Miyakogusa Predicted Gene

Lj0g3v0340219.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0340219.1 Non Characterized Hit- tr|K0RQF1|K0RQF1_THAOC
Uncharacterized protein OS=Thalassiosira oceanica
PE=4,27.23,2e-16,Rhomboid-like,NULL; Rhomboid,Peptidase S54, rhomboid
domain; seg,NULL; no description,NULL; SUBFAMIL,CUFF.23275.1
         (271 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g067340.1 | S54 (rhomboid) subfamily peptidase | HC | chr4...   481   e-136
Medtr7g107390.2 | rhomboid family protein | HC | chr7:43813742-4...    55   1e-07
Medtr7g107390.1 | rhomboid family protein | HC | chr7:43813742-4...    54   1e-07
Medtr4g123573.1 | rhomboid-like protein | HC | chr4:51389558-513...    49   4e-06

>Medtr4g067340.1 | S54 (rhomboid) subfamily peptidase | HC |
           chr4:25424578-25426275 | 20130731
          Length = 271

 Score =  481 bits (1237), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 232/271 (85%), Positives = 251/271 (92%)

Query: 1   MGKPLFYEILEKPATSVLIGICSVIWFYIQKKNIGYSHVGLSYETAIEGQHWRVITSAFS 60
           MGKPL YEILEKPATSV+I ICS IWFYIQKKNIGYSHVGLSYETA+EGQ+WR+ITSAFS
Sbjct: 1   MGKPLIYEILEKPATSVIIAICSAIWFYIQKKNIGYSHVGLSYETAMEGQYWRIITSAFS 60

Query: 61  HISVIHLVFNLSALWCLGVVEQLDHLGLGVEYYLQYTXXXXXXXXXXXXAMYHLLIQRFK 120
           HIS+IHLVFN+SALW LG VEQLDH+GLGVEYYLQYT            AMYHLLIQRFK
Sbjct: 61  HISIIHLVFNMSALWSLGAVEQLDHVGLGVEYYLQYTLVLVVVSGVLVLAMYHLLIQRFK 120

Query: 121 IEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
           +EYFRRVTAVGYSCVVFGWMTILSVKQPSSKL+LFGFLSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 VEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLELFGFLSLPISFAPFESLIFTSIIVPQA 180

Query: 181 SFLGHLSGIVVGYAIAWGLIHGMSNYWALSLLGWIVLVFVLSLKRSGVLELNFLEIESVT 240
           SF+GHLSGIVVGYAIAWGLIHGM+NYWAL+LLGWIVLVFVLSLK+S  L+++F+EIESVT
Sbjct: 181 SFIGHLSGIVVGYAIAWGLIHGMTNYWALTLLGWIVLVFVLSLKKSSALDISFIEIESVT 240

Query: 241 DPSLPSVRFLASGNGRTLQMSALPDGNIDLV 271
           DPSLPSVRFL SGNGRTLQMSALPDGN+D+V
Sbjct: 241 DPSLPSVRFLGSGNGRTLQMSALPDGNVDIV 271


>Medtr7g107390.2 | rhomboid family protein | HC |
           chr7:43813742-43818623 | 20130731
          Length = 358

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 92/212 (43%), Gaps = 17/212 (8%)

Query: 15  TSVLIGICSVIWFYIQKKNIGYSHVG----LSYETAIEGQHWRVITSAFSHISVIHLVFN 70
           TS ++ +C  I+F      +GY        L        Q +R+ T+   H S++H++FN
Sbjct: 32  TSAVVIVCGAIYFVCLL--VGYDSFSEICFLPSAVVSRFQVYRIYTAILFHGSLLHVLFN 89

Query: 71  LSALWCLGVVEQLDHLGLGVEYYLQYTXXXXXXXXXXXXAMYHLLIQRFKI---EYFRRV 127
           + AL  LG   +L+ +   V   L Y                 LL+    I    Y    
Sbjct: 90  MMALVPLG--SELERIMGSVR--LLYVTILLATSNAIIHVFIALLVAYNPILTNGYLMNE 145

Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLS 187
            A+G+S V+F  + I +         +FG  ++P  +  F  L+   +++   S LGHLS
Sbjct: 146 CAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFFLLVVFQLLMQNVSLLGHLS 205

Query: 188 GIVVGYAIAWG----LIHGMSNYWALSLLGWI 215
           GIV G+A  +G    LI G S Y ++    W+
Sbjct: 206 GIVSGFAYTFGLFNFLIPGTSFYSSIEASSWL 237


>Medtr7g107390.1 | rhomboid family protein | HC |
           chr7:43813742-43820538 | 20130731
          Length = 409

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 92/212 (43%), Gaps = 17/212 (8%)

Query: 15  TSVLIGICSVIWFYIQKKNIGYSHVG----LSYETAIEGQHWRVITSAFSHISVIHLVFN 70
           TS ++ +C  I+F      +GY        L        Q +R+ T+   H S++H++FN
Sbjct: 32  TSAVVIVCGAIYFVCLL--VGYDSFSEICFLPSAVVSRFQVYRIYTAILFHGSLLHVLFN 89

Query: 71  LSALWCLGVVEQLDHLGLGVEYYLQYTXXXXXXXXXXXXAMYHLLIQRFKI---EYFRRV 127
           + AL  LG   +L+ +   V   L Y                 LL+    I    Y    
Sbjct: 90  MMALVPLG--SELERIMGSVR--LLYVTILLATSNAIIHVFIALLVAYNPILTNGYLMNE 145

Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLS 187
            A+G+S V+F  + I +         +FG  ++P  +  F  L+   +++   S LGHLS
Sbjct: 146 CAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFFLLVVFQLLMQNVSLLGHLS 205

Query: 188 GIVVGYAIAWG----LIHGMSNYWALSLLGWI 215
           GIV G+A  +G    LI G S Y ++    W+
Sbjct: 206 GIVSGFAYTFGLFNFLIPGTSFYSSIEASSWL 237


>Medtr4g123573.1 | rhomboid-like protein | HC |
           chr4:51389558-51390903 | 20130731
          Length = 335

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 9/142 (6%)

Query: 53  RVITSAFSHISVIHLVFNLSALWCLGVVEQLDHL--GLGVEYYLQYTXXXXXXXXXXXXA 110
           R   SAF H+   HLVFN+ +L   G+     HL   +G   +                 
Sbjct: 77  RFFLSAFYHLGEPHLVFNMISLLWKGI-----HLESSIGSLQFASMIASLLALSQSINLV 131

Query: 111 MYHLLIQRFKIEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESL 170
           +   L   F  + +    A G+S V+F  M I+   Q     +++G L +P  +A +  L
Sbjct: 132 LSKSLFVFFDYDRYYYEYAAGFSGVLFA-MKIVLNSQSDDYTNVYGVL-IPSRYAAWAEL 189

Query: 171 IFTSIIVPQASFLGHLSGIVVG 192
           I   + VP  SFLGHLSGI+ G
Sbjct: 190 ILIQMFVPNVSFLGHLSGILAG 211