Miyakogusa Predicted Gene

Lj0g3v0336359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0336359.1 tr|G7K3G7|G7K3G7_MEDTR DNA polymerase OS=Medicago
truncatula GN=MTR_5g092100 PE=3
SV=1,34.44,0.000000000000001,seg,NULL,CUFF.22989.1
         (216 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g050110.1 | PolI-like B DNA polymerase | HC | chr3:1973201...   131   4e-31
Medtr3g050140.3 | PolI-like B DNA polymerase | HC | chr3:1974564...   116   1e-26
Medtr3g050140.6 | PolI-like B DNA polymerase | HC | chr3:1974564...   114   5e-26
Medtr3g050140.1 | PolI-like B DNA polymerase | HC | chr3:1974754...   114   5e-26
Medtr3g050140.5 | PolI-like B DNA polymerase | HC | chr3:1974564...   114   5e-26
Medtr3g050140.2 | PolI-like B DNA polymerase | HC | chr3:1974564...   114   5e-26
Medtr3g050140.4 | PolI-like B DNA polymerase | HC | chr3:1974564...   114   5e-26
Medtr3g050140.9 | PolI-like B DNA polymerase | HC | chr3:1974564...   114   5e-26
Medtr3g050140.8 | PolI-like B DNA polymerase | HC | chr3:1974564...    90   2e-18
Medtr5g092100.2 | PolI-like B DNA polymerase | HC | chr5:4022121...    74   8e-14
Medtr5g092100.1 | PolI-like B DNA polymerase | HC | chr5:4022121...    74   8e-14

>Medtr3g050110.1 | PolI-like B DNA polymerase | HC |
           chr3:19732012-19740084 | 20130731
          Length = 1055

 Score =  131 bits (330), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/187 (47%), Positives = 111/187 (59%), Gaps = 22/187 (11%)

Query: 49  SRRKIQSIQVANDVLHNSTGSVNCLQSREVSYCLKRPSFGLNKFNVMRHNHNSPVHISAM 108
           SRRK +SIQ+A++ L +   S + LQ RE SYC KR SFGL K N M ++ NSPVHIS M
Sbjct: 3   SRRKSKSIQIASNFLRHRNLSGSSLQFREGSYCPKRISFGLKKCNDMEYHRNSPVHISVM 62

Query: 109 KFSTTSCSMLEEKNQMTAGENLSSY-SYEKQVKMMR-----------------GGDELGW 150
           KFST S S L+  NQ    E LSS  SY++QV+MM                   GD  GW
Sbjct: 63  KFSTASFSTLKVTNQTRREEELSSLSSYDRQVRMMTHFGSCSYRLSKTPRRKLSGDRTGW 122

Query: 151 AMRVNDLSKRKKEVCALNPRCSYPSNT---TASDDQK-HVSKKRGHNLMLQDLGVPASSS 206
           A   + L++ K E+  L+ R  YPSNT    +S  QK  +++  GHNLML DL  PASSS
Sbjct: 123 AEAGHKLTQIKMEMHDLDKRSLYPSNTNTIASSIAQKPAITQNEGHNLMLHDLCEPASSS 182

Query: 207 VERSILN 213
           V+ S+LN
Sbjct: 183 VQHSMLN 189


>Medtr3g050140.3 | PolI-like B DNA polymerase | HC |
           chr3:19745644-19761421 | 20130731
          Length = 1087

 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/236 (40%), Positives = 116/236 (49%), Gaps = 38/236 (16%)

Query: 1   MGVSSQSTPFRPPYYCXXXXXXXXXXXXXXXXXXXXXX-FSASSGSLHPSRRKIQSIQVA 59
           M VSSQST FR  +YC                       F A+ GS     R        
Sbjct: 1   MRVSSQSTAFRSTFYCPSCFSFSSSSSSRPFRSSLSSLGFFANYGSSQHRHR-------- 52

Query: 60  NDVLHNSTGSVNCLQSREVSYCLKRPSFGLNKFNVMRHNHNSPVHISAMKFSTTSCSMLE 119
                N +GS   LQ RE SYC KR SFGL K N M ++ NSPVHIS MKFST S S L+
Sbjct: 53  -----NLSGSF--LQFREGSYCPKRISFGLKKCNDMEYHRNSPVHISVMKFSTASFSTLK 105

Query: 120 EKNQMTAGENLSSY-SYEKQVKMMR-----------------GGDELGWAMRVNDLSKRK 161
             NQ    E LSS  SY++QV+MM                   GD  GWA   + L++ K
Sbjct: 106 VTNQTRREEELSSLSSYDRQVRMMTHFGSCSYRLSKTPRRKLSGDRTGWAEAGHKLTQIK 165

