Miyakogusa Predicted Gene
- Lj0g3v0337609.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0337609.1 tr|Q0E2Y2|Q0E2Y2_ORYSJ Os02g0204300 protein
(Fragment) OS=Oryza sativa subsp. japonica
GN=Os02g02043,49.79,2e-18,seg,NULL,CUFF.23334.1
(663 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g107660.1 | peptidyl-prolyl cis-trans isomerase | LC | chr... 192 7e-49
Medtr1g011980.2 | peptidyl-prolyl cis-trans isomerase | HC | chr... 124 3e-28
Medtr1g011980.1 | peptidyl-prolyl cis-trans isomerase | HC | chr... 124 3e-28
Medtr7g095750.1 | peptidyl-prolyl cis-trans isomerase | HC | chr... 51 4e-06
Medtr7g095750.2 | peptidyl-prolyl cis-trans isomerase | HC | chr... 51 4e-06
>Medtr3g107660.1 | peptidyl-prolyl cis-trans isomerase | LC |
chr3:49656436-49648489 | 20130731
Length = 895
Score = 192 bits (489), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 142/228 (62%), Positives = 161/228 (70%), Gaps = 13/228 (5%)
Query: 343 ARSLSRSSGRVPSKRSISRSPVRSPERTLSRSTGRV--------PSKRSISRSPVRSPER 394
ARSLSRS RV S++SIS SPVR+P R+LSRS RV P ++S SRSP++SP R
Sbjct: 537 ARSLSRSPVRV-SRKSISHSPVRAPARSLSRSPARVSRKNINRSPLRKSSSRSPIKSPAR 595
Query: 395 TLSRSTGRVPSKRSISRSPVRSPERTLSRSTGRVLSKRSISRSPVRSPARSLSRSTGRVP 454
+LSRS RV S++SISRSPVR+P R+LSRS RV S++SISRSPVR PARSLSRS RV
Sbjct: 596 SLSRSPVRV-SRKSISRSPVRAPARSLSRSPVRV-SRKSISRSPVRVPARSLSRSPVRV- 652
Query: 455 SKRSISRSPVRSPARSISRSPVRAPS-RSISRSPVRAXXXXXXXXXXXXXXXXXXXXXXX 513
S++SIS SPVRSPARS+SRS R PS RSISRSPVRA
Sbjct: 653 SRKSISCSPVRSPARSLSRSSGRVPSKRSISRSPVRAPSRNNRRSYSRSPSPVRRRRTPR 712
Query: 514 XXXXXXXXXXDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRFNG 561
DASPKRIRRGRGFSERYSYARRYRTPSRSPVRSYR+NG
Sbjct: 713 GGSLSRSASPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRYNG 760
Score = 115 bits (289), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 118 LDAQQKELKRKDHSQKKVAEIKPPLVLEKGVPTIHHKEAEVSMLENDEKIVKENGERRSN 177
LD QQ+ELKRKD QKK AE+K P V+EK PTIHH++ E M ++ K VKENGER SN
Sbjct: 319 LDTQQQELKRKDRYQKK-AELKSPSVVEKDAPTIHHRKEEAGMPASNVKTVKENGERHSN 377
Query: 178 GIGAGYRSDRSEERQPDVMDDHPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTTKRR 237
G GA YRSDRSEERQPDVMD H G +T KRR
Sbjct: 378 GTGAAYRSDRSEERQPDVMDVHLGKSRSRSTSPKRPMSKSMSISPRRSRSKSRSITPKRR 437
Query: 238 LNKAP 242
L K+P
Sbjct: 438 LRKSP 442
>Medtr1g011980.2 | peptidyl-prolyl cis-trans isomerase | HC |
chr1:2294309-2302211 | 20130731
Length = 772
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 111/240 (46%), Positives = 134/240 (55%), Gaps = 45/240 (18%)
Query: 355 SKRSISRSPVRSPERTLSRS-----TGRVPSKRSISRSPVRSPERTLSRSTGRVPSK--- 406
S + + +SP SP+R SRS + R PS+RS+SRSPVRS R+L+R+ R P +
Sbjct: 421 SPKCVCKSPSISPKRRFSRSPSGSKSPRAPSQRSLSRSPVRSISRSLNRNVSRSPVRGRK 480
Query: 407 -RSISRSPVRSPERTLSRSTGRVLSKRSISRSPVRSPAR-SLSRS-----------TGRV 453
