Miyakogusa Predicted Gene

Lj0g3v0338939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0338939.1 Non Characterized Hit- tr|I1JXD0|I1JXD0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.23960
PE,89.72,0,SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,Membrane
protein,Tapt1/CMV receptor; DUF747,Membrane prote,CUFF.23183.1
         (322 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g076570.1 | pollen defective IN guidance-like protein | HC...   585   e-167
Medtr3g076570.2 | pollen defective IN guidance-like protein | HC...   455   e-128
Medtr4g090465.1 | lysine ketoglutarate reductase trans-splicing-...   387   e-108
Medtr3g076570.3 | pollen defective IN guidance-like protein | HC...   295   3e-80

>Medtr3g076570.1 | pollen defective IN guidance-like protein | HC |
           chr3:34425286-34418207 | 20130731
          Length = 594

 Score =  585 bits (1508), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 283/321 (88%), Positives = 295/321 (91%), Gaps = 13/321 (4%)

Query: 2   LSTMELSDFGCFLIMSCGVALLQRTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFN 61
           LSTMELSD GCF+IMS GV LLQRTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFN
Sbjct: 287 LSTMELSDLGCFIIMSFGVILLQRTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFN 346

Query: 62  GDVLQTLFHSAEGLANSPPESMRFWIWRFVSDQALAMAASIVHSFILLAQAITLSTCIVA 121
           GDVLQT FHSAEGLA+ PPE+MRFW+WRFV DQALA+A             ITLSTCIVA
Sbjct: 347 GDVLQTSFHSAEGLASCPPENMRFWLWRFVCDQALAVA-------------ITLSTCIVA 393

Query: 122 HNNALFALLVSNNFAEIKSNVFKRYSKDNVQSLVYFDSVERFHISAFILFVLAQNILEAE 181
           HNNAL ALLVSNNFAEIKSNVFKRYSKDNVQSLVYFDSVERFHISAFILFVLAQNILEAE
Sbjct: 394 HNNALLALLVSNNFAEIKSNVFKRYSKDNVQSLVYFDSVERFHISAFILFVLAQNILEAE 453

Query: 182 NPWFESFLTNVLLVYVCEMIIDIIKHSFIAKFNDIKPIVYSEFLEDLCKQTLNLQTEGVK 241
            PWFESFLTN+LLVYVCEM+IDIIKHSFIAKFNDIKPI YSEFLEDLCKQTLNLQTEGVK
Sbjct: 454 GPWFESFLTNILLVYVCEMVIDIIKHSFIAKFNDIKPIAYSEFLEDLCKQTLNLQTEGVK 513

Query: 242 KNLTFVPLAPACVVIRVLTPVYAANLPPNPLPWRLFWILLFSATTYVMLTSLKVLIGMGI 301
           KNLTFVPLAPACVVIRVLTPVY ANLP NPLPWR+FWI+LF A TYVMLTSLKVL+GMG+
Sbjct: 514 KNLTFVPLAPACVVIRVLTPVYGANLPQNPLPWRIFWIMLFLAMTYVMLTSLKVLMGMGL 573

Query: 302 QKYATWYINRCRRRKHHLHAD 322
           QK+ATWYINRCRRRKHHLHAD
Sbjct: 574 QKHATWYINRCRRRKHHLHAD 594


>Medtr3g076570.2 | pollen defective IN guidance-like protein | HC |
           chr3:34425286-34419054 | 20130731
          Length = 536

 Score =  455 bits (1171), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/254 (88%), Positives = 232/254 (91%), Gaps = 13/254 (5%)

Query: 2   LSTMELSDFGCFLIMSCGVALLQRTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFN 61
           LSTMELSD GCF+IMS GV LLQRTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFN
Sbjct: 287 LSTMELSDLGCFIIMSFGVILLQRTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFN 346

Query: 62  GDVLQTLFHSAEGLANSPPESMRFWIWRFVSDQALAMAASIVHSFILLAQAITLSTCIVA 121
           GDVLQT FHSAEGLA+ PPE+MRFW+WRFV DQALA+A             ITLSTCIVA
Sbjct: 347 GDVLQTSFHSAEGLASCPPENMRFWLWRFVCDQALAVA-------------ITLSTCIVA 393

