFSGGFDISVMQKV 73
GVAV T+ +PPVNAL+ P+ +AL A V+A+VL G F G D+ K
Sbjct: 159 GVAVFTLAHPPVNALSTPLRQALLAALRAAEADESVEAVVLAGNSRAFCAGADL----KE 214
Query: 74 HQTGDVTLVPDVSVELVVNAIEDSKKPXXXXXXXXXXXXXXXXXMGCHARVAAPRTQLGL 133
G P ++ E++V I KP + CHARVA LGL
Sbjct: 215 FNEGTAFGYPSLT-EVLVPFILAMSKPVVAAIEGCALGGGLELALWCHARVATHDAPLGL 273
Query: 134 PELTLGIIPGFGGTQRLPRLVGLSKAVEMMLKSKSITSEEGNKLGLIDAIVSPGDLLNVS 193
E TLG++PG GG Q LPR +GL +A+ +++ + ++ + L+DA+ + L+ V+
Sbjct: 274 TETTLGLMPGAGGNQLLPRAIGLERALNLIVSGRVEPAKNFDGTALVDALSTRETLIEVA 333
Query: 194 RRWALEIGERRKPWIRSLHKTDKLGSLSEAREVLKTAREHVKKTAAHLPQQQACVDVIEH 253
L I +P+ H + ++ + E L A + +D +
Sbjct: 334 AGLGLRIARIGRPFP---HLSARVVTHPEPAGFLAFAMAQARSRKDANRGMLVAIDALAL 390
Query: 254 GIVHGGYSGVLREAEVFKQLVLSETAKGLIHVFFAQRAISKVPGVTDIGLKPRNVRKAAV 313
+ G+ +E +F ++ E A + H FFAQR +KV + K + +++AAV
Sbjct: 391 SLKLPVLDGLKKEFALFTDVMQGEQAAAIRHAFFAQRESTKVLDLNPEA-KAQPIKRAAV 449
Query: 314 IGGGLMGSGIATALILGNIHVILKEVNSEYLQKGIKFIEANVSGLVRRGKLTKQKADGAL 373
IG G MGSGIA L I V L + N++ Q ++ + +N AD
Sbjct: 450 IGAGFMGSGIAHCLNRAGIEVFLHDANTDLAQSAVETLRSN--------------ADVDS 495
Query: 374 SLLKGVLDYTEFKDVDLVIEAVIENVGLKQTIF 406
+ L + ++ +VDLV+EAV+E++ +K +F
Sbjct: 496 TRLDVLPALSDLAEVDLVVEAVVESMEVKIEVF 528
>Medtr4g122220.1 | enoyl-CoA hydratase/isomerase family protein | HC
| chr4:50465773-50468340 | 20130731
Length = 261
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 6/196 (3%)
Query: 14 GVAVITMCNP-PVNALAVPIIKALKDRFDEAARRNDVKAIVLTGKGGRFSGGFDISVMQK 72
G+AV+T+ P +N+L + L F R V+ I+LTG G F G D++ +
Sbjct: 15 GIAVVTINRPDSLNSLTRAMNVDLAQAFKSLDRDESVRVIILTGTGRSFCSGVDLTAAED 74
Query: 73 VHQTGDVTLVPDVSVELVVNAIEDSKKPXXXXXXXXXXXXXXXXXMGCHARVAAPRTQLG 132
V + GDV D + VV +E KP + C VAA +
Sbjct: 75 VFK-GDV---KDPESDPVVQ-MERCHKPIIGAIKGFAVTAGFEIALACDILVAAKGAKFM 129
Query: 133 LPELTLGIIPGFGGTQRLPRLVGLSKAVEMMLKSKSITSEEGNKLGLIDAIVSPGDLLNV 192
GI P +G +Q+L R++G++KA E+ L + +T+E KLGL++ +V G+L+
Sbjct: 130 DTHARFGIFPSWGLSQKLSRIIGVNKAREVSLTATPLTAEVAEKLGLVNHLVEDGELMKK 189
Query: 193 SRRWALEIGERRKPWI 208
SR A I + + +
Sbjct: 190 SREIAEAIAKNSQDMV 205
>Medtr2g039260.1 | NAD-binding domain 3-hydroxyacyl-CoA
dehydrogenase | LC | chr2:17206458-17207351 | 20130731
Length = 107
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 36/69 (52%), Positives = 42/69 (60%)
Query: 277 ETAKGLIHVFFAQRAISKVPGVTDIGLKPRNVRKAAVIGGGLMGSGIATALILGNIHVIL 336
E KG FF V GVTD GL R V+ A++GGGLM GIAT LIL N VIL