Query: 162 KEVCALNPRCSYPSNT---TASDDQK-HVSKKRGHNLMLQDLGVPASSSVERSILN 213
            E+  L+ R  YPSNT    +S  QK  +++  G NLML DL  PASSSV+ S+LN
Sbjct: 166 MEMHDLDKRSLYPSNTNTIASSIAQKPAITQNEGRNLMLHDLCEPASSSVQHSMLN 221


>Medtr3g050140.6 | PolI-like B DNA polymerase | HC |
           chr3:19745648-19761392 | 20130731
          Length = 1077

 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/174 (47%), Positives = 100/174 (57%), Gaps = 25/174 (14%)

Query: 63  LH-NSTGSVNCLQSREVSYCLKRPSFGLNKFNVMRHNHNSPVHISAMKFSTTSCSMLEEK 121
           LH N +GS   LQ RE SYC KR SFGL K N M ++ NSPVHIS MKFST S S L+  
Sbjct: 40  LHRNLSGSF--LQFREGSYCPKRISFGLKKCNDMEYHRNSPVHISVMKFSTASFSTLKVT 97

Query: 122 NQMTAGENLSSY-SYEKQVKMMR-----------------GGDELGWAMRVNDLSKRKKE 163
           NQ    E LSS  SY++QV+MM                   GD  GWA   + L++ K E
Sbjct: 98  NQTRREEELSSLSSYDRQVRMMTHFGSCSYRLSKTPRRKLSGDRTGWAEAGHKLTQIKME 157

Query: 164 VCALNPRCSYPSNT---TASDDQK-HVSKKRGHNLMLQDLGVPASSSVERSILN 213
           +  L+ R  YPSNT    +S  QK  +++  G NLML DL  PASSSV+ S+LN
Sbjct: 158 MHDLDKRSLYPSNTNTIASSIAQKPAITQNEGRNLMLHDLCEPASSSVQHSMLN 211


>Medtr3g050140.1 | PolI-like B DNA polymerase | HC |
           chr3:19747543-19761369 | 20130731
          Length = 1158

 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/174 (47%), Positives = 100/174 (57%), Gaps = 25/174 (14%)

Query: 63  LH-NSTGSVNCLQSREVSYCLKRPSFGLNKFNVMRHNHNSPVHISAMKFSTTSCSMLEEK 121
           LH N +GS   LQ RE SYC KR SFGL K N M ++ NSPVHIS MKFST S S L+  
Sbjct: 121 LHRNLSGSF--LQFREGSYCPKRISFGLKKCNDMEYHRNSPVHISVMKFSTASFSTLKVT 178

Query: 122 NQMTAGENLSSY-SYEKQVKMMR-----------------GGDELGWAMRVNDLSKRKKE 163
           NQ    E LSS  SY++QV+MM                   GD  GWA   + L++ K E
Sbjct: 179 NQTRREEELSSLSSYDRQVRMMTHFGSCSYRLSKTPRRKLSGDRTGWAEAGHKLTQIKME 238

Query: 164 VCALNPRCSYPSNT---TASDDQK-HVSKKRGHNLMLQDLGVPASSSVERSILN 213
           +  L+ R  YPSNT    +S  QK  +++  G NLML DL  PASSSV+ S+LN
Sbjct: 239 MHDLDKRSLYPSNTNTIASSIAQKPAITQNEGRNLMLHDLCEPASSSVQHSMLN 292


>Medtr3g050140.5 | PolI-like B DNA polymerase | HC |
           chr3:19745644-19761421 | 20130731
          Length = 1040

 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/171 (46%), Positives = 98/171 (57%), Gaps = 24/171 (14%)

Query: 65  NSTGSVNCLQSREVSYCLKRPSFGLNKFNVMRHNHNSPVHISAMKFSTTSCSMLEEKNQM 124
           N +GS   LQ RE SYC KR SFGL K N M ++ NSPVHIS MKFST S S L+  NQ 
Sbjct: 6   NLSGSF--LQFREGSYCPKRISFGLKKCNDMEYHRNSPVHISVMKFSTASFSTLKVTNQT 63

Query: 125 TAGENLSSY-SYEKQVKMMR-----------------GGDELGWAMRVNDLSKRKKEVCA 166
              E LSS  SY++QV+MM                   GD  GWA   + L++ K E+  
Sbjct: 64  RREEELSSLSSYDRQVRMMTHFGSCSYRLSKTPRRKLSGDRTGWAEAGHKLTQIKMEMHD 123

