Miyakogusa Predicted Gene

Lj0g3v0336649.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0336649.1 Non Characterized Hit- tr|G7ISV8|G7ISV8_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,54.17,3e-18,
,CUFF.23012.1
         (106 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g048140.1 | F-box/RNI/FBD-like domain protein | LC | chr2:...    96   7e-21
Medtr1g090907.1 | F-box plant-like protein | LC | chr1:40995417-...    93   5e-20
Medtr5g080150.1 | F-box/RNI/FBD-like domain protein | LC | chr5:...    59   7e-10
Medtr3g448340.1 | F-box/RNI/FBD-like domain protein | LC | chr3:...    51   3e-07

>Medtr2g048140.1 | F-box/RNI/FBD-like domain protein | LC |
           chr2:21179387-21181178 | 20130731
          Length = 456

 Score = 95.9 bits (237), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/96 (54%), Positives = 65/96 (67%), Gaps = 6/96 (6%)

Query: 1   MGDEKVGLKRLVIDKCLFKFDYILFNAPNLEYFKYSGRVWTSYITIDRDVMKGAEIDFPF 60
           +GDE +GL RLV++KC    +Y +FNAPNL+YFKYSG V+TS    D +V    E+D  F
Sbjct: 216 LGDEPLGLTRLVVNKC--DSEYFIFNAPNLKYFKYSGVVFTS----DINVRAIEEVDIDF 269

Query: 61  EFEREFNEYGDELYTILSDFYPVRVLTVCSVLLQVI 96
             E EFNE G+EL  IL DF    +LTVCS LLQV+
Sbjct: 270 SQESEFNERGNELCQILHDFSAANILTVCSYLLQVV 305


>Medtr1g090907.1 | F-box plant-like protein | LC |
           chr1:40995417-40993738 | 20130731
          Length = 455

 Score = 92.8 bits (229), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 65/96 (67%), Gaps = 6/96 (6%)

Query: 1   MGDEKVGLKRLVIDKCLFKFDYILFNAPNLEYFKYSGRVWTSYITIDRDVMKGAEIDFPF 60
           +GDE +GL RLV++KC    +Y +FNAPNL+YFKYSG V+TS    D +V    E+   F
Sbjct: 216 LGDEPLGLTRLVVNKC--DAEYFIFNAPNLKYFKYSGAVFTS----DINVRAIEEVYIDF 269

Query: 61  EFEREFNEYGDELYTILSDFYPVRVLTVCSVLLQVI 96
             E EF+E G+EL  IL DF   ++LTVCS LLQ++
Sbjct: 270 SLESEFHERGNELCQILHDFSAAKILTVCSYLLQIV 305


>Medtr5g080150.1 | F-box/RNI/FBD-like domain protein | LC |
           chr5:34299037-34296649 | 20130731
          Length = 391

 Score = 59.3 bits (142), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 4   EKVGLKRLVIDKCLFKFDYILFNAPNLEYFKYSGRVWTSYITIDRDVMKGAEIDFPFEFE 63
           E +GLK+LVI++C FK      NAPNL+ F Y G ++   I I    +    +DFP E  
Sbjct: 219 EYLGLKKLVINRCHFKSSTFRINAPNLKVFDYHGSLFD--IDIQSPALDEVNLDFPLELG 276

Query: 64  REFNEYGD-ELYTILSDFYPVRVLTVCSVLLQVILY 98
            +   +G   L+ +L D    RV+TVCS  LQ I +
Sbjct: 277 CQ--SHGSYYLHKLLKDLPSPRVMTVCSYWLQGITF 310


>Medtr3g448340.1 | F-box/RNI/FBD-like domain protein | LC |
           chr3:16154337-16151394 | 20130731
          Length = 462

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 3/94 (3%)

Query: 1   MGDEKVGLKRLVIDKCLFKFDYILFNAPNLEYFKYSGRVWTSYITIDRDVMKGAEIDFPF 60
           +G +++ LK+L++D C F     L +APNL YFK+ G +   Y  ID       E+D  F
Sbjct: 212 VGVDELRLKKLIVDSCFFMEGGFLIDAPNLTYFKFHGNI--MYFDIDYSS-HLEEVDLYF 268

Query: 61  EFEREFNEYGDELYTILSDFYPVRVLTVCSVLLQ 94
             E E  +    +Y+ + +F  V+VLT+C  +L+
Sbjct: 269 GLEYENPKEDVFIYSTIRNFKYVKVLTICGFILK 302