RSISRSP+R+ +S+S+SPVRSP R SLS+S + RV
Sbjct: 481 GRSISRSPMRTTH-----------IHKSVSKSPVRSPDRRSLSKSPARSVSQSRRSSARV 529
Query: 454 PSKRSISRSPVRSPARSISRSPVR------------APSRSISRSPVRAXXXXXXXXXXX 501
S+R++SRSPVR +SISRSPVR P RSISRSPVR
Sbjct: 530 SSRRTVSRSPVRMSRKSISRSPVRSSARSLSRSSGRVPLRSISRSPVRVASRGNHRSYSR 589
Query: 502 XXXXXXXXXXXXXXXXXXXXXXDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRFNG 561
DASPKRIRRGRGFSERYSYARRYRTPSRSPVR YR+NG
Sbjct: 590 SRSPVRRARTPRGRSLSKSVSPDASPKRIRRGRGFSERYSYARRYRTPSRSPVR-YRYNG 648
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 62/84 (73%), Gaps = 1/84 (1%)
Query: 118 LDAQQKELKRKDHSQKKVAEIKPPLVLEKGVPTIHHKEAEVSMLENDEKIVKENGERRSN 177
LD Q+K LK+KDHSQ AE++ VLEK +P ++HK+ + + ++E++ KENG + SN
Sbjct: 319 LDTQEKILKQKDHSQI-AAEVQSSSVLEKELPPLNHKKRDGVGMLDEEELPKENGAQPSN 377
Query: 178 GIGAGYRSDRSEERQPDVMDDHPG 201
GI A YR DRSEERQ DVMDD+PG
Sbjct: 378 GIRANYRPDRSEERQHDVMDDNPG 401
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 83/133 (62%), Gaps = 14/133 (10%)
Query: 367 PERTLSRSTGRVPSKRSISRSPVRSPERTLSRSTGRVPSKRSISRSPVRSPERTLSRS-- 424
P+R+ R + SRS SP++T+S+S P + + +SP SP+R SRS
Sbjct: 385 PDRSEERQHDVMDDNPGKSRSRSMSPKQTVSKSMSISP--KCVCKSPSISPKRRFSRSPS 442
Query: 425 ---TGRVLSKRSISRSPVRSPARSLSRSTGRVPSK----RSISRSPVRSP--ARSISRSP 475
+ R S+RS+SRSPVRS +RSL+R+ R P + RSISRSP+R+ +S+S+SP
Sbjct: 443 GSKSPRAPSQRSLSRSPVRSISRSLNRNVSRSPVRGRKGRSISRSPMRTTHIHKSVSKSP 502
Query: 476 VRAPS-RSISRSP 487
VR+P RS+S+SP
Sbjct: 503 VRSPDRRSLSKSP 515
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 12/109 (11%)
Query: 392 PERTLSRSTGRVPSKRSISRSPVRSPERTLSRSTGRVLSKRSISRSPVRSPARSLSRS-- 449
P+R+ R + SRS SP++T+S+S +S + + +SP SP R SRS
Sbjct: 385 PDRSEERQHDVMDDNPGKSRSRSMSPKQTVSKSMS--ISPKCVCKSPSISPKRRFSRSPS 442
Query: 450 ---TGRVPSKRSISRSPVRSPARS----ISRSPVRA-PSRSISRSPVRA 490
+ R PS+RS+SRSPVRS +RS +SRSPVR RSISRSP+R
Sbjct: 443 GSKSPRAPSQRSLSRSPVRSISRSLNRNVSRSPVRGRKGRSISRSPMRT 491
>Medtr1g011980.1 | peptidyl-prolyl cis-trans isomerase | HC |
chr1:2294301-2302211 | 20130731
Length = 772
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 111/240 (46%), Positives = 134/240 (55%), Gaps = 45/240 (18%)
Query: 355 SKRSISRSPVRSPERTLSRS-----TGRVPSKRSISRSPVRSPERTLSRSTGRVPSK--- 406
S + + +SP SP+R SRS + R PS+RS+SRSPVRS R+L+R+ R P +
Sbjct: 421 SPKCVCKSPSISPKRRFSRSPSGSKSPRAPSQRSLSRSPVRSISRSLNRNVSRSPVRGRK 480
Query: 407 -RSISRSPVRSPERTLSRSTGRVLSKRSISRSPVRSPAR-SLSRS-----------TGRV 453
RSISRSP+R+ +S+S+SPVRSP R SLS+S + RV
Sbjct: 481 GRSISRSPMRTTH-----------IHKSVSKSPVRSPDRRSLSKSPARSVSQSRRSSARV 529
Query: 454 PSKRSISRSPVRSPARSISRSPVR------------APSRSISRSPVRAXXXXXXXXXXX 501
S+R++SRSPVR +SISRSPVR P RSISRSPVR
Sbjct: 530 SSRRTVSRSPVRMSRKSISRSPVRSSARSLSRSSGRVPLRSISRSPVRVASRGNHRSYSR 589
