Miyakogusa Predicted Gene
- Lj0g3v0339429.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0339429.2 Non Characterized Hit- tr|I3T4A5|I3T4A5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.52,0,seg,NULL;
PTPLA,Protein-tyrosine phosphatase-like, PTPLA; SUBFAMILY NOT
NAMED,NULL; PTPLA DOMAIN PRO,CUFF.23280.2
(209 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g471160.1 | 3-hydroxyacyl-CoA dehydratase | HC | chr8:2876... 323 6e-89
Medtr8g471160.2 | 3-hydroxyacyl-CoA dehydratase | HC | chr8:2876... 195 2e-50
Medtr4g060990.1 | tyrosine phosphatase-like protein PTPLB protei... 72 5e-13
>Medtr8g471160.1 | 3-hydroxyacyl-CoA dehydratase | HC |
chr8:28767335-28770414 | 20130731
Length = 221
Score = 323 bits (829), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 157/193 (81%), Positives = 170/193 (88%)
Query: 17 NWTVFFGWVQVLYLVLKTLKESGHEHVYSAAEKPLILAQTAAVLEILHGLVGLVRSPITA 76
N+TV FGW+QVL+LVLKTLKE GH++VYS A+KPL+ AQTAA+LEILHGLVG+VRSPI+A
Sbjct: 17 NFTVLFGWLQVLFLVLKTLKEMGHQNVYSVAQKPLLFAQTAAILEILHGLVGIVRSPISA 76
Query: 77 TLPQISSRLFLVWGILWSFPETRTHXXXXXXXXXXXXTEIIRYLFFGFKEAFGFAPSWLL 136
TLPQISSRLFLVWGILWSFPET+TH TEIIRY FFG KEAF F+PSWLL
Sbjct: 77 TLPQISSRLFLVWGILWSFPETQTHFLVSSLLISWSITEIIRYSFFGLKEAFSFSPSWLL 136
Query: 137 WLRYSTFLVLYPTGISSEVGLIYIVLPFIKASEKYCIRMPNTWNSSFDYFYAAIVSLGIY 196
WLRYSTFLVLYPTGISSEVGLIYI LPFIKASEKYCIRMPNTWNSSFDYFY AIV+L IY
Sbjct: 137 WLRYSTFLVLYPTGISSEVGLIYIALPFIKASEKYCIRMPNTWNSSFDYFYIAIVALAIY 196
Query: 197 VPGSPHMYRYMLA 209
VPGSPHMY YMLA
Sbjct: 197 VPGSPHMYSYMLA 209
>Medtr8g471160.2 | 3-hydroxyacyl-CoA dehydratase | HC |
chr8:28767335-28770380 | 20130731
Length = 156
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/130 (73%), Positives = 108/130 (83%)
Query: 17 NWTVFFGWVQVLYLVLKTLKESGHEHVYSAAEKPLILAQTAAVLEILHGLVGLVRSPITA 76
N+TV FGW+QVL+LVLKTLKE GH++VYS A+KPL+ AQTAA+LEILHGLVG+VRSPI+A
Sbjct: 17 NFTVLFGWLQVLFLVLKTLKEMGHQNVYSVAQKPLLFAQTAAILEILHGLVGIVRSPISA 76
Query: 77 TLPQISSRLFLVWGILWSFPETRTHXXXXXXXXXXXXTEIIRYLFFGFKEAFGFAPSWLL 136
TLPQISSRLFLVWGILWSFPET+TH TEIIRY FFG KEAF F+PSWLL
Sbjct: 77 TLPQISSRLFLVWGILWSFPETQTHFLVSSLLISWSITEIIRYSFFGLKEAFSFSPSWLL 136
Query: 137 WLRYSTFLVL 146
WLRY +VL
Sbjct: 137 WLRYEICVVL 146
>Medtr4g060990.1 | tyrosine phosphatase-like protein PTPLB protein |
HC | chr4:22442171-22439368 | 20130731
Length = 219
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 79/172 (45%), Gaps = 5/172 (2%)
Query: 21 FFGWVQVLYLVLKTLKESGHEHVYSAAEKPLILAQTAAVLEILHGLVGLVRSPITATLPQ 80
F + +LY +L T +G Y++A + Q AA LE++HG +GLV S L Q
Sbjct: 22 FVSLINILYNLLSTSSITG---TYASAGTLISFLQCAAFLEVIHGAIGLVPSGALLPLMQ 78
Query: 81 ISSRLFLVWGILWSFPETRTHXXXXXXXXXXXXTEIIRYLFFGFKEAFGFAPSWLLWLRY 140
R V I+ E + EIIRY + F G PSW+ ++RY
Sbjct: 79 WGGRTHFVLAIVNGIHEVQELPPVFITFLAWSIGEIIRYSHYAF-SCLGNCPSWITYIRY 137
Query: 141 STFLVLYPTGI-SSEVGLIYIVLPFIKASEKYCIRMPNTWNSSFDYFYAAIV 191
+ F+V+YP G+ E+ L+Y LP IK Y + S +D+ IV
Sbjct: 138 TAFIVIYPVGVFPGELWLMYQSLPIIKEKNIYADSFSSLPFSYYDFLKVVIV 189