Query: 167 LNPRCSYPSNT---TASDDQK-HVSKKRGHNLMLQDLGVPASSSVERSILN 213
           L+ R  YPSNT    +S  QK  +++  G NLML DL  PASSSV+ S+LN
Sbjct: 124 LDKRSLYPSNTNTIASSIAQKPAITQNEGRNLMLHDLCEPASSSVQHSMLN 174


>Medtr3g050140.2 | PolI-like B DNA polymerase | HC |
           chr3:19745643-19761421 | 20130731
          Length = 1040

 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/171 (46%), Positives = 98/171 (57%), Gaps = 24/171 (14%)

Query: 65  NSTGSVNCLQSREVSYCLKRPSFGLNKFNVMRHNHNSPVHISAMKFSTTSCSMLEEKNQM 124
           N +GS   LQ RE SYC KR SFGL K N M ++ NSPVHIS MKFST S S L+  NQ 
Sbjct: 6   NLSGSF--LQFREGSYCPKRISFGLKKCNDMEYHRNSPVHISVMKFSTASFSTLKVTNQT 63

Query: 125 TAGENLSSY-SYEKQVKMMR-----------------GGDELGWAMRVNDLSKRKKEVCA 166
              E LSS  SY++QV+MM                   GD  GWA   + L++ K E+  
Sbjct: 64  RREEELSSLSSYDRQVRMMTHFGSCSYRLSKTPRRKLSGDRTGWAEAGHKLTQIKMEMHD 123

Query: 167 LNPRCSYPSNT---TASDDQK-HVSKKRGHNLMLQDLGVPASSSVERSILN 213
           L+ R  YPSNT    +S  QK  +++  G NLML DL  PASSSV+ S+LN
Sbjct: 124 LDKRSLYPSNTNTIASSIAQKPAITQNEGRNLMLHDLCEPASSSVQHSMLN 174


>Medtr3g050140.4 | PolI-like B DNA polymerase | HC |
           chr3:19745644-19761421 | 20130731
          Length = 1040

 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/171 (46%), Positives = 98/171 (57%), Gaps = 24/171 (14%)

Query: 65  NSTGSVNCLQSREVSYCLKRPSFGLNKFNVMRHNHNSPVHISAMKFSTTSCSMLEEKNQM 124
           N +GS   LQ RE SYC KR SFGL K N M ++ NSPVHIS MKFST S S L+  NQ 
Sbjct: 6   NLSGSF--LQFREGSYCPKRISFGLKKCNDMEYHRNSPVHISVMKFSTASFSTLKVTNQT 63

Query: 125 TAGENLSSY-SYEKQVKMMR-----------------GGDELGWAMRVNDLSKRKKEVCA 166
              E LSS  SY++QV+MM                   GD  GWA   + L++ K E+  
Sbjct: 64  RREEELSSLSSYDRQVRMMTHFGSCSYRLSKTPRRKLSGDRTGWAEAGHKLTQIKMEMHD 123

Query: 167 LNPRCSYPSNT---TASDDQK-HVSKKRGHNLMLQDLGVPASSSVERSILN 213
           L+ R  YPSNT    +S  QK  +++  G NLML DL  PASSSV+ S+LN
Sbjct: 124 LDKRSLYPSNTNTIASSIAQKPAITQNEGRNLMLHDLCEPASSSVQHSMLN 174


>Medtr3g050140.9 | PolI-like B DNA polymerase | HC |
           chr3:19745644-19761421 | 20130731
          Length = 1040

 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/171 (46%), Positives = 98/171 (57%), Gaps = 24/171 (14%)

Query: 65  NSTGSVNCLQSREVSYCLKRPSFGLNKFNVMRHNHNSPVHISAMKFSTTSCSMLEEKNQM 124
           N +GS   LQ RE SYC KR SFGL K N M ++ NSPVHIS MKFST S S L+  NQ 
Sbjct: 6   NLSGSF--LQFREGSYCPKRISFGLKKCNDMEYHRNSPVHISVMKFSTASFSTLKVTNQT 63

Query: 125 TAGENLSSY-SYEKQVKMMR-----------------GGDELGWAMRVNDLSKRKKEVCA 166
              E LSS  SY++QV+MM                   GD  GWA   + L++ K E+  
Sbjct: 64  RREEELSSLSSYDRQVRMMTHFGSCSYRLSKTPRRKLSGDRTGWAEAGHKLTQIKMEMHD 123

Query: 167 LNPRCSYPSNT---TASDDQK-HVSKKRGHNLMLQDLGVPASSSVERSILN 213
           L+ R  YPSNT    +S  QK  +++  G NLML DL  PASSSV+ S+LN
Sbjct: 124 LDKRSLYPSNTNTIASSIAQKPAITQNEGRNLMLHDLCEPASSSVQHSMLN 174


