Miyakogusa Predicted Gene

Lj0g3v0336009.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0336009.1 Non Characterized Hit- tr|Q2RB37|Q2RB37_ORYSJ
Transposon protein, putative, CACTA, En/Spm sub-class
,48.31,2e-19,SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL;
coiled-coil,NULL; seg,NULL,CUFF.22967.1
         (150 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g057120.1 | hypothetical protein | LC | chr8:18801883-1880...   108   2e-24

>Medtr8g057120.1 | hypothetical protein | LC |
           chr8:18801883-18803131 | 20130731
          Length = 272

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 72/118 (61%), Gaps = 1/118 (0%)

Query: 33  VHEGLNEDAKKFYNLVEDANQELYPGCKKISTLSFTIRIYLLKSLYGWSIASFTANLELL 92
           V E  NE AK+FY L  DA Q LY GC + S LSF +++Y +K L G S  S T  LELL
Sbjct: 34  VSEERNE-AKEFYELTRDAEQPLYEGCTRYSRLSFLLKLYHIKCLCGLSDKSLTMILELL 92

Query: 93  KEAIPDLNIPISFNKTKSMIRNLGLDYKKIDACPNNCMPFWKEHVNSDSCHNCGASRW 150
           K+A    +IP SF + K  I  LG++Y KI ACPN+CM +W E    ++C  C  S+W
Sbjct: 93  KDAFEFASIPSSFYEAKKTITKLGMNYVKIPACPNDCMLYWGEDEERETCKICNTSKW 150