Miyakogusa Predicted Gene

Lj0g3v0337679.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0337679.2 Non Characterized Hit- tr|D8QPI1|D8QPI1_SELML
Putative uncharacterized protein OS=Selaginella
moelle,44.64,0.00000000005,Homeodomain-like,Homeodomain-like; no
description,Homeodomain-like; Homeobox,Homeodomain;
HOMEOBOX_2,CUFF.23085.2
         (164 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g107530.1 | homeobox domain protein | HC | chr3:49599305-4...   184   4e-47

>Medtr3g107530.1 | homeobox domain protein | HC |
           chr3:49599305-49595941 | 20130731
          Length = 330

 Score =  184 bits (467), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 95/166 (57%), Positives = 115/166 (69%), Gaps = 5/166 (3%)

Query: 1   MKKLARALKTGRRKTSIKSLAAELCLDRAXXXXXXXXXXXXXXXXXXXXXDEPPATVV-- 58
           +  LARALKTGRRK SIK+LAAELCLDRA                     DEP  + V  
Sbjct: 163 LNMLARALKTGRRKLSIKALAAELCLDRALVLDLLRNPPPSLLMLSLSIPDEPKPSAVSP 222

Query: 59  ESKLGETIINETSLDSGESEP---KAQVPIHTMQRSWSAQKRLKKAHVDTLERVYRRSKR 115
           E+  G++   ETS D   +E    K+ +PIH MQ++WS++KRLKKA +DTLERVY RSKR
Sbjct: 223 ETTPGDSFYKETSADHAHAESGPKKSNLPIHDMQQNWSSRKRLKKAQLDTLERVYMRSKR 282

Query: 116 PTNTMISSIVHVTNIPRRKVVKWFEDKRAEDGVPDRRLPYQRSTAE 161
           PTN MIS+IVHV+NIPRR V+KWFEDKRAE+GVP+ RLPYQ+S  E
Sbjct: 283 PTNAMISNIVHVSNIPRRTVIKWFEDKRAEEGVPEHRLPYQQSANE 328