>Medtr3g050140.8 | PolI-like B DNA polymerase | HC |
           chr3:19745644-19761421 | 20130731
          Length = 1007

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/141 (43%), Positives = 79/141 (56%), Gaps = 22/141 (15%)

Query: 95  MRHNHNSPVHISAMKFSTTSCSMLEEKNQMTAGENLSSY-SYEKQVKMMR---------- 143
           M ++ NSPVHIS MKFST S S L+  NQ    E LSS  SY++QV+MM           
Sbjct: 1   MEYHRNSPVHISVMKFSTASFSTLKVTNQTRREEELSSLSSYDRQVRMMTHFGSCSYRLS 60

Query: 144 -------GGDELGWAMRVNDLSKRKKEVCALNPRCSYPSNT---TASDDQK-HVSKKRGH 192
                   GD  GWA   + L++ K E+  L+ R  YPSNT    +S  QK  +++  G 
Sbjct: 61  KTPRRKLSGDRTGWAEAGHKLTQIKMEMHDLDKRSLYPSNTNTIASSIAQKPAITQNEGR 120

Query: 193 NLMLQDLGVPASSSVERSILN 213
           NLML DL  PASSSV+ S+LN
Sbjct: 121 NLMLHDLCEPASSSVQHSMLN 141


>Medtr5g092100.2 | PolI-like B DNA polymerase | HC |
           chr5:40221218-40213069 | 20130731
          Length = 932

 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 96/194 (49%), Gaps = 32/194 (16%)

Query: 48  PSRRKIQSIQVANDVLHNSTGSVNCLQSREVSYCLKRPSFGLNKFNVMRHNHN----SPV 103
           P RRKI++IQ+A++ L NST   NC+++  +  C K  S GLN+ +   + HN    +PV
Sbjct: 39  PHRRKIKAIQIASNGLRNSTMHSNCVRADLL--CTKLTSLGLNEHSNTGYKHNFPYKNPV 96

Query: 104 HISAMKFSTTSCSMLEEKNQMTAGENLSSYSYEKQV------------------KMMRGG 145
            ++ MKFS  S SMLEE          SS+S E QV                  + + GG
Sbjct: 97  RVTLMKFSNASASMLEEMMVEEEVN--SSHSSEMQVRKVDVAPCNPELSTTATERKLAGG 154

Query: 146 DELGWAMRVNDLSKRKKEVCALNPRCSYPSNTTASDDQKHVSKKRG------HNLMLQDL 199
           D  GW +  N L++ KKE+   N      + +  S+    + +++G       NL+ Q  
Sbjct: 155 DNRGWTLAKNKLAEGKKEMNGTNRYERKSNGSHVSNRFASIGRRQGSSTDVVSNLVRQGH 214

Query: 200 GVPASSSVERSILN 213
           G   SSSV+ S+LN
Sbjct: 215 GEHVSSSVQYSVLN 228


>Medtr5g092100.1 | PolI-like B DNA polymerase | HC |
           chr5:40221218-40213069 | 20130731
          Length = 1084

 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 96/194 (49%), Gaps = 32/194 (16%)

Query: 48  PSRRKIQSIQVANDVLHNSTGSVNCLQSREVSYCLKRPSFGLNKFNVMRHNHN----SPV 103
           P RRKI++IQ+A++ L NST   NC+++  +  C K  S GLN+ +   + HN    +PV
Sbjct: 39  PHRRKIKAIQIASNGLRNSTMHSNCVRADLL--CTKLTSLGLNEHSNTGYKHNFPYKNPV 96

Query: 104 HISAMKFSTTSCSMLEEKNQMTAGENLSSYSYEKQV------------------KMMRGG 145
            ++ MKFS  S SMLEE          SS+S E QV                  + + GG
Sbjct: 97  RVTLMKFSNASASMLEEMMVEEEVN--SSHSSEMQVRKVDVAPCNPELSTTATERKLAGG 154

Query: 146 DELGWAMRVNDLSKRKKEVCALNPRCSYPSNTTASDDQKHVSKKRG------HNLMLQDL 199
           D  GW +  N L++ KKE+   N      + +  S+    + +++G       NL+ Q  
Sbjct: 155 DNRGWTLAKNKLAEGKKEMNGTNRYERKSNGSHVSNRFASIGRRQGSSTDVVSNLVRQGH 214

Query: 200 GVPASSSVERSILN 213
           G   SSSV+ S+LN
Sbjct: 215 GEHVSSSVQYSVLN 228