Sbjct: 22 EKIKGQYKHFFNNSWHEWVLGVTDRGLISRPVKNVAILGGGLMNLGIATTLILSNYLVIL 81
Query: 337 KEVNSEYLQ 345
KEVN ++L+
Sbjct: 82 KEVNEKFLE 90
>Medtr4g100350.1 | enoyl-CoA hydratase/isomerase family protein | HC
| chr4:41356294-41359932 | 20130731
Length = 300
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%)
Query: 118 MGCHARVAAPRTQLGLPELTLGIIPGFGGTQRLPRLVGLSKAVEMMLKSKSITSEEGNKL 177
+ C R+ +GLPE L IIPG GGTQRLPRLVG + A +++ + I E +
Sbjct: 157 LACDIRICGANALMGLPETGLAIIPGAGGTQRLPRLVGKAVAKDIIFTGRKINGIEALSM 216
Query: 178 GLIDAIVSPGD 188
GL++ V+ G+
Sbjct: 217 GLVNYCVAAGE 227
>Medtr8g061230.1 | 3-hydroxyacyl-CoA dehyrogenase | HC |
chr8:21056770-21061794 | 20130731
Length = 296
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 60/105 (57%)
Query: 307 NVRKAAVIGGGLMGSGIATALILGNIHVILKEVNSEYLQKGIKFIEANVSGLVRRGKLTK 366
+V+ VIGGG MGSGIA + I V L +VN + L I ++++ LV + +L++
Sbjct: 3 DVKMIGVIGGGQMGSGIAQLTAMHGIDVCLLDVNPQVLSTASSSISSSINRLVSKSQLSQ 62
Query: 367 QKADGALSLLKGVLDYTEFKDVDLVIEAVIENVGLKQTIFSDLEK 411
A AL L+ + + D +IEA++E+ +K+++F L+K
Sbjct: 63 STASDALKRLRFTTNLNDLSVADFIIEAIVESEEVKKSLFVQLDK 107
>Medtr8g058775.1 | 3-hydroxyacyl-CoA dehyrogenase | HC |
chr8:20270126-20275266 | 20130731
Length = 296
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 60/105 (57%)
Query: 307 NVRKAAVIGGGLMGSGIATALILGNIHVILKEVNSEYLQKGIKFIEANVSGLVRRGKLTK 366
+V+ VIGGG MGSGIA + I V L +VN + L I ++++ LV + +L++
Sbjct: 3 DVKMIGVIGGGQMGSGIAQLTAMHGIDVCLLDVNPQVLSTASSSISSSINRLVSKSQLSQ 62
Query: 367 QKADGALSLLKGVLDYTEFKDVDLVIEAVIENVGLKQTIFSDLEK 411
A AL L+ + + D +IEA++E+ +K+++F L+K
Sbjct: 63 STASDALKRLRFTTNLNDLSVADFIIEAIVESEEVKKSLFVQLDK 107
>Medtr3g085700.1 | enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA
isomerase | HC | chr3:38775971-38777283 | 20130731
Length = 272
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 11/167 (6%)
Query: 48 DVKAIVLTGKGGRFSGGFDISVMQKVHQTGDVTLVPD--------VSVELVVNAIEDSKK 99
+V IVL+G G F G D+S+++ T D VP ++++ + A+E +K
Sbjct: 53 NVNVIVLSGAGKHFCSGIDLSLLK---STADSNSVPGGESLRRQILAMQESITALERCRK 109
Query: 100 PXXXXXXXXXXXXXXXXXMGCHARVAAPRTQLGLPELTLGIIPGFGGTQRLPRLVGLSKA 159
P C RV + E+ L + G QRLP +VG A
Sbjct: 110 PVIASIHGACIGGGIDIITACDIRVCTEDAFFSVKEVDLALAADLGTLQRLPTIVGFGNA 169
Query: 160 VEMMLKSKSITSEEGNKLGLIDAIVSPGDLLNVSRRWALEIGERRKP 206
+E+ L ++ + E +LGL+ + + L+ R E + P
Sbjct: 170 MELALTARRFSGLEAKELGLVSRVFHSKNDLDQGVRVIAEAIATKSP 216