Query: 502 XXXXXXXXXXXXXXXXXXXXXXDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRFNG 561
DASPKRIRRGRGFSERYSYARRYRTPSRSPVR YR+NG
Sbjct: 590 SRSPVRRARTPRGRSLSKSVSPDASPKRIRRGRGFSERYSYARRYRTPSRSPVR-YRYNG 648
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 62/84 (73%), Gaps = 1/84 (1%)
Query: 118 LDAQQKELKRKDHSQKKVAEIKPPLVLEKGVPTIHHKEAEVSMLENDEKIVKENGERRSN 177
LD Q+K LK+KDHSQ AE++ VLEK +P ++HK+ + + ++E++ KENG + SN
Sbjct: 319 LDTQEKILKQKDHSQI-AAEVQSSSVLEKELPPLNHKKRDGVGMLDEEELPKENGAQPSN 377
Query: 178 GIGAGYRSDRSEERQPDVMDDHPG 201
GI A YR DRSEERQ DVMDD+PG
Sbjct: 378 GIRANYRPDRSEERQHDVMDDNPG 401
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 83/133 (62%), Gaps = 14/133 (10%)
Query: 367 PERTLSRSTGRVPSKRSISRSPVRSPERTLSRSTGRVPSKRSISRSPVRSPERTLSRS-- 424
P+R+ R + SRS SP++T+S+S P + + +SP SP+R SRS
Sbjct: 385 PDRSEERQHDVMDDNPGKSRSRSMSPKQTVSKSMSISP--KCVCKSPSISPKRRFSRSPS 442
Query: 425 ---TGRVLSKRSISRSPVRSPARSLSRSTGRVPSK----RSISRSPVRSP--ARSISRSP 475
+ R S+RS+SRSPVRS +RSL+R+ R P + RSISRSP+R+ +S+S+SP
Sbjct: 443 GSKSPRAPSQRSLSRSPVRSISRSLNRNVSRSPVRGRKGRSISRSPMRTTHIHKSVSKSP 502
Query: 476 VRAPS-RSISRSP 487
VR+P RS+S+SP
Sbjct: 503 VRSPDRRSLSKSP 515
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 12/109 (11%)
Query: 392 PERTLSRSTGRVPSKRSISRSPVRSPERTLSRSTGRVLSKRSISRSPVRSPARSLSRS-- 449
P+R+ R + SRS SP++T+S+S +S + + +SP SP R SRS
Sbjct: 385 PDRSEERQHDVMDDNPGKSRSRSMSPKQTVSKSMS--ISPKCVCKSPSISPKRRFSRSPS 442
Query: 450 ---TGRVPSKRSISRSPVRSPARS----ISRSPVRA-PSRSISRSPVRA 490
+ R PS+RS+SRSPVRS +RS +SRSPVR RSISRSP+R
Sbjct: 443 GSKSPRAPSQRSLSRSPVRSISRSLNRNVSRSPVRGRKGRSISRSPMRT 491
>Medtr7g095750.1 | peptidyl-prolyl cis-trans isomerase | HC |
chr7:38378566-38384594 | 20130731
Length = 651
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 41/125 (32%)
Query: 437 SPVRSPARSLSRSTGRVPSKRSISRSPVRSPARSISRSPVRAPSRSISRSPVRAXXXXXX 496
SP R PARS ++++G + R++ + SP S R IS+SP
Sbjct: 407 SPGRGPARSPTKNSGELNQGRAL----LASPDHKASEPAASKHGRGISKSP--------- 453
Query: 497 XXXXXXXXXXXXXXXXXXXXXXXXXXXDASPKRIRRGRGFSERYSYARRYRTPS--RSPV 554
+ PKR+++GRGF+ER+++ARRYRTPS RSP
Sbjct: 454 -------------------------SPNGMPKRVKKGRGFTERFAFARRYRTPSPERSP- 487
Query: 555 RSYRF 559
R+YR+
Sbjct: 488 RAYRY 492
>Medtr7g095750.2 | peptidyl-prolyl cis-trans isomerase | HC |
chr7:38378415-38384646 | 20130731
Length = 651
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 41/125 (32%)
Query: 437 SPVRSPARSLSRSTGRVPSKRSISRSPVRSPARSISRSPVRAPSRSISRSPVRAXXXXXX 496
SP R PARS ++++G + R++ + SP S R IS+SP
Sbjct: 407 SPGRGPARSPTKNSGELNQGRAL----LASPDHKASEPAASKHGRGISKSP--------- 453
Query: 497 XXXXXXXXXXXXXXXXXXXXXXXXXXXDASPKRIRRGRGFSERYSYARRYRTPS--RSPV 554
+ PKR+++GRGF+ER+++ARRYRTPS RSP
Sbjct: 454 -------------------------SPNGMPKRVKKGRGFTERFAFARRYRTPSPERSP- 487
Query: 555 RSYRF 559
R+YR+
Sbjct: 488 RAYRY 492