Query: 122 HNNALFALLVSNNFAEIKSNVFKRYSKDNVQSLVYFDSVERFHISAFILFVLAQNILEAE 181
           HNNAL ALLVSNNFAEIKSNVFKRYSKDNVQSLVYFDSVERFHISAFILFVLAQNILEAE
Sbjct: 394 HNNALLALLVSNNFAEIKSNVFKRYSKDNVQSLVYFDSVERFHISAFILFVLAQNILEAE 453

Query: 182 NPWFESFLTNVLLVYVCEMIIDIIKHSFIAKFNDIKPIVYSEFLEDLCKQTLNLQTEGVK 241
            PWFESFLTN+LLVYVCEM+IDIIKHSFIAKFNDIKPI YSEFLEDLCKQTLNLQTEGVK
Sbjct: 454 GPWFESFLTNILLVYVCEMVIDIIKHSFIAKFNDIKPIAYSEFLEDLCKQTLNLQTEGVK 513

Query: 242 KNLTFVPLAPACVV 255
           KNLTFVPLAPACVV
Sbjct: 514 KNLTFVPLAPACVV 527


>Medtr4g090465.1 | lysine ketoglutarate reductase
           trans-splicing-related protein, putative | LC |
           chr4:35870810-35882150 | 20130731
          Length = 734

 Score =  387 bits (994), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/256 (74%), Positives = 211/256 (82%), Gaps = 16/256 (6%)

Query: 2   LSTMELSDFGCFLIMSCGVALLQRTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFN 61
           LST+ELSDFGCF+I++CG+ +LQ+ DISLIYH+IRGQ TIKLYV+YNVLEIFDKLCQSFN
Sbjct: 141 LSTIELSDFGCFIIVACGITVLQQIDISLIYHIIRGQATIKLYVIYNVLEIFDKLCQSFN 200

Query: 62  GDVLQTLFHSAEGLANSPPE--SMRFWIWRFVSDQALAMAASIVHSFILLAQAITLSTCI 119
           GDVLQ LFHSAEGLA  PPE  SMRFWIWRF+SDQ LA              AITLS CI
Sbjct: 201 GDVLQMLFHSAEGLARCPPETQSMRFWIWRFISDQVLA--------------AITLSACI 246

Query: 120 VAHNNALFALLVSNNFAEIKSNVFKRYSKDNVQSLVYFDSVERFHISAFILFVLAQNILE 179
           VAH NAL ALLVSNNF+EIKS VFK + KDNV S++YFDS+ERFHIS FILFVLAQNILE
Sbjct: 247 VAHYNALPALLVSNNFSEIKSYVFKGFKKDNVHSMMYFDSIERFHISTFILFVLAQNILE 306

Query: 180 AENPWFESFLTNVLLVYVCEMIIDIIKHSFIAKFNDIKPIVYSEFLEDLCKQTLNLQTEG 239
           AE PWF+ FL N L VY+CE+ IDIIKHSFIAKFNDI P  YSEFLE LCKQTL++Q+E 
Sbjct: 307 AEGPWFQGFLINALSVYLCEVAIDIIKHSFIAKFNDITPTAYSEFLEALCKQTLHMQSED 366

Query: 240 VKKNLTFVPLAPACVV 255
            KKNL FVPLAPACV 
Sbjct: 367 AKKNLKFVPLAPACVA 382


>Medtr3g076570.3 | pollen defective IN guidance-like protein | HC |
           chr3:34425419-34420634 | 20130731
          Length = 451

 Score =  295 bits (756), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 144/158 (91%), Positives = 150/158 (94%)

Query: 2   LSTMELSDFGCFLIMSCGVALLQRTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFN 61
           LSTMELSD GCF+IMS GV LLQRTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFN
Sbjct: 287 LSTMELSDLGCFIIMSFGVILLQRTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSFN 346

Query: 62  GDVLQTLFHSAEGLANSPPESMRFWIWRFVSDQALAMAASIVHSFILLAQAITLSTCIVA 121
           GDVLQT FHSAEGLA+ PPE+MRFW+WRFV DQALA+ ASIVHSFILLAQAITLSTCIVA
Sbjct: 347 GDVLQTSFHSAEGLASCPPENMRFWLWRFVCDQALAVVASIVHSFILLAQAITLSTCIVA 406

Query: 122 HNNALFALLVSNNFAEIKSNVFKRYSKDNVQSLVYFDS 159
           HNNAL ALLVSNNFAEIKSNVFKRYSKDNVQSLVYF+S
Sbjct: 407 HNNALLALLVSNNFAEIKSNVFKRYSKDNVQSLVYFES 444