Miyakogusa Predicted Gene

Lj0g3v0338819.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0338819.1 Non Characterized Hit- tr|F6XUI4|F6XUI4_CIOIN
Uncharacterized protein OS=Ciona intestinalis PE=4
SV=,36.89,0.000000001,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,Rab3
GTPase-activating protein catalytic subunit; seg,NUL,CUFF.23173.1
         (475 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g093230.1 | Rab3 GTPase-activating protein catalytic subun...   504   e-143
Medtr3g052790.1 | Rab3 GTPase-activating protein catalytic subun...   485   e-137

>Medtr5g093230.1 | Rab3 GTPase-activating protein catalytic subunit
           | HC | chr5:40696171-40704190 | 20130731
          Length = 692

 Score =  504 bits (1299), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 261/393 (66%), Positives = 305/393 (77%), Gaps = 19/393 (4%)

Query: 29  HATSLVSKARTAFHSAAAKAERVLMDFKSDLGEDSDKQSRHQSGRLQGDDSAQKNEMESK 88
            + + VSKARTAF+SAAAKAERVL+DFKSD   D DKQS +   R Q    +  ++ ESK
Sbjct: 2   ESPTFVSKARTAFNSAAAKAERVLLDFKSD--RDQDKQSPNSLTR-QSQIESPSSDNESK 58

Query: 89  LFNDLKHIKWRPLHIGKKQDWQDRIKNFRKGRKEIEDTDKVGDANITADALYDEDWSIVN 148
           L  + KHIKWRP +IG KQDWQD+ KN R GRKE EDTDK+GDAN+ A   YDE+  I+N
Sbjct: 59  LRGESKHIKWRPKNIGIKQDWQDKFKNIRLGRKEAEDTDKIGDANM-AIPFYDENLYILN 117

Query: 149 VRNDLNAKASEAILPELRRSGLAGTEAIPSVEGLTVATEDPIPPSSVLKQLALAVEAGRK 208
           V+NDL AKASEAI               P+VE LT AT+DPIPPSSVLKQLA+AVEAG K
Sbjct: 118 VKNDLEAKASEAI---------------PTVEALTAATKDPIPPSSVLKQLAMAVEAGSK 162

Query: 209 THSMKDFVASSGGSSPALEREGLSLSAIKALVLREKEEKLSSEFCSNEKVVYLINSLFNP 268
           T SMKD +ASSGGSSPA ER GLSLSA+KALVLREKE+KL+SEF SNEKVV+LINSLF+P
Sbjct: 163 TKSMKDVIASSGGSSPAKERGGLSLSAVKALVLREKEDKLTSEFSSNEKVVHLINSLFDP 222

Query: 269 EGEFLRRKINSDPEEIALTSLPRDIHSAPPESLVVKLAEVIGNFKTVRKMALFWCSVVTE 328
           EG+FLRRKINS+PE   +TSLPRDIH APPESLVVKLAE++GN+KTVRKMALFWC VV E
Sbjct: 223 EGDFLRRKINSNPEGNDMTSLPRDIHGAPPESLVVKLAEIVGNYKTVRKMALFWCRVVEE 282

Query: 329 LRKLWSEDKHLPGXXXXXXXXLKSCLLYQQFQVINCCISRKRRHIIATEAVDSMVMEANS 388
           LRK WSE+++LPG        LK+CLLYQ FQVINCCISRKR  IIATE+++SM+M+A+S
Sbjct: 283 LRKFWSEEQYLPGVPQNDIPDLKTCLLYQHFQVINCCISRKRLRIIATESLESMMMQASS 342

Query: 389 NTLKSGNHSDRTSATPVLYARISTGELVLRLGG 421
           N  +S N      A PVLYAR++TGE VLRLG 
Sbjct: 343 NIKESANDDGGAPANPVLYARLNTGEHVLRLGA 375


>Medtr3g052790.1 | Rab3 GTPase-activating protein catalytic subunit
           | HC | chr3:20895915-20902043 | 20130731
          Length = 704

 Score =  485 bits (1249), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 263/404 (65%), Positives = 301/404 (74%), Gaps = 22/404 (5%)

Query: 26  MEAH-ATSLVSKARTAFHSAAAKAERVLMDFKSDL-GEDSDKQSRHQSG--RLQGDDSAQ 81
           ME H   S VSKART  HSAA KAERVL DFKSDL GED DK  R   G  R Q DD A 
Sbjct: 1   MELHVGNSFVSKARTVLHSAAVKAERVLNDFKSDLAGEDFDKHLREDDGMQRNQEDDYA- 59

Query: 82  KNEMESKLFNDLKHIKWRPLHIGKKQDWQDRIKNFRKGRKEIEDTDKVGDANITADALYD 141
           K+E ESK   +LK IKWRP H G KQ W+DRI N RKGRKE EDTDKV DA++    L+D
Sbjct: 60  KDENESKFLVELKQIKWRPRHFGTKQHWKDRINNIRKGRKESEDTDKVEDASMDVIPLFD 119

Query: 142 EDWSIVNVRNDLNAKASEAILPELRRSGLAGTEAIPSVEGLTVATEDPIPPSSVLKQLAL 201
           E   +++V NDL+AK               G+EA  SVEGLTVA    IPPSSVLKQLA+
Sbjct: 120 E-MCVLHVENDLDAK---------------GSEAFSSVEGLTVAARRLIPPSSVLKQLAI 163

Query: 202 AVEAGRKTHSMKDFVASSGGSSPALEREGLSLSAIKALVLREKEEKLSSEFCSNEKVVYL 261
           AVEAG K +SMK+F AS+ GSSP++E+ GL LSA+KALVLREKE+KL+SEF S EK VYL
Sbjct: 164 AVEAGMKANSMKNFAASTEGSSPSIEKAGLRLSAVKALVLREKEDKLTSEFTSKEKFVYL 223

Query: 262 INSLFNPEGEFLRRKINSDPEEIALTSLPRDIHSAPPESLVVKLAEVIGNFKTVRKMALF 321
           I+SLFNPEG FLRRKINS+ EEI + SL RDIH APPESLVVKLAEVIGN KT+R+M +F
Sbjct: 224 ISSLFNPEGYFLRRKINSNQEEIEIPSLIRDIHGAPPESLVVKLAEVIGNLKTLREMEIF 283

Query: 322 WCSVVTELRKLWSEDKHLPGXXXXXXXXLKSCLLYQQFQVINCCISRKRRHIIATEAVDS 381
           WC V+ E+RKLWSE+KHLPG        LKSCLL QQFQVINCCISRKRRHIIA+E++D 
Sbjct: 284 WCRVIAEIRKLWSEEKHLPGVPLDDIPDLKSCLLNQQFQVINCCISRKRRHIIASESLDY 343

Query: 382 MVMEANS-NTLKSGNHSDRTSATPVLYARISTGELVLRLGGSLP 424
           M+MEANS NT +S N  D TSA+ +LYAR+STGELVLRLG   P
Sbjct: 344 MLMEANSNNTPESTNCCDGTSASRLLYARLSTGELVLRLGAHCP 387