Miyakogusa Predicted Gene

Lj0g3v0336579.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0336579.2 Non Characterized Hit- tr|I1L454|I1L454_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.30192
PE,85.76,0,Vps26,Vacuolar protein sorting-associated protein 26; DOWN
SYNDROME CRITICAL REGION PROTEIN 3,NULL; ,CUFF.23024.2
         (316 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g069620.1 | down syndrome critical region protein, putativ...   572   e-163
Medtr6g069620.2 | down syndrome critical region protein, putativ...   430   e-121

>Medtr6g069620.1 | down syndrome critical region protein, putative |
           HC | chr6:25099308-25104885 | 20130731
          Length = 315

 Score =  572 bits (1475), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 279/315 (88%), Positives = 300/315 (95%), Gaps = 1/315 (0%)

Query: 1   MSVELKLSRSNRIYRPSEALEGKIIIKTQSSISHYGIRLTLKGSVNLQVRGGSAGVVESF 60
           MSV LKLSR NRIYRPSE LEGKII+KTQSSISHYGIRLT+KGSVNLQVRGGSAGVVESF
Sbjct: 1   MSVHLKLSRPNRIYRPSELLEGKIIVKTQSSISHYGIRLTIKGSVNLQVRGGSAGVVESF 60

Query: 61  YGVIKPIPIVNRTVEVKSSGKIGSGTTEIPFSMNLKQRDENLERFYETFHGSDINIQYLL 120
           YGVIKPIPIV RTVEV+SS KIGSGTTEIPFS+NL+Q DE+LERFYETFHG+DI+IQYLL
Sbjct: 61  YGVIKPIPIVKRTVEVQSSRKIGSGTTEIPFSLNLRQ-DEDLERFYETFHGADISIQYLL 119

Query: 121 TADISRGYLHKSLSATTEFIMESDKADLLQRPVSPETVIFYITQDTQRHPLLPEIKSGGF 180
           T DISRGYLHKSLSATTEFI+ESDK DLLQRP+ PE VIFYITQDTQRHPLLPE+KSGGF
Sbjct: 120 TVDISRGYLHKSLSATTEFIIESDKGDLLQRPIPPEMVIFYITQDTQRHPLLPELKSGGF 179

Query: 181 RVTGKICTQCSLSSPINGELTVEASAVPIQSIELQLFRVESVLFGEKIVNETSLIQTTQI 240
           RVTGKICTQCSLSSP+NGELTVE SAVPIQSI++QLFRVES+L GEKIV ETSLIQTTQI
Sbjct: 180 RVTGKICTQCSLSSPLNGELTVERSAVPIQSIDIQLFRVESILHGEKIVTETSLIQTTQI 239

Query: 241 ADGDVCRNLTLPIYVILPRLLTCPTIYAGPFSIEFKVAIVISFQSELAKLPRKSDSRTPR 300
           ADGDVCRNLTLPIYVILPRLLTCPTI+AGPFSIEFKVA+VI+FQSEL+KL +KSDSRTPR
Sbjct: 240 ADGDVCRNLTLPIYVILPRLLTCPTIFAGPFSIEFKVAVVITFQSELSKLQKKSDSRTPR 299

Query: 301 LWLAMETLPLELVRS 315
           LWLAME LPLELVR+
Sbjct: 300 LWLAMEMLPLELVRT 314


>Medtr6g069620.2 | down syndrome critical region protein, putative |
           HC | chr6:25099308-25104885 | 20130731
          Length = 245

 Score =  430 bits (1106), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/243 (87%), Positives = 228/243 (93%), Gaps = 1/243 (0%)

Query: 1   MSVELKLSRSNRIYRPSEALEGKIIIKTQSSISHYGIRLTLKGSVNLQVRGGSAGVVESF 60
           MSV LKLSR NRIYRPSE LEGKII+KTQSSISHYGIRLT+KGSVNLQVRGGSAGVVESF
Sbjct: 1   MSVHLKLSRPNRIYRPSELLEGKIIVKTQSSISHYGIRLTIKGSVNLQVRGGSAGVVESF 60

Query: 61  YGVIKPIPIVNRTVEVKSSGKIGSGTTEIPFSMNLKQRDENLERFYETFHGSDINIQYLL 120
           YGVIKPIPIV RTVEV+SS KIGSGTTEIPFS+NL+Q DE+LERFYETFHG+DI+IQYLL
Sbjct: 61  YGVIKPIPIVKRTVEVQSSRKIGSGTTEIPFSLNLRQ-DEDLERFYETFHGADISIQYLL 119

Query: 121 TADISRGYLHKSLSATTEFIMESDKADLLQRPVSPETVIFYITQDTQRHPLLPEIKSGGF 180
           T DISRGYLHKSLSATTEFI+ESDK DLLQRP+ PE VIFYITQDTQRHPLLPE+KSGGF
Sbjct: 120 TVDISRGYLHKSLSATTEFIIESDKGDLLQRPIPPEMVIFYITQDTQRHPLLPELKSGGF 179

Query: 181 RVTGKICTQCSLSSPINGELTVEASAVPIQSIELQLFRVESVLFGEKIVNETSLIQTTQI 240
           RVTGKICTQCSLSSP+NGELTVE SAVPIQSI++QLFRVES+L GEKIV ETSLIQTTQ 
Sbjct: 180 RVTGKICTQCSLSSPLNGELTVERSAVPIQSIDIQLFRVESILHGEKIVTETSLIQTTQA 239

Query: 241 ADG 243
           +D 
Sbjct: 240 SDA 242